ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 174 1e-40
2dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 174 1e-40
3dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 1e-40
4dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA... 174 1e-40
5ref|XM_473543.1| Oryza sativa (japonica cultivar-group), predic... 119 7e-24
6emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4,... 119 7e-24
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 119 7e-24
8dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
9dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
10dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA... 119 7e-24
11emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, ex... 94 4e-16
12emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein 94 4e-16
13emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene) 70 6e-09
14gb|AY110994.1| Zea mays CL1209_1 mRNA sequence 70 6e-09
15emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene) 62 1e-06
16gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete s... 50 0.005
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
18dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
19dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
20dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
21gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) ... 50 0.005
22gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.33
23gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 44 0.33
24emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 44 0.33
25emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chro... 42 1.3
26gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, compl... 42 1.3
27ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); ... 40 5.2
28ref|XM_467209.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
29gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 5.2
30emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chr... 40 5.2
31gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complet... 40 5.2
32gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's ... 40 5.2
33gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosom... 40 5.2
34emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 40 5.2
35emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 40 5.2
36gb|AE006025.1| Caulobacter crescentus CB15 section 351 of 359 of... 40 5.2
37gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequ... 40 5.2
38gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.2
39emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Co... 40 5.2
40dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
41gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 40 5.2
42dbj|AK064814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
43gb|AF077335.1|AF077335 Arabidopsis thaliana Anthocyaninless2 (AN... 40 5.2
44dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP2... 40 5.2
45dbj|AP003153.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 5.2
46emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chr... 40 5.2
47gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AH... 40 5.2
48gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox p... 40 5.2 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  174 bits (88), Expect = 1e-40
 Identities = 115/123 (93%), Gaps = 2/123 (1%)
 Strand = Plus / Plus

                                                                            
Query: 264      aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 323
                |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 27506920 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 27506977

                                                                            
Query: 324      gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 383
                |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 27506978 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 27507037

                   
Query: 384      gaa 386
                |||
Sbjct: 27507038 gaa 27507040



 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                            
Query: 102      acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 160
                |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 27506748 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 27506807

                                            
Query: 161      aa-aaagatccttatcacctagcaaagg 187
                ||  ||||||||||||||||||||||||
Sbjct: 27506808 aagcaagatccttatcacctagcaaagg 27506835



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 201      gcgcggttcgttcttgactca 221
                |||||||||||||||||||||
Sbjct: 27506854 gcgcggttcgttcttgactca 27506874



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 309      tagtgcaggagataagattg 328
                ||||||||||||||||||||
Sbjct: 28233337 tagtgcaggagataagattg 28233356
to top
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0657H12
          Length = 142688

 Score =  174 bits (88), Expect = 1e-40
 Identities = 115/123 (93%), Gaps = 2/123 (1%)
 Strand = Plus / Plus

                                                                         
Query: 264   aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 323
             |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 98642 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 98699

                                                                         
Query: 324   gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 383
             |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 98700 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 98759

                
Query: 384   gaa 386
             |||
Sbjct: 98760 gaa 98762



 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                         
Query: 102   acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 160
             |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 98470 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 98529

                                         
Query: 161   aa-aaagatccttatcacctagcaaagg 187
             ||  ||||||||||||||||||||||||
Sbjct: 98530 aagcaagatccttatcacctagcaaagg 98557



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 201   gcgcggttcgttcttgactca 221
             |||||||||||||||||||||
Sbjct: 98576 gcgcggttcgttcttgactca 98596
to top
>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
            insert sequence
          Length = 3437

 Score =  174 bits (88), Expect = 1e-40
 Identities = 115/123 (93%), Gaps = 2/123 (1%)
 Strand = Plus / Minus

                                                                        
Query: 264  aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 323
            |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2876 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 2819

                                                                        
Query: 324  gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 383
            |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 2818 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 2759

               
Query: 384  gaa 386
            |||
Sbjct: 2758 gaa 2756



 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 102  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 160
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 3048 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2989

                                        
Query: 161  aa-aaagatccttatcacctagcaaagg 187
            ||  ||||||||||||||||||||||||
Sbjct: 2988 aagcaagatccttatcacctagcaaagg 2961



