ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,... 119 8e-24
2gb|AY106598.1| Zea mays PCO069596 mRNA sequence 80 7e-12
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
4dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
5dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
6gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosom... 48 0.025
7gb|AC182436.1| Mus musculus chromosome 5, clone wi1-1982K15, com... 44 0.39
8gb|AC165966.3| Mus musculus BAC clone RP23-259L2 from chromosome... 44 0.39
9gb|AC102518.11| Mus musculus chromosome 8, clone RP24-502J8, com... 44 0.39
10ref|XM_951656.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
11ref|XM_327910.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
12gb|AC146218.2| Pan troglodytes BAC clone CH251-267E2 from Y, com... 42 1.5
13emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 42 1.5
14emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig... 42 1.5
15emb|AL683829.15| Mouse DNA sequence from clone RP23-64F17 on chr... 42 1.5
16gb|AC153815.7| Mus musculus 6 BAC RP23-205F19 (Roswell Park Canc... 42 1.5
17dbj|BS000645.2| Pan troglodytes chromosome Y clone: PTB-520M19, ... 42 1.5
18dbj|BS000539.1| Pan troglodytes chromosome Y clone:PTB-144M03, c... 42 1.5
19dbj|BS000535.1| Pan troglodytes chromosome Y clone:PTB-096E06, c... 42 1.5
20gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.5
21gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell... 42 1.5
22gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswel... 42 1.5
23gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, comp... 42 1.5
24gb|AC012104.6|AC012104 Mus musculus chromosome , clone CT7-478J1... 42 1.5
25gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21... 42 1.5
26gb|AC115871.8| Mus musculus chromosome 5, clone RP24-343A12, com... 40 6.0
27gb|BC103849.1| Homo sapiens high-mobility group (nonhistone chro... 40 6.0
28gb|BC103850.1| Homo sapiens high-mobility group (nonhistone chro... 40 6.0
29gb|BC103851.1| Homo sapiens high-mobility group (nonhistone chro... 40 6.0
30gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, co... 40 6.0
31gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.0
32gb|DQ162790.1| Culex pipiens quinquefasciatus hexokinase (HK) mR... 40 6.0
33gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.0
34gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 6.0
35gb|AC163353.3| Mus musculus BAC clone RP23-55G7 from chromosome ... 40 6.0
36gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosom... 40 6.0
37ref|NR_002165.1| Homo sapiens high-mobility group (nonhistone ch... 40 6.0
38ref|XM_747541.1| Aspergillus fumigatus Af293 zinc metalloprotein... 40 6.0
39emb|CR974455.5| Mouse DNA sequence from clone RP24-65D22 on chro... 40 6.0
40gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, co... 40 6.0
41gb|BC059784.1| Mus musculus cDNA clone IMAGE:4951210, partial cds 40 6.0
42gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, compl... 40 6.0
43gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cance... 40 6.0
44emb|AL049709.18|HSDJ18C9 Human DNA sequence from clone RP1-18C9 ... 40 6.0
45gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome... 40 6.0
46emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercon... 40 6.0
47gb|AC097273.3| Genomic sequence for Mus musculus, clone RP23-118... 40 6.0
48gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome... 40 6.0
49gb|AC011907.4| Drosophila melanogaster 3L BAC RP98-18B21 (Roswel... 40 6.0
50tpg|BK001849.1| TPA: TPA_inf: Drosophila melanogaster HDC07783 (... 40 6.0
51gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, com... 40 6.0
52gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.0
53gb|AC156542.9| Mus musculus chromosome 1, clone RP23-370J16, com... 40 6.0
54gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell ... 40 6.0
55gb|AC112679.15| Mus musculus chromosome 1, clone RP23-199H14, co... 40 6.0
56gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete... 40 6.0
57gb|AC097173.1| Homo sapiens BAC clone RP11-96A1 from 4, complete... 40 6.0
58gb|AC104326.20| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 6.0
59gb|AC118656.4| Homo sapiens chromosome 11, clone RP11-313H5, com... 40 6.0
60emb|AJ343967.1|HEC343967 Hepatitis C virus partial mRNA for enve... 40 6.0
61gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, compl... 40 6.0
62gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, co... 40 6.0
63gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 ... 40 6.0
64gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome... 40 6.0
65gb|AC125143.4| Mus musculus BAC clone RP24-342H13 from 17, compl... 40 6.0
66gb|AC132228.3| Mus musculus BAC clone RP24-480G11 from 6, comple... 40 6.0
67gb|U76671.1|RSU76671 Rhodobacter sphaeroides photosynthetic regu... 40 6.0
68gb|AC168090.3| Mus musculus BAC clone RP24-272N5 from chromosome... 40 6.0
69emb|AL772235.4| Mouse DNA sequence from clone RP23-155K12 on chr... 40 6.0
70emb|AL606919.12| Mouse DNA sequence from clone RP23-264F10 on ch... 40 6.0 
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase,
            aminoalcoholphosphotransferase, putative
            growth-regulating factor 1, putative GAG-POL precursor,
            putative GAG-POL precursor, putative RIRE2 orf3, putative
            anthocyanin regulatory C1, putative protein T30F21.6,
            putative copia polyprotein, putative copia polyprotein,
            putative protein NP_196765.1, and gb protein genes,
            complete cds; and putative zinc finger protein gene,
            partial cds
          Length = 144159

