ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33g11 |
|---|---|
| Clone Library Name | barley_pub |
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 44.3 bits (103), Expect = 8e-05 Identities = 22/32 (68%), Positives = 23/32 (71%), Gaps = 3/32 (9%) Frame = -3 Query: 292 SPSASYSPTAPGYSPSSTG---PQATDKDDET 206 SPSA YSPT PGYSPSSTG P DK D+T Sbjct: 1796 SPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKT 1827 Score = 31.6 bits (70), Expect = 0.54 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = -3 Query: 292 SPSA-SYSPTAPGYSPSSTGPQAT 224 SPS+ YSPT+PGYSP+S G T Sbjct: 1546 SPSSPGYSPTSPGYSPTSPGYSPT 1569 Score = 31.2 bits (69), Expect = 0.70 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTGPQAT 224 S YSPT+PGYSP+S G T Sbjct: 1556 SPGYSPTSPGYSPTSPGYSPT 1576 Score = 31.2 bits (69), Expect = 0.70 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 2/25 (8%) Frame = -3 Query: 292 SPSAS--YSPTAPGYSPSSTGPQAT 224 SPS+S YSP++PGYSP+S G T Sbjct: 1538 SPSSSPGYSPSSPGYSPTSPGYSPT 1562 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTGPQAT 224 S SYSPT+P YSP+S G T Sbjct: 1689 SPSYSPTSPAYSPTSPGYSPT 1709 Score = 30.0 bits (66), Expect = 1.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -3 Query: 292 SPSASYSPTAPGYSPSS 242 SP++ YSPT+P YSP+S Sbjct: 1748 SPASPYSPTSPNYSPTS 1764 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 1764 SPSYSPTSPSYSPSS 1778 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/15 (73%), Positives = 14/15 (93%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S +YSPT+PGYSP+S Sbjct: 1696 SPAYSPTSPGYSPTS 1710 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTGPQAT 224 S YSPT+P YSPSS G T Sbjct: 1570 SPGYSPTSPTYSPSSPGYSPT 1590 Score = 28.9 bits (63), Expect = 3.5 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S YSPT+PGYSP+S Sbjct: 1563 SPGYSPTSPGYSPTS 1577 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1682 SPSYSPTSPSYSPTS 1696 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1675 SPSYSPTSPSYSPTS 1689 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1668 SPSYSPTSPSYSPTS 1682 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1661 SPSYSPTSPSYSPTS 1675 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1633 SPSYSPTSPAYSPTS 1647 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1626 SPSYSPTSPSYSPTS 1640 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1619 SPSYSPTSPSYSPTS 1633 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1612 SPSYSPTSPSYSPTS 1626 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1605 SPSYSPTSPSYSPTS 1619 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1598 SPSYSPTSPSYSPTS 1612 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S +YSP++PGYSP+S Sbjct: 1577 SPTYSPSSPGYSPTS 1591
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 32.7 bits (73), Expect = 0.24 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTGPQATDKDDE 209 S SYSPT+PGYSP S P + K DE Sbjct: 1700 SPSYSPTSPGYSPGS--PAYSPKQDE 1723 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1686 SPSYSPTSPNYSPTS 1700 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1679 SPSYSPTSPSYSPTS 1693 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1672 SPSYSPTSPSYSPTS 1686 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1665 SPSYSPTSPSYSPTS 1679 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1651 SPSYSPTSPAYSPTS 1665 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1644 SPSYSPTSPSYSPTS 1658 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1637 SPSYSPTSPSYSPTS 1651 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1630 SPSYSPTSPSYSPTS 1644 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1623 SPSYSPTSPSYSPTS 1637 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1616 SPSYSPTSPSYSPTS 1630 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1609 SPSYSPTSPSYSPTS 1623 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1602 SPSYSPTSPSYSPTS 1616 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1595 SPSYSPTSPSYSPTS 1609 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1588 SPSYSPTSPSYSPTS 1602 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1581 SPSYSPTSPSYSPTS 1595 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1574 SPSYSPTSPSYSPTS 1588 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1567 SPSYSPTSPSYSPTS 1581 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1560 SPSYSPTSPSYSPTS 1574