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 201  gcgcggttcgttcttgactca 221
            |||||||||||||||||||||
Sbjct: 2942 gcgcggttcgttcttgactca 2922
to top
>dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 3114

 Score =  174 bits (88), Expect = 1e-40
 Identities = 115/123 (93%), Gaps = 2/123 (1%)
 Strand = Plus / Minus

                                                                        
Query: 264  aacactcaggcgttgcgcattgcagcgccgtcttgatcttcttgatagtgcaggagataa 323
            |||||||||||||  |||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2556 aacactcaggcgt--cgcactgcagcgccgtcttgatcttcttgatggtgcaggagatga 2499

                                                                        
Query: 324  gattgttcacggtctcgaccgattccactgtgagcttggcggtgggctggctgttcacaa 383
            |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 2498 gattgttcacggtctcgaccgattccacggtgagcttggcggtgggctggttgttgacaa 2439

               
Query: 384  gaa 386
            |||
Sbjct: 2438 gaa 2436



 Score =  111 bits (56), Expect = 2e-21
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 102  acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 160
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2728 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2669

                                        
Query: 161  aa-aaagatccttatcacctagcaaagg 187
            ||  ||||||||||||||||||||||||
Sbjct: 2668 aagcaagatccttatcacctagcaaagg 2641



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 201  gcgcggttcgttcttgactca 221
            |||||||||||||||||||||
Sbjct: 2622 gcgcggttcgttcttgactca 2602
to top
>ref|XM_473543.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                        
Query: 279  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 338
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2413 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2354

                                                    
Query: 339  cgaccgattccactgtgagcttggcggtgggctggctgtt 378
            |||| || ||||| |||||||| ||  |||||||||||||
Sbjct: 2353 cgactgactccaccgtgagcttagcactgggctggctgtt 2314
to top
>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06,
             complete sequence
          Length = 125196

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                         
Query: 279   cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 338
             |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 65295 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 65354

                                                     
Query: 339   cgaccgattccactgtgagcttggcggtgggctggctgtt 378
             |||| || ||||| |||||||| ||  |||||||||||||
Sbjct: 65355 cgactgactccaccgtgagcttagcactgggctggctgtt 65394



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                 
Query: 107   agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 158
             |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65120 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 65171



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   cgcggttcgttcttgactca 221
             ||||||||||||||||||||
Sbjct: 65215 cgcggttcgttcttgactca 65234
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                            
Query: 279      cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 338
                |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 28574505 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 28574564

                                                        
Query: 339      cgaccgattccactgtgagcttggcggtgggctggctgtt 378
                |||| || ||||| |||||||| ||  |||||||||||||
Sbjct: 28574565 cgactgactccaccgtgagcttagcactgggctggctgtt 28574604



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Plus

                                                                    
Query: 107      agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 158
                |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28574330 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 28574381



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 202      cgcggttcgttcttgactca 221
                ||||||||||||||||||||
Sbjct: 28574425 cgcggttcgttcttgactca 28574444
to top
>dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E06, full
            insert sequence
          Length = 3089

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                        
Query: 279  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 338
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2550 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2491

                                                    
Query: 339  cgaccgattccactgtgagcttggcggtgggctggctgtt 378
            |||| || ||||| |||||||| ||  |||||||||||||
Sbjct: 2490 cgactgactccaccgtgagcttagcactgggctggctgtt 2451



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 107  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 158
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2725 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2674



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  cgcggttcgttcttgactca 221
            ||||||||||||||||||||
Sbjct: 2630 cgcggttcgttcttgactca 2611
to top
>dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128F17, full
            insert sequence
          Length = 3052

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                        
Query: 279  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 338
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2533 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2474

                                                    
Query: 339  cgaccgattccactgtgagcttggcggtgggctggctgtt 378
            |||| || ||||| |||||||| ||  |||||||||||||
Sbjct: 2473 cgactgactccaccgtgagcttagcactgggctggctgtt 2434



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 107  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 158
            |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2707 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2656



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  cgcggttcgttcttgactca 221
            ||||||||||||||||||||
Sbjct: 2612 cgcggttcgttcttgactca 2593
to top
>dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 2957

 Score =  119 bits (60), Expect = 7e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                        
Query: 279  cgcattgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtct 338
            |||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct: 2434 cgcaatgcagcgccgtcttgatcttcttgatggtgcaggagataaggttgctcacggtct 2375