 Score =  119 bits (60), Expect = 8e-24
 Identities = 107/122 (87%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                        
Query: 316  cctactccgtgttgtgggagatggcctggccgaacttgaggaacagctccgcgtccgacg 375
            |||||||| |||| || |||||||||| ||||||||||||||||||||| |||||||| |
Sbjct: 1425 cctactccatgttctgcgagatggcctcgccgaacttgaggaacagctcggcgtccgagg 1484

                                                                        
Query: 376  tgctcgacgagttggcgcaggacgacagcgcgccggcgccccgcaggctcacgtactcgt 435
            |||| | |||||||||||||   || || ||||||| |||||||||||| ||||||||||
Sbjct: 1485 tgctggtcgagttggcgcag---gagagagcgccggtgccccgcaggctgacgtactcgt 1541

              
Query: 436  tg 437
            ||
Sbjct: 1542 tg 1543
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>gb|AY106598.1| Zea mays PCO069596 mRNA sequence
          Length = 1273

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 75/86 (87%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                        
Query: 350  cttgaggaacagctccgcgtccgacgtgctcgacgagttggcgcaggacgacagcgcgcc 409
            ||||||||||||||| |||||||| ||||| |||||||||||||||   || || |||||
Sbjct: 1273 cttgaggaacagctcggcgtccgaggtgctggacgagttggcgcag---gagagggcgcc 1217

                                      
Query: 410  ggcgccccgcaggctcacgtactcgt 435
             | |||||||||||| ||||||||||
Sbjct: 1216 agtgccccgcaggctgacgtactcgt 1191
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                           
Query: 317     ctactccgtgttgtgggagatggcctggccgaacttgaggaacagctccgcgtccgacgt 376
               |||||| ||||| || || ||| ||| ||| |||||||| |||||||| || || || ||
Sbjct: 5255422 ctactctgtgttctgagaaatgacctcgccaaacttgagaaacagctcagcatcggaagt 5255481

                                    
Query: 377     gctcgacgagttggcgcagga 397
                | ||||||||||||||||||
Sbjct: 5255482 acacgacgagttggcgcagga 5255502
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>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0016O19
          Length = 169120

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                          
Query: 317    ctactccgtgttgtgggagatggcctggccgaacttgaggaacagctccgcgtccgacgt 376
              |||||| ||||| || || ||| ||| ||| |||||||| |||||||| || || || ||
Sbjct: 122144 ctactctgtgttctgagaaatgacctcgccaaacttgagaaacagctcagcatcggaagt 122203

                                   
Query: 377    gctcgacgagttggcgcagga 397
               | ||||||||||||||||||
Sbjct: 122204 acacgacgagttggcgcagga 122224
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>dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P05, full
            insert sequence
          Length = 3673

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 317  ctactccgtgttgtgggagatggcctggccgaacttgaggaacagctccgcgtccgacgt 376
            |||||| ||||| || || ||| ||| ||| |||||||| |||||||| || || || ||
Sbjct: 3307 ctactctgtgttctgagaaatgacctcgccaaacttgagaaacagctcagcatcggaagt 3248

                                 
Query: 377  gctcgacgagttggcgcagga 397
             | ||||||||||||||||||
Sbjct: 3247 acacgacgagttggcgcagga 3227
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>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence
          Length = 206284

