Clone Name | rbastl33h08 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 346 gcttcttctttttccttctctcgcccccacccgacctatccgaccgcttcgactgctcct 405 |||| |||||||||||| | || ||||| | ||||||||||| || | || || |||| Sbjct: 2833116 gctttttctttttccttttttcagccccatctgacctatccgatcgtcttgattgttcct 2833057 Query: 406 gcctgatctccatgagcttcgc 427 ||||||||||||| |||||||| Sbjct: 2833056 gcctgatctccatcagcttcgc 2833035
>gb|AY224574.1| Oryza sativa (japonica cultivar-group) isolate 29961 WD repeat protein mRNA, partial cds Length = 687 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 346 gcttcttctttttccttctctcgcccccacccgacctatccgaccgcttcgactgctcct 405 |||| |||||||||||| | || ||||| | ||||||||||| || | || || |||| Sbjct: 664 gctttttctttttccttttttcagccccatctgacctatccgatcgtcttgattgttcct 605 Query: 406 gcctgatctccatgagcttcgc 427 ||||||||||||| |||||||| Sbjct: 604 gcctgatctccatcagcttcgc 583
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 346 gcttcttctttttccttctctcgcccccacccgacctatccgaccgcttcgactgctcct 405 |||| |||||||||||| | || ||||| | ||||||||||| || | || || |||| Sbjct: 2833227 gctttttctttttccttttttcagccccatctgacctatccgatcgtcttgattgttcct 2833168 Query: 406 gcctgatctccatgagcttcgc 427 ||||||||||||| |||||||| Sbjct: 2833167 gcctgatctccatcagcttcgc 2833146
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 346 gcttcttctttttccttctctcgcccccacccgacctatccgaccgcttcgactgctcct 405 |||| |||||||||||| | || ||||| | ||||||||||| || | || || |||| Sbjct: 105072 gctttttctttttccttttttcagccccatctgacctatccgatcgtcttgattgttcct 105013 Query: 406 gcctgatctccatgagcttcgc 427 ||||||||||||| |||||||| Sbjct: 105012 gcctgatctccatcagcttcgc 104991
>dbj|AK111951.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E04, full insert sequence Length = 1329 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 346 gcttcttctttttccttctctcgcccccacccgacctatccgaccgcttcgactgctcct 405 |||| |||||||||||| | || ||||| | ||||||||||| || | || || |||| Sbjct: 1157 gctttttctttttccttttttcagccccatctgacctatccgatcgtcttgattgttcct 1098 Query: 406 gcctgatctccatgagcttcgc 427 ||||||||||||| |||||||| Sbjct: 1097 gcctgatctccatcagcttcgc 1076
>dbj|AK101270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032N04, full insert sequence Length = 3109 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 346 gcttcttctttttccttctctcgcccccacccgacctatccgaccgcttcgactgctcct 405 |||| |||||||||||| | || ||||| | ||||||||||| || | || || |||| Sbjct: 2869 gctttttctttttccttttttcagccccatctgacctatccgatcgtcttgattgttcct 2810 Query: 406 gcctgatctccatgagcttcgc 427 ||||||||||||| |||||||| Sbjct: 2809 gcctgatctccatcagcttcgc 2788
>gb|AC127364.3| Mus musculus BAC clone RP23-3F6 from chromosome 1, complete sequence Length = 204558 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 209 cacacacacatctctcaaaattgt 232 |||||||||||||||||||||||| Sbjct: 95891 cacacacacatctctcaaaattgt 95868
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 gaaagcataaaaaagggaaggt 130 |||||||||||||||||||||| Sbjct: 3235729 gaaagcataaaaaagggaaggt 3235708
>gb|AC146939.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064M09 map near S6115, complete sequence Length = 215240 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctctc 367 ||||||||||||||||||||| Sbjct: 107429 cttcttctttttccttctctc 107449
>gb|U00032.2| Caenorhabditis elegans cosmid F37A4, complete sequence Length = 50335 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 346 gcttcttctttttccttctct 366 ||||||||||||||||||||| Sbjct: 20029 gcttcttctttttccttctct 20009
>gb|AC138364.8| Mus musculus chromosome 7, clone RP23-243D10, complete sequence Length = 199717 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 gcttcttctttttccttctct 366 ||||||||||||||||||||| Sbjct: 127200 gcttcttctttttccttctct 127220
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 tgcaatttctgaaagcataaa 119 ||||||||||||||||||||| Sbjct: 748580 tgcaatttctgaaagcataaa 748560
>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3 Contains part of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and the ANGPTL2 gene for angiopoietin-like 2 (angiopoietin-related protein 2)(ARP2, HARP), complete sequence Length = 145481 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctctc 367 ||||||||||||||||||||| Sbjct: 10262 cttcttctttttccttctctc 10282
>emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chromosome 1 Contains a novel gene, complete sequence Length = 203279 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctctc 367 ||||||||||||||||||||| Sbjct: 105133 cttcttctttttccttctctc 105113
>emb|Z35768.1|SCYBL007C S.cerevisiae chromosome II reading frame ORF YBL007c Length = 4523 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 340 gcttgggcttcttctttttccttctctcg 368 |||||| ||||||||||||||||| |||| Sbjct: 3384 gcttggccttcttctttttccttccctcg 3412
>emb|Z22810.1|SCSLA1PA S.cerevisiae of Sla1p gene, complete CDS Length = 4407 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 340 gcttgggcttcttctttttccttctctcg 368 |||||| ||||||||||||||||| |||| Sbjct: 1268 gcttggccttcttctttttccttccctcg 1240
