>UPPS_STRP8 (Q8NZB2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 249

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 402 THMVLASGGKNI*YCSDGKGGWSQSNIQRMIFGHLRKLKLMNYVVETWAEKAATV 238
           T  VL S  K+I    DG G W++  ++  +FGH   +  +  V  T +E    V
Sbjct: 9   TKKVLGSIPKHIGIIMDGNGRWAKKRLKPRVFGHKAGMDALQEVTITASELGVKV 63

>UPPS_STRP6 (Q5X9U4) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 249

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 402 THMVLASGGKNI*YCSDGKGGWSQSNIQRMIFGHLRKLKLMNYVVETWAEKAATV 238
           T  VL S  K+I    DG G W++  ++  +FGH   +  +  V  T +E    V
Sbjct: 9   TKKVLGSIPKHIGIIMDGNGRWAKKRLKPRVFGHKAGMDALQEVTITASELGVKV 63

>UPPS_STRP1 (Q99XY1) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 249

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 402 THMVLASGGKNI*YCSDGKGGWSQSNIQRMIFGHLRKLKLMNYVVETWAEKAATV 238
           T  VL S  K+I    DG G W++  ++  +FGH   +  +  V  T +E    V
Sbjct: 9   TKKVLGSIPKHIGIIMDGNGRWAKKRLKPRVFGHKAGMDALQEVTITASELGVKV 63

>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein|
           5.5) (Ultrahigh sulfur keratin-associated protein 5.5)
           (Keratin-associated protein 5-11) (Keratin-associated
           protein 5.11)
          Length = 221

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -1

Query: 132 CFSGLVLSFVYEFCCFP---DGLCCFFCSSGA*IGTNCYSSLAYQP 4
           C SG   S     CC P      CC  CS  +  G++C  S  Y+P
Sbjct: 159 CSSGCGSSCCQSSCCKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKP 204

>UPPS_FRATT (Q5NHX6) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 257

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 354 DGKGGWSQSNIQRMIFGHLRKLKLMNYVVETWAE 253
           DG G W++S ++  IFGH   +  ++  +E   E
Sbjct: 34  DGNGRWAKSRLKPRIFGHRNSVSSVDATIEYCVE 67

>SMI2_DEBHA (Q6BJY4) KNR4/SMI1 homolog 2|
          Length = 590

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 330 SNIQRMIFGHLRKLKLMNYVVETWAEKAATVDGARGKHDH 211
           SN+Q  +FG +  L+L N+ ++   +    +DG+R   D+
Sbjct: 311 SNLQEFMFGFVSDLELGNFQIDQNDQDGGFLDGSRNDDDY 350

>CCL28_CANFA (Q68A91) Small inducible cytokine A28 precursor (CCL28)|
          Length = 128

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 3   QADTQGLSNNLCQFKHPKNRKNSTSHQENNKIH 101
           QA  +    N+C  K    RK+  +HQE  +IH
Sbjct: 90  QAAKKNTKGNICHKKQAGKRKSKGAHQEKPEIH 122

>YIP2_YEAST (P40455) Hypothetical 27.2 kDa protein in IMP2-DNA43 intergenic|
           region
          Length = 235

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 53  EEQKKQHKPSGKQQNSYTNDKTKPLKQ-VQIVQW--KATQSTLK 175
           +E  KQ +   ++QN  + + T PL+Q VQ  QW   A+ S+LK
Sbjct: 78  QEHHKQQQQQQQRQNIRSQNSTPPLRQLVQESQWTSSASNSSLK 121

>UPPS_STRP3 (Q8K5S5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 249

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 402 THMVLASGGKNI*YCSDGKGGWSQSNIQRMIFGHLRKLKLMNYVVETWAEKAATV 238
           T  V     K+I    DG G W++  ++  +FGH   +  +  V  T +E    V
Sbjct: 9   TKKVFGGIPKHIGIIMDGNGRWAKKRLKPRVFGHKAGMDALQEVTITASELGVKV 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,148,925
Number of Sequences: 219361
Number of extensions: 986737
Number of successful extensions: 2609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2609
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)