ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33h06 |
|---|---|
| Clone Library Name | barley_pub |
>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 601 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +3 Query: 219 LQQTGYRRTTR----SVILSVSKQILLAEEVTVYDLRHGLQEQVLTRPRENGVLR 371 LQ++GY RT+ VIL V+ I E T+++ H L+ RPR LR Sbjct: 123 LQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLR 177
>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 586 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +3 Query: 219 LQQTGYRRTTR----SVILSVSKQILLAEEVTVYDLRHGLQEQVLTRPRENGVLR 371 LQ++GY RT+ VIL V+ I E T+++ H L+ RPR LR Sbjct: 120 LQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKVLKAKRPRSRVPLR 174
>ARGR1_STRP8 (Q7CMZ7) Arginine repressor 1| Length = 157 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +1 Query: 64 VIRTNAAQTSIFTEENVLERLQTNGI 141 +IR+ ++T+I T++ + ERLQ NGI Sbjct: 10 LIRSLISETTIHTQQELQERLQKNGI 35
>ARGR1_STRP6 (Q5XAY0) Arginine repressor 1| Length = 157 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +1 Query: 64 VIRTNAAQTSIFTEENVLERLQTNGI 141 +IR+ ++T+I T++ + ERLQ NGI Sbjct: 10 LIRSLISETTIHTQQELQERLQKNGI 35
>ARGR1_STRP3 (Q7CEX2) Arginine repressor 1| Length = 157 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +1 Query: 64 VIRTNAAQTSIFTEENVLERLQTNGI 141 +IR+ ++T+I T++ + ERLQ NGI Sbjct: 10 LIRSLISETTIHTQQELQERLQKNGI 35
>ARGR1_STRP1 (Q99YT5) Arginine repressor 1| Length = 157 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +1 Query: 64 VIRTNAAQTSIFTEENVLERLQTNGI 141 +IR+ ++T+I T++ + ERLQ NGI Sbjct: 10 LIRSLISETTIHTQQELQERLQKNGI 35
>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 588 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +3 Query: 219 LQQTGYRRTTR----SVILSVSKQILLAEEVTVYDLRHGLQEQVLTRPRENGVLR 371 LQ++GY RT+ VIL V+ I E T+++ H L+ RPR LR Sbjct: 122 LQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKVLKTKRPRSRVPLR 176
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 209 TRHCPRPAPHQGTNDFICF*PQTIPFVCSRSRTFSSVNIDVCAALVLI 66 T P A HQ N F C P + C T+ +V C A++LI Sbjct: 164 TMSLPFCASHQ-INHFFCEAPTMLRLACGDKTTYETVMYVCCVAMLLI 210
>DDLB_BRUSU (Q8FZP5) D-alanine--D-alanine ligase B (EC 6.3.2.4)| (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) Length = 308 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 186 SWSGAVPCETYLQQTGYRRTTRSVILSVSKQILLAEEVTVYDLRHG 323 S S V C T L++ GYR T V +V+ ++ + V++ HG Sbjct: 20 SLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 65
>DDLB_BRUME (Q8YI63) D-alanine--D-alanine ligase B (EC 6.3.2.4)| (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) Length = 315 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 186 SWSGAVPCETYLQQTGYRRTTRSVILSVSKQILLAEEVTVYDLRHG 323 S S V C T L++ GYR T V +V+ ++ + V++ HG Sbjct: 27 SLSSGVACATTLEECGYRVTRIDVDRNVASILVELKPDVVFNALHG 72
>COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = +3 Query: 228 TGYRRTTRSVILSVSKQILLAEEVTVYDLRHGLQEQV 338 T +TT + + ++Q+L+A + YD+RH E + Sbjct: 1067 TQLSKTTNAKVALRARQVLIASHLPSYDVRHNQVESI 1103
>IF2_EHRRW (Q5HB61) Translation initiation factor IF-2| Length = 856 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/34 (32%), Positives = 23/34 (67%) Frame = +3 Query: 237 RRTTRSVILSVSKQILLAEEVTVYDLRHGLQEQV 338 R T RSV +++++L+ ++TV +L + + E+V Sbjct: 262 RVTNRSVKNKITRKVLIPNKITVQELANSMSERV 295
>IF2_EHRRG (Q5FGX3) Translation initiation factor IF-2| Length = 856 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/34 (32%), Positives = 23/34 (67%) Frame = +3 Query: 237 RRTTRSVILSVSKQILLAEEVTVYDLRHGLQEQV 338 R T RSV +++++L+ ++TV +L + + E+V Sbjct: 262 RVTNRSVKNKITRKVLIPNKITVQELANSMSERV 295
>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 762 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 326 PGTGSHSSPGERRPPLPG*CPRS 394 PG+GSH SP + P P PRS Sbjct: 657 PGSGSHRSPARQGLPSPPGTPRS 679
>COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2345 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = +3 Query: 228 TGYRRTTRSVILSVSKQILLAEEVTVYDLRHGLQEQV 338 T +TT + + ++Q+L+A + YD+RH E + Sbjct: 1066 TQLSKTTNAKVALRARQVLIASHLPSYDVRHNQVESI 1102
>METC_BORAV (Q07703) Cystathionine beta-lyase (EC 4.4.1.8) (CBL)| (Beta-cystathionase) (Cysteine lyase) (Osteotoxin) Length = 395 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%) Frame = +3 Query: 102 RRKCS*AATNKRNRLGLETNEIISPLMRSWSGAVPCETYLQQTGYRRTTRSV--ILSVSK 275 RRK + + R+G++T+ + + G C YL +G + +LS + Sbjct: 52 RRKAAGERASTYGRMGMDTHAALEQVFAELEGGTHC--YLASSGLAGISMVFLSLLSAGE 109 Query: 276 QILLAEEVTVYDLRHGLQEQVLTR 347 L+A+ Y H L E VL+R Sbjct: 110 HALVAD--CAYGPVHELHEAVLSR 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,627,354 Number of Sequences: 219361 Number of extensions: 931632 Number of successful extensions: 2199 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2199 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