>gb|S47695.1| YBL03-16=basic motif/leucine zipper domain protein homolog, YBL03-23=multidrug resistance PDR1 protein homolog [Saccharomyces cerevisiae, S288C, Genomic, 10 genes, 12684 nt] Length = 12684 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 340 gcttgggcttcttctttttccttctctcg 368 |||||| ||||||||||||||||| |||| Sbjct: 10195 gcttggccttcttctttttccttccctcg 10223
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctctc 367 ||||||||||||||||||||| Sbjct: 12724753 cttcttctttttccttctctc 12724773
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctctc 367 ||||||||||||||||||||| Sbjct: 12804060 cttcttctttttccttctctc 12804080
>gb|AC084323.28| Mus musculus strain C57BL/6J chromosome 2 clone rp23-403l21, complete sequence Length = 188905 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ctcaaaattgtgctgtgctca 242 ||||||||||||||||||||| Sbjct: 173533 ctcaaaattgtgctgtgctca 173553
>emb|AL833786.8| Mouse DNA sequence from clone RP23-220D12 on chromosome 2, complete sequence Length = 194536 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 ctcaaaattgtgctgtgctca 242 ||||||||||||||||||||| Sbjct: 92033 ctcaaaattgtgctgtgctca 92053
>gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, complete sequence Length = 207418 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 cacacacacatctctcaaaa 228 |||||||||||||||||||| Sbjct: 32898 cacacacacatctctcaaaa 32879
>gb|AC123731.9| Mus musculus chromosome 15, clone RP23-458N23, complete sequence Length = 178222 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctaaaattttgaattccttt 20 |||||||||||||||||||| Sbjct: 94613 ctaaaattttgaattccttt 94594
>gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, complete sequence Length = 187629 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 186518 cttcttctttttccttctct 186537 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 175665 cttcttctttttccttctct 175684 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 164813 cttcttctttttccttctct 164832 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 153955 cttcttctttttccttctct 153974 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 143112 cttcttctttttccttctct 143131 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 104531 cttcttctttttccttctct 104512
>gb|AC141647.3| Mus musculus BAC clone RP23-64E12 from chromosome 10, complete sequence Length = 217745 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 50875 cttcttctttttccttctct 50894
>gb|AC127224.3| Mus musculus BAC clone RP24-498F21 from chromosome 10, complete sequence Length = 162143 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 143543 cttcttctttttccttctct 143562
>gb|AC099594.6| Mus musculus chromosome 15, clone RP23-458G7, complete sequence Length = 220242 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 78026 cttcttctttttccttctct 78007
>gb|AC006338.6| Homo sapiens BAC clone RP11-539D10 from Y, complete sequence Length = 175990 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 12596 cttcttctttttccttctct 12615 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 1748 cttcttctttttccttctct 1767
>gb|AC118211.10| Mus musculus chromosome 8, clone RP24-223O5, complete sequence Length = 192713 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 111375 ttcttctttttccttctctc 111394
>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence Length = 209207 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 90330 cttcttctttttccttctct 90349 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 51745 cttcttctttttccttctct 51726
>gb|AC130543.3| Mus musculus BAC clone RP24-178J22 from chromosome 8, complete sequence Length = 147985 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 145492 ttcttctttttccttctctc 145511
>gb|AC106738.3| Homo sapiens chromosome 16 clone CTD-3032H12, complete sequence Length = 152312 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cccacacacacatctctcaa 226 |||||||||||||||||||| Sbjct: 16016 cccacacacacatctctcaa 15997
>gb|AC122292.4| Mus musculus BAC clone RP23-256J8 from 10, complete sequence Length = 159736 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 130654 cttcttctttttccttctct 130635
>gb|AC079756.4| Homo sapiens BAC clone RP11-108J15 from 7, complete sequence Length = 168347 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 atttctgaaagcataaaaaa 122 |||||||||||||||||||| Sbjct: 118760 atttctgaaagcataaaaaa 118779
>gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete sequence Length = 134674 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 132492 ttcttctttttccttctctc 132473
>gb|AC136954.14| Medicago truncatula clone mth2-7i1, complete sequence Length = 113505 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 ttgggcttcttctttttcct 361 |||||||||||||||||||| Sbjct: 51382 ttgggcttcttctttttcct 51401
>gb|BC100250.1| Rattus norvegicus cDNA clone IMAGE:7444920, with apparent retained intron Length = 2434 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 tctctcaaaattgtgctgtgctca 242 |||| ||||||||||||||||||| Sbjct: 1680 tctcccaaaattgtgctgtgctca 1703
>gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, complete sequence Length = 170201 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 136354 cttcttctttttccttctct 136373 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 125499 cttcttctttttccttctct 125518 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 86925 cttcttctttttccttctct 86906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 76069 cttcttctttttccttctct 76050 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 65228 cttcttctttttccttctct 65209
>gb|AC142301.1| Pan troglodytes BAC clone RP43-127N2 from Y, complete sequence Length = 108043 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 101138 cttcttctttttccttctct 101157 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 90294 cttcttctttttccttctct 90313 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 79439 cttcttctttttccttctct 79458 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 40862 cttcttctttttccttctct 40843 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 30006 cttcttctttttccttctct 29987
>gb|AC139193.1| Pan troglodytes BAC clone RP43-131F11 from Y, complete sequence Length = 36650 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 5357 cttcttctttttccttctct 5338
>emb|AL512656.16| Human DNA sequence from clone RP11-537A6 on chromosome 10 Contains the 3' end of a novel gene (KIAA0974) (FLJ21536), the DNAJC9 gene for DnaJ (Hsp40) homolog subfamily C member 9, three novel genes, the MRPS16 gene for mitochondrial ribosomal protein S16, the gene for tetratricopeptide repeat-containing protein (LOC118491) (FLJ25765), the 3' end of the ANXA7 gene for annexin A7, two novel genes and three CpG islands, complete sequence Length = 162901 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 37394 ttcttctttttccttctctc 37413
>emb|AL356134.14| Human DNA sequence from clone RP11-380F14 on chromosome 9 Contains the 3' end of the SLC28A3 gene for solute carrier family 28 (sodium-coupled nucleoside transporter) member 3 (CTN3) and a novel gene, complete sequence Length = 89703 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 gaaagcataaaaaagggaaggttt 132 ||||||||||||||||||| |||| Sbjct: 23864 gaaagcataaaaaagggaatgttt 23887
>emb|AL035252.5|HS738P15 Human DNA sequence from clone RP4-738P15 on chromosome 20p11.2-11.22 Contains a novel gene (LOC284798), a novel pseudogene, the ENTPD6 gene for ectonucleoside triphosphate diphosphohydrolase 6 (putative function) and two CpG islands, complete sequence Length = 108487 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 ctctcaaaattgtgctgtgc 239 |||||||||||||||||||| Sbjct: 26492 ctctcaaaattgtgctgtgc 26511
>gb|AC158975.9| Mus musculus chromosome 18, clone RP24-192J22, complete sequence Length = 178651 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cacacacacatctctcaaaa 228 |||||||||||||||||||| Sbjct: 1711 cacacacacatctctcaaaa 1730
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 187828 cttcttctttttccttctct 187847
>gb|AC163719.4| Mus musculus BAC clone RP23-421M6 from chromosome 9, complete sequence Length = 177404 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3615 cttcttctttttccttctct 3634
>emb|BX510303.6| Zebrafish DNA sequence from clone DKEY-184B7 in linkage group 13, complete sequence Length = 80122 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 aacactggcccacacacaca 218 |||||||||||||||||||| Sbjct: 41697 aacactggcccacacacaca 41678
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 11296501 cttcttctttttccttctct 11296520 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 11257916 cttcttctttttccttctct 11257897 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3405099 cttcttctttttccttctct 3405118 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3366518 cttcttctttttccttctct 3366499 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3355675 cttcttctttttccttctct 3355656 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3344817 cttcttctttttccttctct 3344798 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3333965 cttcttctttttccttctct 3333946 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3323112 cttcttctttttccttctct 3323093 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3301894 cttcttctttttccttctct 3301875 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3291041 cttcttctttttccttctct 3291022 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3280200 cttcttctttttccttctct 3280181
>dbj|AK095800.1| Homo sapiens cDNA FLJ38481 fis, clone FEBRA2022956 Length = 3159 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ctctcaaaattgtgctgtgc 239 |||||||||||||||||||| Sbjct: 64 ctctcaaaattgtgctgtgc 45
>gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, complete sequence Length = 149726 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 147655 ttcttctttttccttctctc 147674
>gb|AC109136.1| Homo sapiens chromosome 16 clone RP11-629D22, complete sequence Length = 183080 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cccacacacacatctctcaa 226 |||||||||||||||||||| Sbjct: 152433 cccacacacacatctctcaa 152414
>gb|AF414183.1| Homo sapiens deleted in azoospermia 1 (DAZ1) gene, exons 4 through 7b and partial cds Length = 2845 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 1746 cttcttctttttccttctct 1765