>CUT1_SCHPO (P18296) Separin (EC 3.4.22.49) (Separase) (Cell untimely torn| protein 1) Length = 1828 Score = 31.2 bits (69), Expect = 0.70 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -3 Query: 226 TDKDDETVD*KMAADRWLMQNHATLPTLVSLCV---QNRPCCKLRY 98 TDKD + KM L +N A S+C ++R CC LRY Sbjct: 1766 TDKDIDRFSLKMLESWGLFENKAPFVNSTSICTAVSESRSCCHLRY 1811
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTGPQAT 224 S SYSPT+P YSP+S AT Sbjct: 1589 SPSYSPTSPSYSPTSPSYSAT 1609 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1736 SPSYSPTSPSYSPTS 1750 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1729 SPSYSPTSPSYSPTS 1743 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1722 SPSYSPTSPSYSPTS 1736 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1715 SPSYSPTSPSYSPTS 1729 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1708 SPSYSPTSPSYSPTS 1722 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1701 SPSYSPTSPSYSPTS 1715 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1694 SPSYSPTSPSYSPTS 1708 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1687 SPSYSPTSPSYSPTS 1701 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1680 SPSYSPTSPSYSPTS 1694 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1673 SPSYSPTSPSYSPTS 1687 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1666 SPSYSPTSPSYSPTS 1680 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1659 SPSYSPTSPSYSPTS 1673 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1652 SPSYSPTSPSYSPTS 1666 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1645 SPSYSPTSPSYSPTS 1659 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1638 SPSYSPTSPSYSPTS 1652 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1631 SPSYSPTSPSYSPTS 1645 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1624 SPSYSPTSPSYSPTS 1638 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1617 SPSYSPTSPSYSPTS 1631 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1610 SPSYSPTSPSYSPTS 1624 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1582 SPSYSPTSPSYSPTS 1596 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1575 SPSYSPTSPSYSPTS 1589
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 1644 SPSYSPTSPSYSPSS 1658 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 SA YSPT+P YSPSS Sbjct: 1817 SAQYSPTSPTYSPSS 1831 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%) Frame = -3 Query: 292 SPSA-SYSPTAPGYSPSS 242 SPS+ SYSP++P YSPSS Sbjct: 1655 SPSSPSYSPSSPSYSPSS 1672 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1637 SPSYSPTSPSYSPTS 1651 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1630 SPSYSPTSPSYSPTS 1644 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1623 SPSYSPTSPSYSPTS 1637 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1616 SPSYSPTSPSYSPTS 1630 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1609 SPSYSPTSPSYSPTS 1623 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 6/27 (22%) Frame = -3 Query: 292 SPSA-SYSPTAPGYSPSS-----TGPQ 230 SPS+ +YSPT+P YSP+S T PQ Sbjct: 1724 SPSSPTYSPTSPSYSPTSPQYSPTSPQ 1750 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSP++P YSPSS Sbjct: 1651 SPSYSPSSPSYSPSS 1665
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Frame = -3 Query: 292 SPSAS-YSPTAPGYSPSS-----TGPQATDKDDE 209 SP S YSPT+PGYSP+S T P + D + Sbjct: 1934 SPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSD 1967 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 1794 SPSYSPTSPSYSPSS 1808 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1787 SPSYSPTSPSYSPTS 1801 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1759 SPSYSPTSPSYSPTS 1773 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1738 SPSYSPTSPNYSPTS 1752 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1731 SPSYSPTSPSYSPTS 1745 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1724 SPSYSPTSPSYSPTS 1738 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1717 SPSYSPTSPSYSPTS 1731 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1710 SPSYSPTSPSYSPTS 1724 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1703 SPSYSPTSPSYSPTS 1717 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1696 SPSYSPTSPSYSPTS 1710 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1689 SPSYSPTSPSYSPTS 1703 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1682 SPSYSPTSPSYSPTS 