ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete... 44 0.40
2ref|NM_166371.1| Drosophila melanogaster CG16716-RA, transcript ... 44 0.40
3ref|NM_137589.2| Drosophila melanogaster CG16716-RB, transcript ... 44 0.40
4gb|AY089393.1| Drosophila melanogaster AT21729 full insert cDNA 44 0.40
5gb|AC099014.1| Drosophila melanogaster, chromosome 2R, region 56... 44 0.40
6emb|BX005435.16| Zebrafish DNA sequence from clone CH211-154E15 ... 44 0.40
7gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55... 44 0.40
8emb|CR352220.19| Zebrafish DNA sequence from clone DKEY-148F10 i... 44 0.40
9gb|AC005148.1|AC005148 Drosophila melanogaster DNA sequence (P1s... 44 0.40
10gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, co... 42 1.6
11emb|AL627302.20| Mouse DNA sequence from clone RP23-272D10 on ch... 42 1.6
12gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.3
13gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete... 40 6.3
14gb|AC153489.7| Mus musculus 10 BAC RP23-95A4 (Roswell Park Cance... 40 6.3
15gb|AC010983.9| Homo sapiens BAC clone RP11-484E10 from 2, comple... 40 6.3
16gb|AC016706.6| Homo sapiens BAC clone RP11-215D12 from 2, comple... 40 6.3
17gb|AC153492.5| Mus musculus 10 BAC RP23-292N5 (Roswell Park Canc... 40 6.3
18gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, r... 40 6.3
19gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10... 40 6.3

>gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete sequence
          Length = 158491

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 72     cagatcaaacttgtagccatct 93
              ||||||||||||||||||||||
Sbjct: 125131 cagatcaaacttgtagccatct 125152



to top

>ref|NM_166371.1| Drosophila melanogaster CG16716-RA, transcript variant A (CG16716),
           mRNA
          Length = 2580

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 72  cagatcaaacttgtagccatct 93
           ||||||||||||||||||||||
Sbjct: 936 cagatcaaacttgtagccatct 915



to top

>ref|NM_137589.2| Drosophila melanogaster CG16716-RB, transcript variant B (CG16716),
           mRNA
          Length = 2680

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 72  cagatcaaacttgtagccatct 93
           ||||||||||||||||||||||
Sbjct: 936 cagatcaaacttgtagccatct 915



to top

>gb|AY089393.1| Drosophila melanogaster AT21729 full insert cDNA
          Length = 2383

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 72  cagatcaaacttgtagccatct 93
           ||||||||||||||||||||||
Sbjct: 966 cagatcaaacttgtagccatct 945



to top

>gb|AC099014.1| Drosophila melanogaster, chromosome 2R, region 56D-56D, BAC clone
             BACR26L01, complete sequence
          Length = 160106

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 72    cagatcaaacttgtagccatct 93
             ||||||||||||||||||||||
Sbjct: 58072 cagatcaaacttgtagccatct 58093



to top

>emb|BX005435.16| Zebrafish DNA sequence from clone CH211-154E15 in linkage group 17,
             complete sequence
          Length = 166247

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 191   aatagcaatcaaatgcaacaag 212
             ||||||||||||||||||||||
Sbjct: 49988 aatagcaatcaaatgcaacaag 50009



to top

>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete
              sequence
          Length = 248096

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 72     cagatcaaacttgtagccatct 93
              ||||||||||||||||||||||
Sbjct: 139097 cagatcaaacttgtagccatct 139076



to top

>emb|CR352220.19| Zebrafish DNA sequence from clone DKEY-148F10 in linkage group 17,
              complete sequence
          Length = 174580

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 191    aatagcaatcaaatgcaacaag 212
              ||||||||||||||||||||||
Sbjct: 148115 aatagcaatcaaatgcaacaag 148094



to top

>gb|AC005148.1|AC005148 Drosophila melanogaster DNA sequence (P1s DS05759 (D204) and DS09033
             (D211)), complete sequence
          Length = 95262

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 72    cagatcaaacttgtagccatct 93
             ||||||||||||||||||||||
Sbjct: 81864 cagatcaaacttgtagccatct 81843



to top

>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence
          Length = 128950

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   aaaaccaaataatacttgtat 253
             |||||||||||||||||||||
Sbjct: 55493 aaaaccaaataatacttgtat 55513



to top

>emb|AL627302.20| Mouse DNA sequence from clone RP23-272D10 on chromosome X, complete
             sequence
          Length = 191439

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   tgaaaaccaaataatacttgt 251
             |||||||||||||||||||||
Sbjct: 73776 tgaaaaccaaataatacttgt 73756



to top

>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 241     ataatacttgtattgtagca 260
               ||||||||||||||||||||
Sbjct: 1719335 ataatacttgtattgtagca 1719354



to top

>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence
          Length = 164920

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    acaagattccctgaaaacca 239
              ||||||||||||||||||||
Sbjct: 122953 acaagattccctgaaaacca 122972



to top

>gb|AC153489.7| Mus musculus 10 BAC RP23-95A4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209653

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    tctgggatgattgggatggc 433
              ||||||||||||||||||||
Sbjct: 160722 tctgggatgattgggatggc 160703



to top

>gb|AC010983.9| Homo sapiens BAC clone RP11-484E10 from 2, complete sequence
          Length = 189870

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   gaaaaccaaataatacttgt 251
             ||||||||||||||||||||
Sbjct: 95699 gaaaaccaaataatacttgt 95718



to top

>gb|AC016706.6| Homo sapiens BAC clone RP11-215D12 from 2, complete sequence
          Length = 184121

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   ttccctgaaaaccaaataat 245
             ||||||||||||||||||||
Sbjct: 98452 ttccctgaaaaccaaataat 98433



to top

>gb|AC153492.5| Mus musculus 10 BAC RP23-292N5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195237

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    tctgggatgattgggatggc 433
              ||||||||||||||||||||
Sbjct: 170474 tctgggatgattgggatggc 170493



to top

>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones
              DS02190 and DS00906, complete sequence
          Length = 163403

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    acaagattccctgaaaacca 239
              ||||||||||||||||||||
Sbjct: 101136 acaagattccctgaaaacca 101155



to top

>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete
             sequence
          Length = 314957

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   acaagattccctgaaaacca 239
             ||||||||||||||||||||
Sbjct: 99563 acaagattccctgaaaacca 99544


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,873,388
Number of Sequences: 3902068
Number of extensions: 3873388
Number of successful extensions: 74307
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74276
Number of HSP's gapped (non-prelim): 31
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top