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 90    aagaatggggaggaagagaaggagaata 117
             ||||| ||||||||||||||||||||||
Sbjct: 74107 aagaagggggaggaagagaaggagaata 74134
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>gb|AC182436.1| Mus musculus chromosome 5, clone wi1-1982K15, complete sequence
          Length = 43869

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 90    aagaatggggaggaagagaaggagaa 115
             ||||| ||||||||||||||||||||
Sbjct: 29736 aagaagggggaggaagagaaggagaa 29761
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>gb|AC165966.3| Mus musculus BAC clone RP23-259L2 from chromosome 17, complete sequence
          Length = 194944

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 92    gaatggggaggaagagaaggag 113
             ||||||||||||||||||||||
Sbjct: 68991 gaatggggaggaagagaaggag 68970
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>gb|AC102518.11| Mus musculus chromosome 8, clone RP24-502J8, complete sequence
          Length = 199824

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 90    aagaatggggaggaagagaaggagaa 115
             ||||| ||||||||||||||||||||
Sbjct: 39396 aagaagggggaggaagagaaggagaa 39421
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>ref|XM_951656.1| Neurospora crassa OR74A hypothetical protein (NCU01472.1) partial
            mRNA
          Length = 4494

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 87   gataagaatggggaggaagag 107
            |||||||||||||||||||||
Sbjct: 4366 gataagaatggggaggaagag 4386
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>ref|XM_327910.1| Neurospora crassa OR74A hypothetical protein (NCU01472.1) partial
            mRNA
          Length = 4494

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 87   gataagaatggggaggaagag 107
            |||||||||||||||||||||
Sbjct: 4366 gataagaatggggaggaagag 4386
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>gb|AC146218.2| Pan troglodytes BAC clone CH251-267E2 from Y, complete sequence
          Length = 203014

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     aatggggaggaagagaaggag 113
              |||||||||||||||||||||
Sbjct: 145558 aatggggaggaagagaaggag 145578
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 51      gtcacagagagatccattaca 71
               |||||||||||||||||||||
Sbjct: 2613128 gtcacagagagatccattaca 2613148
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>emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig B11E5
          Length = 191196

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    gataagaatggggaggaagag 107
             |||||||||||||||||||||
Sbjct: 42154 gataagaatggggaggaagag 42174
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>emb|AL683829.15| Mouse DNA sequence from clone RP23-64F17 on chromosome 4 Contains two
              novel genes, the gene for a novel major urinary protein
              (Mup) family member, the Zfp37 gene for zinc finger protein
              37, the Slc31a2 gene for solute carrier family 31 member 2
              and two CpG islands, complete sequence
          Length = 223133

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 91     agaatggggaggaagagaaggagaa 115
              |||| ||||||||||||||||||||
Sbjct: 145640 agaagggggaggaagagaaggagaa 145616



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 91     agaatggggaggaagagaaggagaa 115
              |||| ||||||||||||||||||||
Sbjct: 137615 agaagggggaggaagagaaggagaa 137639
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>gb|AC153815.7| Mus musculus 6 BAC RP23-205F19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 230983

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 85     gagataagaatggggaggaagagaa 109
              |||||||| ||||||||||||||||
Sbjct: 152766 gagataaggatggggaggaagagaa 152790
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>dbj|BS000645.2| Pan troglodytes chromosome Y clone: PTB-520M19, complete sequence
          Length = 166301

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    aatggggaggaagagaaggag 113
             |||||||||||||||||||||
Sbjct: 11245 aatggggaggaagagaaggag 11225
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>dbj|BS000539.1| Pan troglodytes chromosome Y clone:PTB-144M03, complete sequences
          Length = 21701

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    aatggggaggaagagaaggag 113
             |||||||||||||||||||||
Sbjct: 21399 aatggggaggaagagaaggag 21419
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>dbj|BS000535.1| Pan troglodytes chromosome Y clone:PTB-096E06, complete sequences
          Length = 198405

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     aatggggaggaagagaaggag 113
              |||||||||||||||||||||
Sbjct: 134875 aatggggaggaagagaaggag 134895
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 93       aatggggaggaagagaaggag 113
                |||||||||||||||||||||
Sbjct: 19421147 aatggggaggaagagaaggag 19421167
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>gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 173558