1696 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1675 SPSYSPTSPSYSPTS 1689 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1668 SPSYSPTSPSYSPTS 1682 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1661 SPSYSPTSPSYSPTS 1675 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1654 SPSYSPTSPSYSPTS 1668 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1647 SPSYSPTSPSYSPTS 1661 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1640 SPSYSPTSPSYSPTS 1654 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1626 SPSYSPTSPNYSPTS 1640 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1619 SPSYSPTSPSYSPTS 1633 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1612 SPSYSPTSPSYSPTS 1626 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTG 236 S SYSPT+P Y P S G Sbjct: 1590 SPSYSPTSPAYEPRSPG 1606
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Frame = -3 Query: 292 SPSAS-YSPTAPGYSPSS-----TGPQATDKDDE 209 SP S YSPT+PGYSP+S T P + D + Sbjct: 1934 SPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSD 1967 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 1794 SPSYSPTSPSYSPSS 1808 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1787 SPSYSPTSPSYSPTS 1801 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1759 SPSYSPTSPSYSPTS 1773 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1738 SPSYSPTSPNYSPTS 1752 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1731 SPSYSPTSPSYSPTS 1745 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1724 SPSYSPTSPSYSPTS 1738 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1717 SPSYSPTSPSYSPTS 1731 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1710 SPSYSPTSPSYSPTS 1724 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1703 SPSYSPTSPSYSPTS 1717 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1696 SPSYSPTSPSYSPTS 1710 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1689 SPSYSPTSPSYSPTS 1703 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1682 SPSYSPTSPSYSPTS 1696 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1675 SPSYSPTSPSYSPTS 1689 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1668 SPSYSPTSPSYSPTS 1682 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1661 SPSYSPTSPSYSPTS 1675 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1654 SPSYSPTSPSYSPTS 1668 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1647 SPSYSPTSPSYSPTS 1661 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1640 SPSYSPTSPSYSPTS 1654 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1626 SPSYSPTSPNYSPTS 1640 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1619 SPSYSPTSPSYSPTS 1633 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1612 SPSYSPTSPSYSPTS 1626 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTG 236 S SYSPT+P Y P S G Sbjct: 1590 SPSYSPTSPAYEPRSPG 1606
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 1682 SPSYSPTSPSYSPSS 1696 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 292 SPSASYSPTAPGYSPSSTG 236 S S SYSPT+P Y+ SS G Sbjct: 1574 SVSPSYSPTSPNYTASSPG 1592 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTGP 233 S S+SP PG SPSS GP Sbjct: 1546 SPSWSPAHPGSSPSSPGP 1563
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (Fragment) Length = 902 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 851 SPSYSPTSPSYSPSS 865 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%) Frame = -3 Query: 292 SPSA-SYSPTAPGYSPSSTGPQATDK 218 SPS+ SYSP++P YSPSS P T+K Sbjct: 869 SPSSPSYSPSSPSYSPSS--PTFTNK 892 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%) Frame = -3 Query: 292 SPSA-SYSPTAPGYSPSS 242 SPS+ SYSP++P YSPSS Sbjct: 862 SPSSPSYSPSSPSYSPSS 879 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 844 SPSYSPTSPSYSPTS 858 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 837 SPSYSPTSPSYSPTS 851 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 830 SPSYSPTSPSYSPTS 844 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 823 SPSYSPTSPSYSPTS 837 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 816 SPSYSPTSPSYSPTS 830 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 809 SPSYSPTSPSYSPTS 823 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 802 SPSYSPTSPSYSPTS 816 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 795 SPSYSPTSPSYSPTS 809 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 788 SPSYSPTSPSYSPTS 802 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 781 SPSYSPTSPSYSPTS 795 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 760 SPSYSPTSPSYSPTS 774 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 753 SPSYSPTSPSYSPTS 767 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 746 SPSYSPTSPSYSPTS 760 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 739 SPSYSPTSPSYSPTS 753 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 732 SPSYSPTSPSYSPTS 746 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSP++P YSPSS Sbjct: 858 SPSYSPSSPSYSPSS 872
