ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478402.1| Oryza sativa (japonica cultivar-group), mRNA 119 7e-24
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
3dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
4gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complet... 46 0.087
5gb|AC154090.19| Medicago truncatula clone mth2-92k14, complete s... 44 0.34
6gb|AC103864.2| Homo sapiens chromosome 8, clone RP11-192P9, comp... 44 0.34
7gb|AC019246.6|AC019246 Homo sapiens, clone RP11-2K18, complete s... 44 0.34
8gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 42 1.4
9gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3... 42 1.4
10ref|XM_414371.1| PREDICTED: Gallus gallus similar to TXNRD3 prot... 42 1.4
11gb|AC093341.5| Mus musculus chromosome 5, clone RP23-7E4, comple... 42 1.4
12ref|XM_989637.1| PREDICTED: Mus musculus similar to Antigen KI-6... 42 1.4
13ref|XM_001000692.1| PREDICTED: Mus musculus antigen identified b... 42 1.4
14ref|XM_133912.7| PREDICTED: Mus musculus antigen identified by m... 42 1.4
15ref|XM_820610.1| Trypanosoma brucei TREU927 clone RPCI93-27M3 hy... 42 1.4
16gb|AC134535.4| Mus musculus BAC clone RP24-371E20 from chromosom... 42 1.4
17emb|Z70034.1|CEC18E9 Caenorhabditis elegans Cosmid C18E9, comple... 42 1.4
18gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosom... 42 1.4
19emb|X82786.1|MMKI67 M.musculus mRNA for Ki-67 42 1.4
20dbj|AK160349.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 42 1.4
21ref|NM_001026806.1| Caenorhabditis elegans Prion-like-(Q/N-rich)... 42 1.4
22ref|NM_063509.1| Caenorhabditis elegans Prion-like-(Q/N-rich)-do... 42 1.4
23ref|NM_063508.3| Caenorhabditis elegans Prion-like-(Q/N-rich)-do... 42 1.4
24emb|CR338810.1| Gallus gallus finished cDNA, clone ChEST968j1 42 1.4
25gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 42 1.4
26gb|AC152926.1| Tribolium castaneum BAC T.cast_C1K1 (Clemson Uni... 40 5.4
27gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, comp... 40 5.4
28emb|AL161894.12| Human DNA sequence from clone RP11-23B16 on chr... 40 5.4
29gb|AC104036.8| Homo sapiens chromosome 8, clone RP11-665N23, com... 40 5.4
30gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete... 40 5.4
31emb|BX005462.10| Zebrafish DNA sequence from clone CH211-158D24 ... 40 5.4
32gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromoso... 40 5.4
33gb|AC013354.6|AC013354 Genomic sequence for Arabidopsis thaliana... 40 5.4
34gb|AC096565.1| Homo sapiens BAC clone RP11-287O8 from 2, complet... 40 5.4
35emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress re... 40 5.4
36gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q... 40 5.4
37emb|CR942675.2| Xenopus tropicalis finished cDNA, clone TNeu022o10 40 5.4
38gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 ma... 40 5.4
39emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chr... 40 5.4
40dbj|AP005358.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.4
41emb|AL691418.9| Mouse DNA sequence from clone RP23-193L14 on chr... 40 5.4
42dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.4 
>ref|XM_478402.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3132

 Score =  119 bits (60), Expect = 7e-24
 Identities = 147/176 (83%)
 Strand = Plus / Minus

                                                                        
Query: 219  taccatttgactcgttcgacatgctccaaagagactttccaagacagtccatgagctgtc 278
            ||||||||||| ||||||||||||||||  | ||| ||||||||||||||||| | | | 
Sbjct: 3080 taccatttgacgcgttcgacatgctccaccgtgacgttccaagacagtccatgtgttttg 3021

                                                                        
Query: 279  gcaatgctactgatcgattcaacaacattgtccaaccagcgtgcctcatctgagttgttg 338
            |||||| || |||| || | ||||||||||||||||||| | | |||||| |||| ||||
Sbjct: 3020 gcaatgttagtgatggacttaacaacattgtccaaccagagcgactcatccgagtcgttg 2961

                                                                    
Query: 339  acgttcccatgtatatgtaatacgcctccgtcaacccttaaagccctaacagcagt 394
            || ||||||||||| || |  | ||| || ||| ||||||||||||| ||||||||
Sbjct: 2960 acattcccatgtatgtgcagcatgccaccttcagcccttaaagccctcacagcagt 2905
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 93/113 (82%)
 Strand = Plus / Minus