                                                    
Query: 339  cgaccgattccactgtgagcttggcggtgggctggctgtt 378
            |||| || ||||| |||||||| ||  |||||||||||||
Sbjct: 2374 cgactgactccaccgtgagcttagcactgggctggctgtt 2335



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                               
Query: 108  gaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 158
            ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 gaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2558



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  cgcggttcgttcttgactca 221
            ||||||||||||||||||||
Sbjct: 2514 cgcggttcgttcttgactca 2495
to top
>emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, exons 1-9
          Length = 9947

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 343
            |||||||| ||||||||||||||||| |||||| | || || |||||||||||||| || 
Sbjct: 8832 tgcagcgctgtcttgatcttcttgatggtgcagaatatgaggttgttcacggtctctact 8773

                                               
Query: 344  gattccactgtgagcttggcggtgggctggctgtt 378
            || ||||| ||||| |||||||| |||||||||||
Sbjct: 8772 gactccacggtgagtttggcggtcggctggctgtt 8738



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 164
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 9006 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 8947

                                   
Query: 165  agatccttatcacctagcaaagg 187
             ||||||||||||||||||||||
Sbjct: 8946 ggatccttatcacctagcaaagg 8924
to top
>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein
          Length = 3092

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 343
            |||||||| ||||||||||||||||| |||||| | || || |||||||||||||| || 
Sbjct: 2611 tgcagcgctgtcttgatcttcttgatggtgcagaatatgaggttgttcacggtctctact 2552

                                               
Query: 344  gattccactgtgagcttggcggtgggctggctgtt 378
            || ||||| ||||| |||||||| |||||||||||
Sbjct: 2551 gactccacggtgagtttggcggtcggctggctgtt 2517



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 74/83 (89%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 164
            |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| ||   
Sbjct: 2784 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 2725

                                   
Query: 165  agatccttatcacctagcaaagg 187
             ||||||||||||||||||||||
Sbjct: 2724 ggatccttatcacctagcaaagg 2702
to top
>emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene)
          Length = 3580

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  cttgatcttcttgatagtgcaggagataagattgttcacggtctcgaccgattccactgt 354
            ||||||||||| ||| ||||||||||  || ||| | |||||||| ||||| ||||| ||
Sbjct: 3051 cttgatcttctggatggtgcaggagagcaggttgctgacggtctccaccgactccacggt 2992

                                       
Query: 355  gagcttggcggtgggctggctgttcac 381
            |||||| ||||||||| || |||||||
Sbjct: 2991 gagcttcgcggtgggcaggttgttcac 2965



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  agtcaatacccgaaccaccac 135
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
to top
>gb|AY110994.1| Zea mays CL1209_1 mRNA sequence
          Length = 3550

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  cttgatcttcttgatagtgcaggagataagattgttcacggtctcgaccgattccactgt 354
            ||||||||||| ||| ||||||||||  || ||| | |||||||| ||||| ||||| ||
Sbjct: 3051 cttgatcttctggatggtgcaggagagcaggttgctgacggtctccaccgactccacggt 2992

                                       
Query: 355  gagcttggcggtgggctggctgttcac 381
            |||||| ||||||||| || |||||||
Sbjct: 2991 gagcttcgcggtgggcaggttgttcac 2965



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  agtcaatacccgaaccaccac 135
            |||||||||||||||||||||
Sbjct: 3469 agtcaatacccgaaccaccac 3449
to top
>emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene)
          Length = 2660

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                       
Query: 108  gaggccgagtcaatacccgaaccaccaccattgctctgtgcta 150
            ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct: 2346 gaggctgagtcaatacccgaaccaccgccattgctgtgtgcta 2304



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 290  gccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgaccgattcc 349
            |||| ||||||||||| ||| || || ||||| ||  ||| |||||| || || || |||
Sbjct: 2156 gccgccttgatcttctcgatggtacatgagatgaggctgtacacggtgtccactgactcc 2097

                                               
Query: 350  actgtgagcttggcggtgggctggctgttcacaag 384
            || || ||||| || ||||||||||||||||||||
Sbjct: 2096 accgtcagctttgctgtgggctggctgttcacaag 2062