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 1662 SPSYSPTSPSYSPSS 1676 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1655 SPSYSPTSPSYSPTS 1669 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1648 SPSYSPTSPSYSPTS 1662 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1641 SPSYSPTSPSYSPTS 1655 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1634 SPSYSPTSPSYSPTS 1648 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1627 SPSYSPTSPSYSPTS 1641 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1620 SPSYSPTSPSYSPTS 1634 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1613 SPSYSPTSPSYSPTS 1627 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 6/27 (22%) Frame = -3 Query: 292 SPSA-SYSPTAPGYSPSS-----TGPQ 230 SPS+ +YSPT+P YSP+S T PQ Sbjct: 1725 SPSSPTYSPTSPSYSPTSPQYSPTSPQ 1751
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Frame = -3 Query: 292 SPSAS-YSPTAPGYSPSS-----TGPQATDKDDE 209 SP S YSPT+PGYSP+S T P + D + Sbjct: 431 SPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSD 464 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSPSS Sbjct: 291 SPSYSPTSPSYSPSS 305 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 284 SPSYSPTSPSYSPTS 298 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 256 SPSYSPTSPSYSPTS 270 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 235 SPSYSPTSPNYSPTS 249 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 228 SPSYSPTSPSYSPTS 242 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 221 SPSYSPTSPSYSPTS 235 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 214 SPSYSPTSPSYSPTS 228 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 207 SPSYSPTSPSYSPTS 221 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 200 SPSYSPTSPSYSPTS 214 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 193 SPSYSPTSPSYSPTS 207 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 186 SPSYSPTSPSYSPTS 200 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 179 SPSYSPTSPSYSPTS 193 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 172 SPSYSPTSPSYSPTS 186 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 165 SPSYSPTSPSYSPTS 179 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 158 SPSYSPTSPSYSPTS 172 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 151 SPSYSPTSPSYSPTS 165 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 144 SPSYSPTSPSYSPTS 158 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 137 SPSYSPTSPSYSPTS 151 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 123 SPSYSPTSPNYSPTS 137 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 116 SPSYSPTSPSYSPTS 130 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 109 SPSYSPTSPSYSPTS 123 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -3 Query: 286 SASYSPTAPGYSPSSTG 236 S SYSPT+P Y P S G Sbjct: 87 SPSYSPTSPAYEPRSPG 103
>INVA_PHAVU (O24509) Acid beta-fructofuranosidase precursor (EC 3.2.1.26) (Acid| sucrose hydrolase) (Acid invertase) (AI) (Vacuolar invertase) Length = 651 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +1 Query: 127 GHTRKQELVMWHGSASASGQQPFSNQQSRRPCQLPADRWTKGSSPVQSGSS 279 G R + H S+SAS Q Q+ + P LP+ +W S V SG S Sbjct: 41 GRNRASNVPHDHVSSSASNHQ----QEHQSPTSLPSSKWHAVSRGVSSGVS 87