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 220    actactccgaccgaccgaccg 240
              |||||||||||||||||||||
Sbjct: 154645 actactccgaccgaccgaccg 154625
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>gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 173386

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   actactccgaccgaccgaccg 240
             |||||||||||||||||||||
Sbjct: 59574 actactccgaccgaccgaccg 59554
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>gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, complete sequence
          Length = 162298

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 91    agaatggggaggaagagaagg 111
             |||||||||||||||||||||
Sbjct: 42415 agaatggggaggaagagaagg 42435
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>gb|AC012104.6|AC012104 Mus musculus chromosome , clone CT7-478J15, complete sequence
          Length = 124373

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 85    gagataagaatggggaggaagagaa 109
             |||||||| ||||||||||||||||
Sbjct: 41886 gagataaggatggggaggaagagaa 41910
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>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete
             sequence
          Length = 315944

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   actactccgaccgaccgaccg 240
             |||||||||||||||||||||
Sbjct: 39674 actactccgaccgaccgaccg 39654
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>gb|AC115871.8| Mus musculus chromosome 5, clone RP24-343A12, complete sequence
          Length = 175928

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ggggaggaagagaaggagaa 115
             ||||||||||||||||||||
Sbjct: 60861 ggggaggaagagaaggagaa 60842
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>gb|BC103849.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein
           4-like, mRNA (cDNA clone MGC:118987 IMAGE:40002762),
           complete cds
          Length = 888

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  atggggaggaagagaaggag 113
           ||||||||||||||||||||
Sbjct: 860 atggggaggaagagaaggag 879
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>gb|BC103850.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein
           4-like, mRNA (cDNA clone MGC:118988 IMAGE:40002763),
           complete cds
          Length = 887

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  atggggaggaagagaaggag 113
           ||||||||||||||||||||
Sbjct: 859 atggggaggaagagaaggag 878
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>gb|BC103851.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein
           4-like, mRNA (cDNA clone MGC:118989 IMAGE:40002765),
           complete cds
          Length = 887

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  atggggaggaagagaaggag 113
           ||||||||||||||||||||
Sbjct: 859 atggggaggaagagaaggag 878
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>gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, complete sequence
          Length = 181572

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    tggggaggaagagaaggaga 114
             ||||||||||||||||||||
Sbjct: 84798 tggggaggaagagaaggaga 84779
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     ccgaccgactacccgaatca 253
               ||||||||||||||||||||
Sbjct: 1578509 ccgaccgactacccgaatca 1578528
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>gb|DQ162790.1| Culex pipiens quinquefasciatus hexokinase (HK) mRNA, partial cds
          Length = 772

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 cgacgtgctcgacgagttgg 390
           ||||||||||||||||||||
Sbjct: 627 cgacgtgctcgacgagttgg 646
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    gcgccggcgccccgcaggct 424
              ||||||||||||||||||||
Sbjct: 101544 gcgccggcgccccgcaggct 101563
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>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    aatggggaggaagagaagga 112
             ||||||||||||||||||||
Sbjct: 89209 aatggggaggaagagaagga 89190
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>gb|AC163353.3| Mus musculus BAC clone RP23-55G7 from chromosome 6, complete sequence
          Length = 264135

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ggggaggaagagaaggagaa 115
             ||||||||||||||||||||
Sbjct: 80758 ggggaggaagagaaggagaa 80739
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>gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosome 6, complete sequence
          Length = 169094

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ggggaggaagagaaggagaa 115
             ||||||||||||||||||||
Sbjct: 92001 ggggaggaagagaaggagaa 92020
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>ref|NR_002165.1| Homo sapiens high-mobility group (nonhistone chromosomal) protein
           4-like (HMG4L) on chromosome 20
          Length = 888

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  atggggaggaagagaaggag 113
           ||||||||||||||||||||
Sbjct: 860 atggggaggaagagaaggag 879
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>ref|XM_747541.1| Aspergillus fumigatus Af293 zinc metalloproteinase (Afu1g12640)
           partial mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 gcgggcttcaaggcggcggc 310
           ||||||||||||||||||||
Sbjct: 324 gcgggcttcaaggcggcggc 305
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>emb|CR974455.5| Mouse DNA sequence from clone RP24-65D22 on chromosome 2, complete
             sequence
          Length = 193651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 329   gtgggagatggcctggccgaacttgagg 356
             ||||||| ||||||||||||||| ||||
Sbjct: 12489 gtgggagctggcctggccgaactcgagg 12516
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>gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, complete sequence
          Length = 195122

