>gb|AC107397.5| Homo sapiens BAC clone RP11-703C14 from 4, complete sequence
          Length = 96372

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 146   attgtttctttagcagtataagaag 170
             ||||||||||||||||||| |||||
Sbjct: 48695 attgtttctttagcagtattagaag 48719

>gb|AC084458.1|AC084458 Caenorhabditis briggsae cosmid CB032H19, complete sequence
          Length = 65241

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 60    ctacaaaaatgtagcttacaacatt 84
             |||||||||||||||||| ||||||
Sbjct: 23712 ctacaaaaatgtagcttataacatt 23688

>gb|AC093769.3| Homo sapiens BAC clone RP11-114I18 from 2, complete sequence
          Length = 58221

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 144   atattgtttctttagcagtat 164
             |||||||||||||||||||||
Sbjct: 26942 atattgtttctttagcagtat 26922

>emb|BX908747.25| Zebrafish DNA sequence from clone DKEY-58J15 in linkage group 1,
            complete sequence
          Length = 232503

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   ttgtgttttatgctacaaaaa 68
            |||||||||||||||||||||
Sbjct: 5317 ttgtgttttatgctacaaaaa 5297

>gb|BC085352.1| Rattus norvegicus cathepsin H, mRNA (cDNA clone MGC:105498
           IMAGE:7115929), complete cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cagaggtatttgtgttttat 58
           ||||||||||||||||||||
Sbjct: 299 cagaggtatttgtgttttat 280

>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224115

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    gattcacagtgatttttcct 297
              ||||||||||||||||||||
Sbjct: 219066 gattcacagtgatttttcct 219047

>gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome 6, complete sequence
          Length = 199923

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   gattcacagtgatttttcct 297
             ||||||||||||||||||||
Sbjct: 63560 gattcacagtgatttttcct 63541

>emb|AL031779.5|HS445N2 Human DNA sequence from clone RP3-445N2 on chromosome 6p12.1-21.1
             Contains the 5' end of the COL21A1 gene for collagen, type
             XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1,
             COLA1L, COL20A1, DKFZp564B052) and part of a novel gene,
             complete sequence
          Length = 101010

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   acaaacttaacaggaaaact 227
             ||||||||||||||||||||
Sbjct: 37402 acaaacttaacaggaaaact 37383

>emb|Y00708.1|RNCATHH Rat mRNA for cathepsin H
          Length = 1362

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cagaggtatttgtgttttat 58
           ||||||||||||||||||||
Sbjct: 284 cagaggtatttgtgttttat 265

>emb|BX569792.15| Zebrafish DNA sequence from clone CH211-197I17 in linkage group 16,
            complete sequence
          Length = 234579

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   ttttatgctacaaaaatgta 72
            ||||||||||||||||||||
Sbjct: 9168 ttttatgctacaaaaatgta 9187

>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene,
             complete cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   acaaacttaacaggaaaact 227
             ||||||||||||||||||||
Sbjct: 13654 acaaacttaacaggaaaact 13635

>emb|BX088600.12| Zebrafish DNA sequence from clone DKEY-166M7 in linkage group 16,
             complete sequence
          Length = 192992

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ttttatgctacaaaaatgta 72
             ||||||||||||||||||||
Sbjct: 44620 ttttatgctacaaaaatgta 44639

>gb|U23376.1|LLU23376 Lactococcus lactis N5-(1-carboxyethyl)-L-ornithine synthase (ceo)
           gene, complete cds
          Length = 3421

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 caaacttaacaggaaaactt 228
           ||||||||||||||||||||
Sbjct: 555 caaacttaacaggaaaactt 574

>ref|NM_012939.1| Rattus norvegicus cathepsin H (Ctsh), mRNA
          Length = 1362

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cagaggtatttgtgttttat 58
           ||||||||||||||||||||
Sbjct: 284 cagaggtatttgtgttttat 265

>gb|M38135.1|RATCATH Rat cathepsin H (RCHII) mRNA,
          Length = 1360

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cagaggtatttgtgttttat 58
           ||||||||||||||||||||
Sbjct: 278 cagaggtatttgtgttttat 259


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,330,398
Number of Sequences: 3902068
Number of extensions: 3330398
Number of successful extensions: 63300
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63264
Number of HSP's gapped (non-prelim): 36
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)