                                                                            
Query: 156      ctttcgctttgtcagtttgatccgcatctgacatcagctacaaaatgtcgaatgtgtggc 215
                |||||||||||| || |||  | |||| |||||||| | || | |||||| || || || 
Sbjct: 19715007 ctttcgctttgttaggttgcccggcatttgacatcaaccacgagatgtcgtatatgcgga 19714948

                                                                     
Query: 216      ccataccatttgactcgttcgacatgctccaaagagactttccaagacagtcc 268
                || ||||||||||| ||||||||||||||||  | ||| ||||||||||||||
Sbjct: 19714947 ccgtaccatttgacgcgttcgacatgctccaccgtgacgttccaagacagtcc 19714895



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 299      aacaacattgtccaaccagcgtgcctcatctgagttgttgacgttcccatgtat 352
                ||||||||||||||||||| | | |||||| |||| |||||| |||||||||||
Sbjct: 19714767 aacaacattgtccaaccagagcgactcatccgagtcgttgacattcccatgtat 19714714
to top
>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0048D08
          Length = 145772

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 93/113 (82%)
 Strand = Plus / Minus

                                                                         
Query: 156   ctttcgctttgtcagtttgatccgcatctgacatcagctacaaaatgtcgaatgtgtggc 215
             |||||||||||| || |||  | |||| |||||||| | || | |||||| || || || 
Sbjct: 47013 ctttcgctttgttaggttgcccggcatttgacatcaaccacgagatgtcgtatatgcgga 46954

                                                                  
Query: 216   ccataccatttgactcgttcgacatgctccaaagagactttccaagacagtcc 268
             || ||||||||||| ||||||||||||||||  | ||| ||||||||||||||
Sbjct: 46953 ccgtaccatttgacgcgttcgacatgctccaccgtgacgttccaagacagtcc 46901



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 299   aacaacattgtccaaccagcgtgcctcatctgagttgttgacgttcccatgtat 352
             ||||||||||||||||||| | | |||||| |||| |||||| |||||||||||
Sbjct: 46773 aacaacattgtccaaccagagcgactcatccgagtcgttgacattcccatgtat 46720
to top
>gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complete sequence
          Length = 83007

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 35   caacatacatggtttcattctct 57
            |||||||||||||||||||||||
Sbjct: 3441 caacatacatggtttcattctct 3463
to top
>gb|AC154090.19| Medicago truncatula clone mth2-92k14, complete sequence
          Length = 117932

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 179   gcatctgacatcagctacaaaatgtcgaatgtgtggcccataccatttgactcgttcgac 238
             |||||| ||||| || ||||  || |||||||||||  |||||||||| |||| ||| ||
Sbjct: 25352 gcatctcacatctgcaacaacgtggcgaatgtgtggagcataccatttcactctttcaac 25411

                   
Query: 239   atgctc 244
             ||||||
Sbjct: 25412 atgctc 25417
to top
>gb|AC103864.2| Homo sapiens chromosome 8, clone RP11-192P9, complete sequence
          Length = 164867

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 374   ccttaaagccctaacagcagta 395
             ||||||||||||||||||||||
Sbjct: 27752 ccttaaagccctaacagcagta 27731
to top
>gb|AC019246.6|AC019246 Homo sapiens, clone RP11-2K18, complete sequence
          Length = 154984

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 374   ccttaaagccctaacagcagta 395
             ||||||||||||||||||||||
Sbjct: 39963 ccttaaagccctaacagcagta 39942
to top
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 317     gcgtgcctcatctgagttgtt 337
               |||||||||||||||||||||
Sbjct: 1004517 gcgtgcctcatctgagttgtt 1004537
to top
>gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3, complete sequence
          Length = 127380

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 317   gcgtgcctcatctgagttgtt 337
             |||||||||||||||||||||
Sbjct: 46518 gcgtgcctcatctgagttgtt 46538
to top
>ref|XM_414371.1| PREDICTED: Gallus gallus similar to TXNRD3 protein (LOC416031), mRNA
          Length = 3315