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    aatggggaggaagagaagga 112
             ||||||||||||||||||||
Sbjct: 14274 aatggggaggaagagaagga 14293
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>gb|BC059784.1| Mus musculus cDNA clone IMAGE:4951210, partial cds
          Length = 1517

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   ggggaggaagagaaggagaa 115
            ||||||||||||||||||||
Sbjct: 1171 ggggaggaagagaaggagaa 1190
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>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence
          Length = 204911

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     ggggaggaagagaaggagaa 115
              ||||||||||||||||||||
Sbjct: 177307 ggggaggaagagaaggagaa 177288
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>gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 200439

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ggggaggaagagaaggagaa 115
             ||||||||||||||||||||
Sbjct: 24028 ggggaggaagagaaggagaa 24009
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>emb|AL049709.18|HSDJ18C9 Human DNA sequence from clone RP1-18C9 on chromosome 20 Contains the 5'
             end of the ACAS2 gene for acetyl-Coenzyme A synthetase 2
             (ADP forming), the GGTL3 gene for gamma-
             glutamyltranspeptidase-like 3 protein, the HMG4L
             pseudogene similar to high mobility group proteins, the 5'
             end of the AIB3 gene for thyroid hormone receptor binding
             protein (KIAA0181) and four CpG Islands, complete sequence
          Length = 126755

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    atggggaggaagagaaggag 113
             ||||||||||||||||||||
Sbjct: 39706 atggggaggaagagaaggag 39687
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>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     gaggaagagaaggagaatac 118
              ||||||||||||||||||||
Sbjct: 163271 gaggaagagaaggagaatac 163290
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>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3
          Length = 348551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gcgggcttcaaggcggcggc 310
             ||||||||||||||||||||
Sbjct: 38963 gcgggcttcaaggcggcggc 38944
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>gb|AC097273.3| Genomic sequence for Mus musculus, clone RP23-118N13, complete sequence
          Length = 211657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 329   gtgggagatggcctggccgaacttgagg 356
             ||||||| ||||||||||||||| ||||
Sbjct: 82418 gtgggagctggcctggccgaactcgagg 82391
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>gb|AC161426.5| Mus musculus BAC clone RP23-69L13 from chromosome 10, complete sequence
          Length = 255667

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     ggaggaagagaaggagaata 117
              ||||||||||||||||||||
Sbjct: 144843 ggaggaagagaaggagaata 144862
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>gb|AC011907.4| Drosophila melanogaster 3L BAC RP98-18B21 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 164597

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    actccgaccgaccgaccgac 242
              ||||||||||||||||||||
Sbjct: 157943 actccgaccgaccgaccgac 157962
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>tpg|BK001849.1| TPA: TPA_inf: Drosophila melanogaster HDC07783 (HDC07783) gene,
           complete cds
          Length = 3189

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 actccgaccgaccgaccgac 242
           ||||||||||||||||||||
Sbjct: 60  actccgaccgaccgaccgac 79
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>gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, complete sequence
          Length = 190779

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    aatggggaggaagagaagga 112
             ||||||||||||||||||||
Sbjct: 63457 aatggggaggaagagaagga 63476
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 370     ccgacgtgctcgacgagttggcgc 393
               ||||||||||||||||| ||||||
Sbjct: 2861015 ccgacgtgctcgacgaggtggcgc 2860992



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    gctcgacgagttggcgcagg 396
              ||||||||||||||||||||
Sbjct: 427309 gctcgacgagttggcgcagg 427290
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>gb|AC156542.9| Mus musculus chromosome 1, clone RP23-370J16, complete sequence
          Length = 168193

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ggggaggaagagaaggagaa 115
             ||||||||||||||||||||
Sbjct: 91949 ggggaggaagagaaggagaa 91930
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>gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 168047

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   actccgaccgaccgaccgac 242
             ||||||||||||||||||||
Sbjct: 28905 actccgaccgaccgaccgac 28924
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>gb|AC112679.15| Mus musculus chromosome 1, clone RP23-199H14, complete sequence
          Length = 185805