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1745 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -3 Query: 286 SASYSPTAPGYSPSST--GPQATDKDDETVD 200 S SYSPT+P YSP S P + D E D Sbjct: 1710 SPSYSPTSPQYSPRSPSYSPSFNNNDKEQKD 1740 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 5/24 (20%) Frame = -3 Query: 286 SASYSPTAPGYSPSS-----TGPQ 230 S SYSPT+P YSP+S T PQ Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPQ 1719 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1689 SPSYSPTSPSYSPTS 1703 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1682 SPSYSPTSPSYSPTS 1696 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1675 SPSYSPTSPSYSPTS 1689 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1668 SPSYSPTSPSYSPTS 1682 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1661 SPSYSPTSPSYSPTS 1675 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1654 SPSYSPTSPSYSPTS 1668 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1647 SPSYSPTSPSYSPTS 1661 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1640 SPSYSPTSPSYSPTS 1654 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1633 SPSYSPTSPSYSPTS 1647 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1626 SPSYSPTSPSYSPTS 1640 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1619 SPSYSPTSPSYSPTS 1633 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1612 SPSYSPTSPSYSPTS 1626 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1605 SPSYSPTSPSYSPTS 1619 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1598 SPSYSPTSPSYSPTS 1612 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1591 SPSYSPTSPSYSPTS 1605 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1584 SPSYSPTSPSYSPTS 1598 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1577 SPSYSPTSPSYSPTS 1591 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1570 SPSYSPTSPSYSPTS 1584 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1563 SPSYSPTSPSYSPTS 1577 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1556 SPSYSPTSPSYSPTS 1570
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +1 Query: 133 TRKQELVMWHGSASASGQQPFSNQQSRRPCQLPADRW 243 +RKQE+ W G + FS +Q P ++P W Sbjct: 161 SRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGW 197
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1599 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1554 SPSYSPTSPSYSPTS 1568 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1547 SPSYSPTSPSYSPTS 1561 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1540 SPSYSPTSPSYSPTS 1554 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1533 SPSYSPTSPSYSPTS 1547 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1526 SPSYSPTSPSYSPTS 1540 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1519 SPSYSPTSPSYSPTS 1533 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1512 SPSYSPTSPSYSPTS 1526 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1505 SPSYSPTSPSYSPTS 1519 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1498 SPSYSPTSPSYSPTS 1512 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1491 SPSYSPTSPSYSPTS 1505 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1484 SPSYSPTSPSYSPTS 1498 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1477 SPSYSPTSPSYSPTS 1491 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 286 SASYSPTAPGYSPSS 242 S SYSPT+P YSP+S Sbjct: 1470 SPSYSPTSPSYSPTS 1484
>LRC25_BOVIN (Q8MII8) Leucine-rich repeat-containing protein 25 precursor| (Monocyte and plasmacytoid-activated protein) Length = 307 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +1 Query: 163 GSASASGQQPFSNQQSRRPCQLPADRWTKGSSP 261 GS S SG+QP + Q RRP + PA+ + S+P Sbjct: 211 GSRSGSGRQPRYSSQGRRP-KSPANTPPRSSTP 242
>GON4L_MOUSE (Q9DB00) GON-4-like protein (GON-4 homolog)| Length = 2260 Score = 27.7 bits (60), Expect = 7.8 Identities = 17/58 (29%), Positives = 22/58 (37%) Frame = +1 Query: 121 CSGHTRKQELVMWHGSASASGQQPFSNQQSRRPCQLPADRWTKGSSPVQSGSSLRWGC 294 C+ K+E WH SA Q+ FS A W + Q GSS + C Sbjct: 1264 CTTVFSKEEPKSWHSSADTGSQEAFSESS--------ACSWAVVKTESQEGSSEKSAC 1313
>TGBR3_RAT (P26342) TGF-beta receptor type III precursor (TGFR-3)| (Transforming growth factor beta receptor III) (Betaglycan) Length = 853 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +2 Query: 179 AVSSHFLINSLVVLVS-CLRTGGRRGVARC 265 AV+SH +I +VVL+S CL T G RC Sbjct: 2 AVTSHHMIPVMVVLMSACLATAGPEPSTRC 31
>CRIM1_CHICK (Q8AWW5) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| Length = 1048 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 188 C*PLADAEPCHITNSCFLVCPE 123 C PL AEP ++ SC +CPE Sbjct: 866 CPPLPCAEPINVEGSCCPMCPE 887 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,397,243 Number of Sequences: 219361 Number of extensions: 677310 Number of successful extensions: 2394 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1942 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2387 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
