ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NEUM_BUFJA (P08162) Mesotocin-neurophysin MT precursor [Contains... 31 1.7
2CN12L_CAEEL (Q95QU0) CSN12-like protein 28 8.6

>NEUM_BUFJA (P08162) Mesotocin-neurophysin MT precursor [Contains: Mesotocin|
           (MT); Neurophysin MT]
          Length = 125

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 166 TPCFSSRKPPINTGPHTHLSKLCCAHDS 249
           +PC S RKP  N G +   S +CC H+S
Sbjct: 84  SPCESGRKPCGNNGGNCARSGICCNHES 111



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>CN12L_CAEEL (Q95QU0) CSN12-like protein|
          Length = 413

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 168 RTSLFLDSQDLVKPSLFYAFRNCSIPSFQN 79
           R ++F    +L + SL YAFRNC   S  N
Sbjct: 230 RKAMFDADLNLAEKSLLYAFRNCPADSMSN 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,442,823
Number of Sequences: 219361
Number of extensions: 951019
Number of successful extensions: 1914
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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