>gb|AC139035.12| Mus musculus chromosome 5, clone RP23-348E9, complete sequence Length = 237627 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 181697 ttcttctttttccttctctc 181716
>gb|AC032011.15| Homo sapiens chromosome 15, clone RP11-435J9, complete sequence Length = 201200 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 88061 ttcttctttttccttctctc 88042
>gb|AC092036.3| Homo sapiens chromosome 3 clone RP11-79C12, complete sequence Length = 137703 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 taaaattttgaattcctttc 21 |||||||||||||||||||| Sbjct: 31696 taaaattttgaattcctttc 31677
>gb|AC091394.2|AC091394 Homo sapiens chromosome 5 clone CTD-2231K23, complete sequence Length = 134928 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttcttctttttccttctctc 367 |||||||||||||||||||| Sbjct: 9283 ttcttctttttccttctctc 9302
>gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromosome y, complete sequence Length = 170833 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 169722 cttcttctttttccttctct 169741 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 131143 cttcttctttttccttctct 131124 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 120290 cttcttctttttccttctct 120271 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 109449 cttcttctttttccttctct 109430
>gb|AC139766.15| Homo sapiens 3 BAC RP11-688P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187748 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 taaaattttgaattcctttc 21 |||||||||||||||||||| Sbjct: 26742 taaaattttgaattcctttc 26761
>gb|AC010089.4|AC010089 Homo sapiens BAC clone RP11-290O3 from Y, complete sequence Length = 103356 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 67535 cttcttctttttccttctct 67516
>gb|AC053490.2|AC053490 Homo sapiens BAC clone RP11-140H23 from Y, complete sequence Length = 103432 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 93280 cttcttctttttccttctct 93299 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 53968 cttcttctttttccttctct 53949 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 43120 cttcttctttttccttctct 43101 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 32280 cttcttctttttccttctct 32261
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3043276 cttcttctttttccttctct 3043295 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3032428 cttcttctttttccttctct 3032447 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 2993112 cttcttctttttccttctct 2993093 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 1418041 cttcttctttttccttctct 1418060 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 1378729 cttcttctttttccttctct 1378710 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 1367881 cttcttctttttccttctct 1367862 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 1357041 cttcttctttttccttctct 1357022
>gb|AC138390.2| Homo sapiens chromosome 3 clone RP11-81N13, complete sequence Length = 158080 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 taaaattttgaattcctttc 21 |||||||||||||||||||| Sbjct: 102535 taaaattttgaattcctttc 102554
>emb|BX537113.8| Zebrafish DNA sequence from clone CH211-207G17 in linkage group 16, complete sequence Length = 218597 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tgcaatttctgaaagcataa 118 |||||||||||||||||||| Sbjct: 94423 tgcaatttctgaaagcataa 94404
>gb|AF164343.1|AF164343 Homo sapiens chromosome Y BAC clone 148I14 from Deleted in Azoospermia (DAZ) locus Length = 85674 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 32400 cttcttctttttccttctct 32419 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 21556 cttcttctttttccttctct 21575 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 10712 cttcttctttttccttctct 10731
>emb|AL352976.3|CNS05TBV Human chromosome 14 DNA sequence BAC R-487K10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180460 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 aaattttgaattcctttccagaag 27 |||||||| ||||||||||||||| Sbjct: 165856 aaattttgtattcctttccagaag 165833
>gb|AC000021.1|HSAC000021 Origins of the DAZ gene cluster on the human Y chromosome: an autosomal gene was transposed, then repeatedly amplified and pruned, complete sequence Length = 40328 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cttcttctttttccttctct 366 |||||||||||||||||||| Sbjct: 3907 cttcttctttttccttctct 3926
>gb|DQ004855.1| Listeria bacteriophage P100, complete genome Length = 131384 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 tcttctttttccttctctcg 368 |||||||||||||||||||| Sbjct: 4334 tcttctttttccttctctcg 4315
>emb|AL158800.6|CNS01RGM Human chromosome 14 DNA sequence BAC R-359N5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163979 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 aaattttgaattcctttccagaag 27 |||||||| ||||||||||||||| Sbjct: 2641 aaattttgtattcctttccagaag 2618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,424,696 Number of Sequences: 3902068 Number of extensions: 5424696 Number of successful extensions: 108233 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107627 Number of HSP's gapped (non-prelim): 606 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)