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 237  acatgctccaaagagactttc 257
            |||||||||||||||||||||
Sbjct: 3053 acatgctccaaagagactttc 3033
to top
>gb|AC093341.5| Mus musculus chromosome 5, clone RP23-7E4, complete sequence
          Length = 220668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   taaaacagaccattttcagct 154
             |||||||||||||||||||||
Sbjct: 37319 taaaacagaccattttcagct 37299
to top
>ref|XM_989637.1| PREDICTED: Mus musculus similar to Antigen KI-67 (LOC638774), mRNA
          Length = 3791

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 245  caaagagactttccaagacag 265
            |||||||||||||||||||||
Sbjct: 1007 caaagagactttccaagacag 1027
to top
>ref|XM_001000692.1| PREDICTED: Mus musculus antigen identified by monoclonal antibody Ki
            67 (Mki67), mRNA
          Length = 9156

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 245  caaagagactttccaagacag 265
            |||||||||||||||||||||
Sbjct: 6261 caaagagactttccaagacag 6281
to top
>ref|XM_133912.7| PREDICTED: Mus musculus antigen identified by monoclonal antibody Ki
            67, transcript variant 1 (Mki67), mRNA
          Length = 9394

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 245  caaagagactttccaagacag 265
            |||||||||||||||||||||
Sbjct: 6499 caaagagactttccaagacag 6519
to top
>ref|XM_820610.1| Trypanosoma brucei TREU927 clone RPCI93-27M3 hypothetical protein
            (Tb927.5.3230) partial mRNA
          Length = 6546

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 317  gcgtgcctcatctgagttgtt 337
            |||||||||||||||||||||
Sbjct: 3230 gcgtgcctcatctgagttgtt 3210
to top
>gb|AC134535.4| Mus musculus BAC clone RP24-371E20 from chromosome 7, complete
            sequence
          Length = 214571

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 245  caaagagactttccaagacag 265
            |||||||||||||||||||||
Sbjct: 2267 caaagagactttccaagacag 2247
to top
>emb|Z70034.1|CEC18E9 Caenorhabditis elegans Cosmid C18E9, complete sequence
          Length = 34024

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 3    caaaacatgcttccttcttttcttc 27
            ||||| |||||||||||||||||||
Sbjct: 8776 caaaaaatgcttccttcttttcttc 8800
to top
>gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosome 7, complete sequence
          Length = 157795

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    caaagagactttccaagacag 265
              |||||||||||||||||||||
Sbjct: 130736 caaagagactttccaagacag 130716
to top
>emb|X82786.1|MMKI67 M.musculus mRNA for Ki-67
          Length = 9471

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 245  caaagagactttccaagacag 265
            |||||||||||||||||||||
Sbjct: 6569 caaagagactttccaagacag 6589
to top
>dbj|AK160349.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430002M03
           product:unclassifiable, full insert sequence
          Length = 1117

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 245 caaagagactttccaagacag 265
           |||||||||||||||||||||
Sbjct: 308 caaagagactttccaagacag 328
to top
>ref|NM_001026806.1| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein
           family member (pqn-14) (pqn-14) mRNA, complete cds
          Length = 1750

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 3   caaaacatgcttccttcttttcttc 27
           ||||| |||||||||||||||||||
Sbjct: 203 caaaaaatgcttccttcttttcttc 179
to top
>ref|NM_063509.1| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein
           family member (pqn-14) (pqn-14) mRNA, complete cds
          Length = 1857

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 3   caaaacatgcttccttcttttcttc 27
           ||||| |||||||||||||||||||
Sbjct: 310 caaaaaatgcttccttcttttcttc 286
to top
>ref|NM_063508.3| Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein
           family member (pqn-14) (pqn-14) mRNA, complete cds
          Length = 2142

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 3   caaaacatgcttccttcttttcttc 27
           ||||| |||||||||||||||||||
Sbjct: 319 caaaaaatgcttccttcttttcttc 295
to top
>emb|CR338810.1| Gallus gallus finished cDNA, clone ChEST968j1
          Length = 921

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 237 acatgctccaaagagactttc 257
           |||||||||||||||||||||
Sbjct: 659 acatgctccaaagagactttc 639
to top
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 142     accattttcagctgctttcgc 162
               |||||||||||||||||||||
Sbjct: 1211890 accattttcagctgctttcgc 1211910
to top
>gb|AC152926.1| Tribolium castaneum  BAC T.cast_C1K1 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 130658

