Clone Name | rbastl38a02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107337.1| Zea mays PCO064147 mRNA sequence Length = 1264 Score = 127 bits (64), Expect = 3e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 258 tctagggattacaacgataaggccaccagatagtagcatcttcacagcatactgtccgtc 317 ||||||||||||||||||||| ||||||| |||| || | || | |||||| ||| ||| Sbjct: 1078 tctagggattacaacgataagaccaccaggtagtggcttatttatagcatagagtcagtc 1019 Query: 318 ctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaacctt 377 || |||||||| || |||||||||||||| || ||| |||||||| || ||||||||| Sbjct: 1018 cttgctggcaaccgtctgaagaagtttactggtactgagggcaacctatgtctgaacctt 959 Query: 378 gggtgcctcatggcatagaaccctcctaatgc 409 ||||||||||| ||||||||||||||||||| Sbjct: 958 gggtgcctcatcacatagaaccctcctaatgc 927
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 2e-18 Identities = 135/163 (82%) Strand = Plus / Minus Query: 268 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 327 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 34954907 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 34954848 Query: 328 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 387 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 34954847 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 34954788 Query: 388 tggcatagaaccctcctaatgctacgagaacctggagcggtgt 430 || ||||||||||| | |||||| | ||||| ||||| ||||| Sbjct: 34954787 tgacatagaaccctgccaatgctgcaagaacttggagtggtgt 34954745
>dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J04, full insert sequence Length = 3717 Score = 101 bits (51), Expect = 2e-18 Identities = 135/163 (82%) Strand = Plus / Minus Query: 268 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 327 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 3497 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 3438 Query: 328 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 387 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 3437 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3378 Query: 388 tggcatagaaccctcctaatgctacgagaacctggagcggtgt 430 || ||||||||||| | |||||| | ||||| ||||| ||||| Sbjct: 3377 tgacatagaaccctgccaatgctgcaagaacttggagtggtgt 3335
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 101 bits (51), Expect = 2e-18 Identities = 135/163 (82%) Strand = Plus / Minus Query: 268 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 327 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 60289 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 60230 Query: 328 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 387 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 60229 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 60170 Query: 388 tggcatagaaccctcctaatgctacgagaacctggagcggtgt 430 || ||||||||||| | |||||| | ||||| ||||| ||||| Sbjct: 60169 tgacatagaaccctgccaatgctgcaagaacttggagtggtgt 60127
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 101 bits (51), Expect = 2e-18 Identities = 135/163 (82%) Strand = Plus / Minus Query: 268 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 327 |||| |||||||||||||||| | ||| || | ||||| ||||| ||||| ||||||| Sbjct: 13959 acaatgataaggccaccagatggcagctattttatagcatgctgtcggtccttgctggca 13900 Query: 328 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 387 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 13899 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 13840 Query: 388 tggcatagaaccctcctaatgctacgagaacctggagcggtgt 430 || ||||||||||| | |||||| | ||||| ||||| ||||| Sbjct: 13839 tgacatagaaccctgccaatgctgcaagaacttggagtggtgt 13797
>ref|XM_474407.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3036 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Minus Query: 303 agcatactgtccgtcctcgctggcaaacgcctgaagaagtttaccggcgttgaaggcaac 362 ||||| ||||| ||||| ||||||| || |||||||| || || ||||||||||||||| Sbjct: 3032 agcatgctgtcggtccttgctggcagtcgtctgaagaaattcactggcgttgaaggcaac 2973 Query: 363 ctgtgcctgaaccttgggtgcctcatggcatagaaccctcctaatgctacgagaacctgg 422 || | |||||||| |||||||||||| ||||||||||| | |||||| | ||||| ||| Sbjct: 2972 ctatatctgaacctcgggtgcctcatgacatagaaccctgccaatgctgcaagaacttgg 2913 Query: 423 agcggtgt 430 || ||||| Sbjct: 2912 agtggtgt 2905
>dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full insert sequence Length = 3730 Score = 93.7 bits (47), Expect = 5e-16 Identities = 134/163 (82%) Strand = Plus / Minus Query: 268 acaacgataaggccaccagatagtagcatcttcacagcatactgtccgtcctcgctggca 327 |||| |||||||||||||||| | ||| || | ||||| ||||| | ||| ||||||| Sbjct: 3519 acaatgataaggccaccagatggcagctattttatagcatgctgtcggcccttgctggca 3460 Query: 328 aacgcctgaagaagtttaccggcgttgaaggcaacctgtgcctgaaccttgggtgcctca 387 || |||||||| || || ||||||||||||||||| | |||||||| |||||||||| Sbjct: 3459 gtcgtctgaagaaattcactggcgttgaaggcaacctatatctgaacctcgggtgcctca 3400 Query: 388 tggcatagaaccctcctaatgctacgagaacctggagcggtgt 430 || ||||||||||| | |||||| | ||||| ||||| ||||| Sbjct: 3399 tgacatagaaccctgccaatgctgcaagaacttggagtggtgt 3357
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence Length = 612 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 301 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 343 ||||||| ||||| |||||||| |||| ||||||||||||||| Sbjct: 353 acagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence Length = 1254 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 301 acagcatactgtccgtcctcgctggcaaacgcctgaagaagtt 343 ||||||| ||||| |||||||| |||| ||||||||||||||| Sbjct: 989 acagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
>ref|XM_705406.1| Candida albicans SC5314 hypothetical protein (CaO19.6327), mRNA Length = 594 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 gcaattacaaaagtggttaga 31 ||||||||||||||||||||| Sbjct: 504 gcaattacaaaagtggttaga 524
