ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33g10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 94.4 bits (233), Expect = 7e-20 Identities = 45/57 (78%), Positives = 45/57 (78%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDH PNSISI Sbjct: 806 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 77.8 bits (190), Expect = 6e-15 Identities = 39/57 (68%), Positives = 40/57 (70%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 RLVEIE KVVGMN D LKNRNGPA+FPYMLLYPNTSD PNSISI Sbjct: 810 RLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 69.7 bits (169), Expect = 2e-12 Identities = 34/57 (59%), Positives = 39/57 (68%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +LVEIESKV+ MN DP LKNR GPA FPY L++PNTSD+ PNSISI Sbjct: 807 QLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 67.8 bits (164), Expect = 7e-12 Identities = 34/57 (59%), Positives = 35/57 (61%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 RL EIES+VV MN DP KNR GP FPY LLYPNTSD PNSISI Sbjct: 814 RLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 60.8 bits (146), Expect = 8e-10 Identities = 32/58 (55%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSD-HXXXXXXXXXXXTPNSISI 151 RLV+IE+++ MN + LKNRNGP K PYMLLYPNTSD PNSISI Sbjct: 820 RLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 50.4 bits (119), Expect = 1e-06 Identities = 26/57 (45%), Positives = 31/57 (54%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L EIE K++G N D L+NRNGP K PY +L P D PNSISI Sbjct: 811 KLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPNSISI 862
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 49.3 bits (116), Expect = 2e-06 Identities = 21/38 (55%), Positives = 28/38 (73%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSD 208 +L EIE K+V N+D L+NR GPAK PY LLYP++ + Sbjct: 697 KLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEE 734
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 48.9 bits (115), Expect = 3e-06 Identities = 26/57 (45%), Positives = 33/57 (57%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L EIE K++ N D L+NR GPAK PY LLYP++ + PNSISI Sbjct: 803 KLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEE------GLTFRGIPNSISI 853
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/57 (42%), Positives = 34/57 (59%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L EIE K+ N+D +L+NR+GP + PY LLYP++ + PNSISI Sbjct: 811 KLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPNSISI 861
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/57 (43%), Positives = 32/57 (56%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L EIE K+ N+D L+NR GP K PY LLYP++ + PNSISI Sbjct: 816 KLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEE------GLTCRGIPNSISI 866
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 45.1 bits (105), Expect = 5e-05 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELK-NRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L EIE K+V N+DP L+ NR GP + PY LLYP++ + PNSISI Sbjct: 788 KLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEE------GLTFRGIPNSISI 839
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 45.1 bits (105), Expect = 5e-05 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L EIE+K+ N+DP L +R GP + PY LL+P++ + PNSISI Sbjct: 814 KLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPNSISI 864
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 43.1 bits (100), Expect = 2e-04 Identities = 24/57 (42%), Positives = 30/57 (52%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L EIE K+ N+D L NR GP + PY LL+PN+ PNSISI Sbjct: 816 KLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSE-------GLTCRGIPNSISI 865
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 42.4 bits (98), Expect = 3e-04 Identities = 23/57 (40%), Positives = 27/57 (47%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L IE K+ N DP L+NR GP + PY LL H PNSISI Sbjct: 814 KLTGIEGKINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/57 (38%), Positives = 33/57 (57%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L +IE+K+ N+D +L+NR GP + PY LL P++ + PNSISI Sbjct: 807 KLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 39.3 bits (90), Expect = 0.002 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = -3 Query: 318 LVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 L +IE++++ MN KNR+GP PY LL+P + + PNS+SI Sbjct: 810 LSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEE------GLTGKGIPNSVSI 859
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L +IE +++ N D L NR+GP PY LL+P + PNS+SI Sbjct: 811 KLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 861
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 37.7 bits (86), Expect = 0.007 Identities = 21/57 (36%), Positives = 28/57 (49%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 ++ EIE + N D LKNR G K PY LL+P++ PNS+SI Sbjct: 809 KVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSE------GGVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 35.4 bits (80), Expect = 0.036 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 +L +IE +++ N + L NR GP PY LL+P + PNS+SI Sbjct: 810 KLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSE------GGLTGKGIPNSVSI 860
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 34.7 bits (78), Expect = 0.061 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = -3 Query: 312 EIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHX----XXXXXXXXXXTPNSISI 151 +I +V N+DP+ KNR+G PY+LL P+ D PNSISI Sbjct: 879 KIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 34.7 bits (78), Expect = 0.061 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYP 220 RL EIE + G N D +LKNR G PY L+ P Sbjct: 874 RLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP 907
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 34.7 bits (78), Expect = 0.061 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYP 220 RL EIE + G N D +LKNR G PY L+ P Sbjct: 891 RLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKP 924
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 33.9 bits (76), Expect = 0.10 Identities = 23/58 (39%), Positives = 27/58 (46%) Frame = -3 Query: 324 GRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 GRL E E + N++PE KNR G PY LL P + PNSISI Sbjct: 845 GRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>TTDN1_HUMAN (Q8TAP9) TTD nonphotosensitive 1 protein| Length = 179 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/55 (30%), Positives = 21/55 (38%) Frame = -2 Query: 322 PAGGDREQGGGHEP*PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 158 P GG G PG P+ P + + P H P G R R Y H +H Sbjct: 16 PGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGS-PHHTPPYGPRSRPYGSSHSPRH 69
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = -3 Query: 321 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHXXXXXXXXXXXTPNSISI 151 ++ +I +V N D +NR+G PY+LL P + + PNSISI Sbjct: 877 KMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>CAD16_MOUSE (O88338) Cadherin-16 precursor (Kidney-specific cadherin)| (Ksp-cadherin) Length = 830 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKF 241 V G++ DP+L NRNGP F Sbjct: 688 VSGVSEDPDLANRNGPYSF 706
>DPOL_NPVLD (P30318) DNA polymerase (EC 2.7.7.7)| Length = 1014 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -3 Query: 324 GRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNT 214 G+L E+ KV M+ DP + G +K + ++Y +T Sbjct: 651 GKLKEVVGKVEAMSDDPRILREFGLSKINFSVIYGDT 687
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 277 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 158 PGA E +RPG P+ R +GRR ++R+G P +H Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112
>LDH_BACSU (P13714) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH)| Length = 320 Score = 27.3 bits (59), Expect = 9.8 Identities = 7/17 (41%), Positives = 13/17 (76%) Frame = -3 Query: 114 AFATYETCREIGVVCVC 64 ++ TYE C++ +VC+C Sbjct: 64 SYGTYEDCKDADIVCIC 80
>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2| Length = 916 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = -2 Query: 325 RPAGGDREQGGGHEP*PGAQEPQRPG 248 RP GG R+ GGG PG Q QRPG Sbjct: 214 RPGGGQRQGGGGR---PGFQ--QRPG 234
>RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)| Length = 873 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/42 (35%), Positives = 17/42 (40%) Frame = -2 Query: 277 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQHLH 152 PG Q+PQ P LH Q + Q GHP H H Sbjct: 196 PGGQQPQVPNATPLHHG--QQMGGQAGHATHAGHGHPTHHGH 235
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/45 (35%), Positives = 17/45 (37%) Frame = -2 Query: 283 P*PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQHLHL 149 P P P RP + H PQH P HPQQH L Sbjct: 378 PQPSPHTPHRPHGLPQHPQRPQHPAP-----------HPQQHSQL 411 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,524,670 Number of Sequences: 219361 Number of extensions: 631175 Number of successful extensions: 1464 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1462 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
