ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33h09 |
|---|---|
| Clone Library Name | barley_pub |
>CCA_STAAW (Q8NWP0) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 400 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -3 Query: 379 LRVDGGVLHIHGNVNNSDEARWLDNVVESISSIATAHGLSWKVSLEHVERVKWYGPHIR 203 + V+GGVL H N + WL +V+ I IA G KVS E E +KW H++ Sbjct: 348 MMVNGGVLMAHLNAKSGP---WLKDVLRQIE-IAIVTG---KVSNEETEILKWVDNHVK 399
>CCA_STAAS (Q6G9A5) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 400 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -3 Query: 379 LRVDGGVLHIHGNVNNSDEARWLDNVVESISSIATAHGLSWKVSLEHVERVKWYGPHIR 203 + V+GGVL H N + WL +V+ I IA G KVS E E +KW H++ Sbjct: 348 MMVNGGVLMAHLNAKSGP---WLKDVLRQIE-IAIVTG---KVSNEETEILKWVDNHVK 399
>CCA_STAAN (Q7A5K2) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 400 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -3 Query: 379 LRVDGGVLHIHGNVNNSDEARWLDNVVESISSIATAHGLSWKVSLEHVERVKWYGPHIR 203 + V+GGVL H N + WL +V+ I IA G KVS E E +KW H++ Sbjct: 348 MMVNGGVLMAHLNAKSGP---WLKDVLRQIE-IAIVTG---KVSNEETEILKWVDNHVK 399
>CCA_STAAM (Q99U32) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 400 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -3 Query: 379 LRVDGGVLHIHGNVNNSDEARWLDNVVESISSIATAHGLSWKVSLEHVERVKWYGPHIR 203 + V+GGVL H N + WL +V+ I IA G KVS E E +KW H++ Sbjct: 348 MMVNGGVLMAHLNAKSGP---WLKDVLRQIE-IAIVTG---KVSNEETEILKWVDNHVK 399
>CCA_STAAC (Q5HFW6) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 400 Score = 32.0 bits (71), Expect = 0.36 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -3 Query: 379 LRVDGGVLHIHGNVNNSDEARWLDNVVESISSIATAHGLSWKVSLEHVERVKWYGPHIR 203 + V+GGVL H N + WL +V+ I IA G KVS E E +KW H++ Sbjct: 348 MMVNGGVLMAHLNAKSGP---WLKDVLRQIE-IAIVTG---KVSNEETEILKWVDNHVK 399
>CCA_STAAR (Q6GGV2) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 400 Score = 30.8 bits (68), Expect = 0.81 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = -3 Query: 379 LRVDGGVLHIHGNVNNSDEARWLDNVVESISSIATAHGLSWKVSLEHVERVKWYGPHIR 203 + V+GGVL H N + WL +++ I IA G KVS E E +KW H++ Sbjct: 348 MMVNGGVLMAHLNAKSGP---WLKDLLRQIE-IAIVTG---KVSNEETEILKWVDNHVK 399
>RL37_RAT (P61928) 60S ribosomal protein L37| Length = 96 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Frame = +3 Query: 195 TKCRMCGP--YHLTRSTCSK 248 T CR CG YHL +STC K Sbjct: 16 TLCRRCGSKAYHLQKSTCGK 35
>RL37_MOUSE (Q9D823) 60S ribosomal protein L37| Length = 96 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Frame = +3 Query: 195 TKCRMCGP--YHLTRSTCSK 248 T CR CG YHL +STC K Sbjct: 16 TLCRRCGSKAYHLQKSTCGK 35
>RL37_ICTPU (Q90YT1) 60S ribosomal protein L37| Length = 96 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Frame = +3 Query: 195 TKCRMCGP--YHLTRSTCSK 248 T CR CG YHL +STC K Sbjct: 16 TLCRRCGSKAYHLQKSTCGK 35
>RL37_HUMAN (P61927) 60S ribosomal protein L37 (G1.16)| Length = 96 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Frame = +3 Query: 195 TKCRMCGP--YHLTRSTCSK 248 T CR CG YHL +STC K Sbjct: 16 TLCRRCGSKAYHLQKSTCGK 35
>RL37_BOVIN (P79244) 60S ribosomal protein L37 (Fragment)| Length = 92 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Frame = +3 Query: 195 TKCRMCGP--YHLTRSTCSK 248 T CR CG YHL +STC K Sbjct: 16 TLCRRCGSKAYHLQKSTCGK 35
>UNC6_CAEEL (P34710) Netrin unc-6 precursor (Uncoordinated protein 6)| Length = 612 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 180 HLTSATKCRMCGPYHLTR 233 H T+ T+C MC P+H R Sbjct: 314 HNTAGTECEMCKPFHYDR 331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,966,022 Number of Sequences: 219361 Number of extensions: 1057968 Number of successful extensions: 3308 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3308 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