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ggggaggaagagaaggagaa 115
             ||||||||||||||||||||
Sbjct: 37612 ggggaggaagagaaggagaa 37593
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>gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete sequence
          Length = 237678

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     aagaatggggaggaagagaaggag 113
              ||||| ||||||||||||||||||
Sbjct: 170697 aagaagggggaggaagagaaggag 170720
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>gb|AC097173.1| Homo sapiens BAC clone RP11-96A1 from 4, complete sequence
          Length = 175629

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    agaatggggaggaagagaaggaga 114
             ||||||||||||||| ||||||||
Sbjct: 97766 agaatggggaggaagggaaggaga 97743
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>gb|AC104326.20| Mus musculus strain C57BL/6J chromosome 2 clone rp23-20g17, complete
             sequence
          Length = 232241

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 329   gtgggagatggcctggccgaacttgagg 356
             ||||||| ||||||||||||||| ||||
Sbjct: 49035 gtgggagctggcctggccgaactcgagg 49062
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>gb|AC118656.4| Homo sapiens chromosome 11, clone RP11-313H5, complete sequence
          Length = 155143

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     aatggggaggaagagaagga 112
              ||||||||||||||||||||
Sbjct: 155033 aatggggaggaagagaagga 155014
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>emb|AJ343967.1|HEC343967 Hepatitis C virus partial mRNA for envelope protein (E2 gene),
           isolate ETR7
          Length = 387

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  ggaggaagagaaggagaata 117
           ||||||||||||||||||||
Sbjct: 322 ggaggaagagaaggagaata 303
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>gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, complete sequence
          Length = 155730

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ggaggaagagaaggagaata 117
             ||||||||||||||||||||
Sbjct: 26051 ggaggaagagaaggagaata 26032
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>gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, complete sequence
          Length = 209834

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tggggaggaagagaaggaga 114
              ||||||||||||||||||||
Sbjct: 124602 tggggaggaagagaaggaga 124583
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>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete
             sequence
          Length = 286515

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   actccgaccgaccgaccgac 242
             ||||||||||||||||||||
Sbjct: 15584 actccgaccgaccgaccgac 15603
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>gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome 9, complete sequence
          Length = 164119

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    gaggaagagaaggagaatac 118
             ||||||||||||||||||||
Sbjct: 11147 gaggaagagaaggagaatac 11166
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>gb|AC125143.4| Mus musculus BAC clone RP24-342H13 from 17, complete sequence
          Length = 219259

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     atggggaggaagagaaggag 113
              ||||||||||||||||||||
Sbjct: 144608 atggggaggaagagaaggag 144589
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>gb|AC132228.3| Mus musculus BAC clone RP24-480G11 from 6, complete sequence
          Length = 180203

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ggggaggaagagaaggagaa 115
             ||||||||||||||||||||
Sbjct: 59657 ggggaggaagagaaggagaa 59638
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>gb|U76671.1|RSU76671 Rhodobacter sphaeroides photosynthetic regulatory protein (spb) gene
            and S-adenosyl L-homocystein hydrolase gene, complete cds
          Length = 3606

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 405  gcgccggcgccccgcaggct 424
            ||||||||||||||||||||
Sbjct: 2918 gcgccggcgccccgcaggct 2899
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>gb|AC168090.3| Mus musculus BAC clone RP24-272N5 from chromosome 17, complete sequence
          Length = 157940

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    atggggaggaagagaaggag 113
             ||||||||||||||||||||
Sbjct: 29571 atggggaggaagagaaggag 29552
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>emb|AL772235.4| Mouse DNA sequence from clone RP23-155K12 on chromosome 2, complete
              sequence
          Length = 190410

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tggggaggaagagaaggaga 114
              ||||||||||||||||||||
Sbjct: 160022 tggggaggaagagaaggaga 160003
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>emb|AL606919.12| Mouse DNA sequence from clone RP23-264F10 on chromosome 4, complete
             sequence
          Length = 187816

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    atggggaggaagagaaggag 113
             ||||||||||||||||||||
Sbjct: 60268 atggggaggaagagaaggag 60249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,829,961
Number of Sequences: 3902068
Number of extensions: 3829961
Number of successful extensions: 107409
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 106892
Number of HSP's gapped (non-prelim): 516
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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