ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7 30 1.1
2AHNK_HUMAN (Q09666) Neuroblast differentiation-associated protei... 30 1.8
3MAGE1_HUMAN (Q9HCI5) Melanoma-associated antigen E1 (MAGE-E1 ant... 29 3.1
4PA2I_VIPAE (P04084) Phospholipase A2 inhibitor (Vipoxin toxic co... 28 4.0
5PA2I_VIPAP (Q8JFG1) Phospholipase A2 inhibitor precursor (Vaspin... 28 4.0
6PA21B_VIPAZ (Q10754) Phospholipase A2, A chain precursor (Phosph... 28 4.0
7ATK4_ARATH (O81635) Kinesin-4 (Kinesin-like protein D) 28 5.2
8LHR2A_RAT (Q75WE7) Loss of heterozygosity 11 chromosomal region ... 28 5.2
9PPK_STAS1 (Q4A040) Polyphosphate kinase (EC 2.7.4.1) (Polyphosph... 28 6.8
10CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like m... 27 8.9
11IAA31_ORYSA (P0C133) Auxin-responsive protein IAA31 (Indoleaceti... 27 8.9

>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 160 PSAIPCSSTICPQLQSRFTSRLLPSLPGIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQ 339
           PS  P  S   P   +  TS    +       ASTL P    DT+GS S+    P  S  
Sbjct: 374 PSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433

Query: 340 ISS 348
           ++S
Sbjct: 434 LAS 436



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>AHNK_HUMAN (Q09666) Neuroblast differentiation-associated protein AHNAK|
            (Desmoyokin) (Fragments)
          Length = 2960

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 226  LPSLPGIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQISSASLK 360
            +PSL G G +    LPK  +D SG K   I+ PD S +     LK
Sbjct: 889  MPSLKGEGPEVDVNLPKADVDVSGPKVD-IEAPDVSLEGPEGKLK 932



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>MAGE1_HUMAN (Q9HCI5) Melanoma-associated antigen E1 (MAGE-E1 antigen)|
           (Hepatocellular carcinoma-associated protein 1)
          Length = 957

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +1

Query: 157 PPSAIPCSSTICPQLQSRFTSRLLPSLPGIGNDASTLLPKQTLDTSGSKSTLIKRPDESQ 336
           PP++    ST  P   S   S  LP  PG G   ST +P    +  G  ++++  PDE  
Sbjct: 141 PPTSSEEPSTSVPPTASEVPSTSLPPTPGEG--TSTSVPPTAYE--GPSTSVVPTPDEGP 196

Query: 337 QIS 345
             S
Sbjct: 197 STS 199



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>PA2I_VIPAE (P04084) Phospholipase A2 inhibitor (Vipoxin toxic component)|
           (Vipoxin A chain) (Inh)
          Length = 122

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 377 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 258
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 62  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 101



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>PA2I_VIPAP (Q8JFG1) Phospholipase A2 inhibitor precursor (Vaspin A chain)|
          Length = 138

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 377 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 258
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 78  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 117



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>PA21B_VIPAZ (Q10754) Phospholipase A2, A chain precursor (Phospholipase A2|
           inhibitor) (PLA2-I complex A chain) (Vaspin A chain)
          Length = 138

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 377 ACYTDSFNEAELIC*DSSGLLISVLLEPEVSSVCLGSRVD 258
           A YT SF   +++C D+   L +V      +++CLG  V+
Sbjct: 78  ATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGENVN 117



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>ATK4_ARATH (O81635) Kinesin-4 (Kinesin-like protein D)|
          Length = 987

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 160 PSAIPCSSTICPQLQSRFTSRLLPSLPGIGNDASTLLPKQTLDTSGSKS 306
           P+AIP +     + +S  T  + P LP +GN ++   P Q +D SG ++
Sbjct: 760 PTAIPINRERISRRRSLETPTIRPKLPTMGNTSNNSRP-QIMDLSGPEA 807



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>LHR2A_RAT (Q75WE7) Loss of heterozygosity 11 chromosomal region 2 gene A|
           protein homolog (Mast cell surface antigen 1) (Masa-1)
          Length = 822

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 241 GIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQISSASLKLSV 369
           GIG  AST L K     SG  +  I   D  Q  +  SLKL++
Sbjct: 420 GIGQGASTSLIKNIARVSGGTAEFITGKDRMQAKALGSLKLAL 462



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>PPK_STAS1 (Q4A040) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 719

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 160 PSAIPCSSTICPQLQSRFTSRLLPSLPGIGNDASTLLPK 276
           P  +P    + PQL+S F   +LP+L  +G DA    PK
Sbjct: 124 PEQLP--DDLLPQLESEFKYGILPTLTPLGIDAYHPFPK 160



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>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
 Frame = +2

Query: 200 FRADLPLG---------CCLRCQG*GMMHPPCFPSKHLTLQVLKAHLSRDQTSLNKSAQL 352
           F   LPLG         CCLR  G   +H P F S    L + K+ L+ D+        L
Sbjct: 267 FTQRLPLGYELHMGKERCCLR--GLDHLHGPTFHSICGNLMIYKSSLTNDRLMFEHDESL 324

Query: 353 H 355
           H
Sbjct: 325 H 325



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>IAA31_ORYSA (P0C133) Auxin-responsive protein IAA31 (Indoleacetic acid-induced|
           protein 31)
          Length = 197

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 235 LPGIGNDASTLLPKQTLDTSGSKSTLIKRPDESQQISSASLKLSV*QAPWPP 390
           LPG   +A+   P  +   +GSK  L   PD+++   +A+ K  V    WPP
Sbjct: 13  LPGTEEEAA---PPPSTPRAGSKRALAGEPDQAKIKPAAAAKAQV--VGWPP 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,622,219
Number of Sequences: 219361
Number of extensions: 907391
Number of successful extensions: 2377
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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