>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence Length = 180221 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 atggcatagaaccctcctaat 407 ||||||||||||||||||||| Sbjct: 15003 atggcatagaaccctcctaat 14983
>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds Length = 2557 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 tgtgcctgaaccttgggtgcctca 387 |||||||||||||||| ||||||| Sbjct: 2466 tgtgcctgaaccttggatgcctca 2443
>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence Length = 198636 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 acagacatggagtaattcta 261 |||||||||||||||||||| Sbjct: 133750 acagacatggagtaattcta 133769
>gb|AC132914.7| Mus musculus chromosome 1, clone RP24-318M2, complete sequence Length = 157264 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 aacagtcacaaataataacacagc 230 |||||||||||||||||| ||||| Sbjct: 129658 aacagtcacaaataataaaacagc 129635
>gb|AC131919.13| Mus musculus chromosome 15, clone RP24-239J20, complete sequence Length = 177896 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aaacacagatataaaacaga 50 |||||||||||||||||||| Sbjct: 60642 aaacacagatataaaacaga 60661
>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence Length = 189666 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 acagacatggagtaattcta 261 |||||||||||||||||||| Sbjct: 164883 acagacatggagtaattcta 164864
>gb|BC070747.1| Xenopus laevis hypothetical protein MGC83751, mRNA (cDNA clone MGC:83751 IMAGE:6640465), complete cds Length = 2200 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gacagacatggagtaattct 260 |||||||||||||||||||| Sbjct: 923 gacagacatggagtaattct 904
>gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome 13, complete sequence Length = 200156 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 accacagaaaccagtcaagcagga 73 ||||||||||||||| |||||||| Sbjct: 141971 accacagaaaccagtgaagcagga 141948
>emb|CT030278.1| Xenopus tropicalis finished cDNA, clone TEgg068n01 Length = 2184 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gacagacatggagtaattct 260 |||||||||||||||||||| Sbjct: 896 gacagacatggagtaattct 877
>gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, complete sequence Length = 196300 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cagaccacagaaaccagtca 66 |||||||||||||||||||| Sbjct: 26063 cagaccacagaaaccagtca 26044
>emb|X77646.2|TMPLA2ANI Trimeresurus mucrosquamatus phospholipase A2 antiplatelet protein mRNA Length = 445 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ggcgttgaaggcaacctgtg 367 |||||||||||||||||||| Sbjct: 53 ggcgttgaaggcaacctgtg 72
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 tgtgcctgaaccttgggtgcctca 387 |||||||||||||||| ||||||| Sbjct: 57053 tgtgcctgaaccttggatgcctca 57030
>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4, complete sequence Length = 150030 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gatatttcatcaacatgctt 113 |||||||||||||||||||| Sbjct: 139743 gatatttcatcaacatgctt 139762
>gb|AC087465.5| Homo sapiens chromosome 15, clone RP11-94P14, complete sequence Length = 163320 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttccaaaacctggcaagtca 131 |||||||||||||||||||| Sbjct: 22717 ttccaaaacctggcaagtca 22698
>ref|NM_207096.1| Danio rerio wingless-type MMTV integration site family, member 16 (wnt16), mRNA Length = 2005 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gatatttcatcaacatgctt 113 |||||||||||||||||||| Sbjct: 1314 gatatttcatcaacatgctt 1295
>dbj|AK040806.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530026G17 product:similar to COMPLEMENT COMPONENT C7 PRECURSOR [Homo sapiens], full insert sequence Length = 2581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 aaacacagatataaaacaga 50 |||||||||||||||||||| Sbjct: 2207 aaacacagatataaaacaga 2188
>emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2560 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 tgtgcctgaaccttgggtgcctca 387 |||||||||||||||| ||||||| Sbjct: 2470 tgtgcctgaaccttggatgcctca 2447
>gb|BC066432.1| Danio rerio wingless-type MMTV integration site family, member 16, mRNA (cDNA clone MGC:77293 IMAGE:6965366), complete cds Length = 2005 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gatatttcatcaacatgctt 113 |||||||||||||||||||| Sbjct: 1314 gatatttcatcaacatgctt 1295
>gb|AC115020.11| Mus musculus chromosome 1, clone RP24-231D14, complete sequence Length = 188569 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cagaccacagaaaccagtca 66 |||||||||||||||||||| Sbjct: 41164 cagaccacagaaaccagtca 41183
>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete sequence Length = 255133 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 accacagaaaccagtcaagcagga 73 ||||||||||||||| |||||||| Sbjct: 224816 accacagaaaccagtgaagcagga 224793
>emb|CR847828.13| Zebrafish DNA sequence from clone DKEY-36I7 in linkage group 15, complete sequence Length = 107420 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aaaaatgcaattacaaaagt 24 |||||||||||||||||||| Sbjct: 2977 aaaaatgcaattacaaaagt 2958
>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence Length = 206740 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gaccacagaaaccagtcaag 68 |||||||||||||||||||| Sbjct: 69194 gaccacagaaaccagtcaag 69175
>gb|AC168209.7| Mus musculus chromosome 5, clone RP24-392C11, complete sequence Length = 140911 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aaacacagatataaaacaga 50 |||||||||||||||||||| Sbjct: 87555 aaacacagatataaaacaga 87574 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,819,313 Number of Sequences: 3902068 Number of extensions: 3819313 Number of successful extensions: 100908 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100832 Number of HSP's gapped (non-prelim): 71 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)