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   cccaagtataaaacagacca 145
             ||||||||||||||||||||
Sbjct: 84617 cccaagtataaaacagacca 84598
to top
>gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, complete sequence
          Length = 181799

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   ataaaacagaccattttcag 152
             ||||||||||||||||||||
Sbjct: 56040 ataaaacagaccattttcag 56059
to top
>emb|AL161894.12| Human DNA sequence from clone RP11-23B16 on chromosome 13, complete
             sequence
          Length = 106083

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    cttccttcttttcttctatt 31
             ||||||||||||||||||||
Sbjct: 30479 cttccttcttttcttctatt 30460
to top
>gb|AC104036.8| Homo sapiens chromosome 8, clone RP11-665N23, complete sequence
          Length = 183763

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     cttccttcttttcttctatt 31
              ||||||||||||||||||||
Sbjct: 106216 cttccttcttttcttctatt 106235
to top
>gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete sequence
          Length = 168829

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     atgcttccttcttttcttct 28
             ||||||||||||||||||||
Sbjct: 19944 atgcttccttcttttcttct 19963
to top
>emb|BX005462.10| Zebrafish DNA sequence from clone CH211-158D24 in linkage group 8,
              complete sequence
          Length = 175315

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     tctctgatgaataacaaaaatctt 76
              |||||||||||||| |||||||||
Sbjct: 101931 tctctgatgaataagaaaaatctt 101954
to top
>gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromosome 7, complete
             sequence
          Length = 212458

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   ataaaacagaccattttcag 152
             ||||||||||||||||||||
Sbjct: 94803 ataaaacagaccattttcag 94784
to top
>gb|AC013354.6|AC013354 Genomic sequence for Arabidopsis thaliana BAC F15H18 from chromosome I,
             complete sequence
          Length = 95327

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ctcaaattcaaaatccccaa 130
             ||||||||||||||||||||
Sbjct: 16836 ctcaaattcaaaatccccaa 16817
to top
>gb|AC096565.1| Homo sapiens BAC clone RP11-287O8 from 2, complete sequence
          Length = 172515

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ttccttcttttcttctattg 32
              ||||||||||||||||||||
Sbjct: 161567 ttccttcttttcttctattg 161586
to top
>emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress responsive gene protein 6, exons
            1-11, cultivar Morex
          Length = 4197

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 135  aaaacagaccattttcagctgctt 158
            ||||||||||| ||||||||||||
Sbjct: 2086 aaaacagaccagtttcagctgctt 2063
to top
>gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q21.1-q21.2, complete sequence
          Length = 144659

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    ataaaacagaccattttcag 152
              ||||||||||||||||||||
Sbjct: 110104 ataaaacagaccattttcag 110123
to top
>emb|CR942675.2| Xenopus tropicalis finished cDNA, clone TNeu022o10
          Length = 2646

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 301  caacattgtccaaccagcgtgcctcatc 328
            ||||||||  ||||||||||||||||||
Sbjct: 1420 caacattggacaaccagcgtgcctcatc 1393
to top
>gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 map 4q25, complete sequence
          Length = 143391

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    tgcttccttcttttcttctattgt 33
             |||||||||||||||| |||||||
Sbjct: 35019 tgcttccttcttttctcctattgt 34996
to top
>emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chromosome 4, complete
              sequence
          Length = 183261

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    agactttccaagacagtcca 269
              ||||||||||||||||||||
Sbjct: 177661 agactttccaagacagtcca 177642
to top
>dbj|AP005358.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1356F10, complete
             sequence
          Length = 159115

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    cttccttcttttcttctatt 31
             ||||||||||||||||||||
Sbjct: 73799 cttccttcttttcttctatt 73818
to top
>emb|AL691418.9| Mouse DNA sequence from clone RP23-193L14 on chromosome X, complete
              sequence
          Length = 214219

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     tacaacatacatggtttcattctc 56
              |||||||||| |||||||||||||
Sbjct: 110982 tacaacatacttggtttcattctc 111005
to top
>dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1241F12
          Length = 142424

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   tataaaacagaccattttca 151
             ||||||||||||||||||||
Sbjct: 83458 tataaaacagaccattttca 83439


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,461,005
Number of Sequences: 3902068
Number of extensions: 4461005
Number of successful extensions: 90260
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90130
Number of HSP's gapped (non-prelim): 129
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top