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 199  ttgcgcggttcgttcttgactca 221
            |||||||||||||||||||||||
Sbjct: 2255 ttgcgcggttcgttcttgactca 2233
to top
>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence
          Length = 107371

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 112   ccgagtcaatacccgaaccaccacc 136
             |||||||||||||||||||||||||
Sbjct: 25596 ccgagtcaatacccgaaccaccacc 25620
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                            
Query: 284      tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 343
                ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 20267212 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 20267271

                                 
Query: 344      gattccactgtgagctt 360
                || ||||| ||||||||
Sbjct: 20267272 gactccacggtgagctt 20267288



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 115      agtcaatacccgaaccaccac 135
                |||||||||||||||||||||
Sbjct: 20266847 agtcaatacccgaaccaccac 20266867
to top
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 284   tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 343
             ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 46339 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 46398

                              
Query: 344   gattccactgtgagctt 360
             || ||||| ||||||||
Sbjct: 46399 gactccacggtgagctt 46415



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   agtcaatacccgaaccaccac 135
             |||||||||||||||||||||
Sbjct: 45974 agtcaatacccgaaccaccac 45994
to top
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0047P18
          Length = 169128

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                          
Query: 284    tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 343
              ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 160712 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 160771

                               
Query: 344    gattccactgtgagctt 360
              || ||||| ||||||||
Sbjct: 160772 gactccacggtgagctt 160788



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    agtcaatacccgaaccaccac 135
              |||||||||||||||||||||
Sbjct: 160347 agtcaatacccgaaccaccac 160367
to top
>dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040J18, full
            insert sequence
          Length = 2218

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 284  tgcagcgccgtcttgatcttcttgatagtgcaggagataagattgttcacggtctcgacc 343
            ||||| |||| ||||||||||| ||| ||||||||||  || ||| | ||||| ||||| 
Sbjct: 1642 tgcagtgccgacttgatcttctggatggtgcaggagaggaggttgctgacggtgtcgacg 1583

                             
Query: 344  gattccactgtgagctt 360
            || ||||| ||||||||
Sbjct: 1582 gactccacggtgagctt 1566



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  agtcaatacccgaaccaccac 135
            |||||||||||||||||||||
Sbjct: 2007 agtcaatacccgaaccaccac 1987
to top
>gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) mRNA, complete cds
          Length = 2423

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 112  ccgagtcaatacccgaaccaccaccattgctctgtgctaag 152
            ||||||||||||||||||||||| | ||||  |||||||||
Sbjct: 2277 ccgagtcaatacccgaaccaccagccttgcattgtgctaag 2237



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  gcggttcgttcttgactcaa 222
            ||||||||||||||||||||
Sbjct: 2151 gcggttcgttcttgactcaa 2132
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 78      atggcactggggaaatacagcc 99
               ||||||||||||||||||||||
Sbjct: 3520927 atggcactggggaaatacagcc 3520948
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 78      atggcactggggaaatacagcc 99
               ||||||||||||||||||||||
Sbjct: 2665467 atggcactggggaaatacagcc 2665446
to top
>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
             sequence
          Length = 205589

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 60    aagaaatatctaaaatgcatgg 81
             ||||||||||||||||||||||
Sbjct: 95615 aagaaatatctaaaatgcatgg 95636
to top
>emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 94643

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    ggcactggggaaatacagccg 100
             |||||||||||||||||||||
Sbjct: 19820 ggcactggggaaatacagccg 19800
to top
>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence
          Length = 166500

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 127   aaccaccaccattgctctgtgctaa 151
             |||||||||||||||| ||||||||
Sbjct: 39977 aaccaccaccattgctttgtgctaa 40001
to top
>ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); transcription factor
            AT4G00730 (ANL2) mRNA, complete cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  agtcaatacccgaaccacca 134
            ||||||||||||||||||||
Sbjct: 3018 agtcaatacccgaaccacca 2999



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  gcgcggttcgttcttgactc 220
            ||||||||||||||||||||
Sbjct: 2917 gcgcggttcgttcttgactc 2898
to top
>ref|XM_467209.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1672

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 tagtgcaggagataagattg 328
           ||||||||||||||||||||
Sbjct: 739 tagtgcaggagataagattg 758
to top
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    acccgaaccaccaccattgc 141
              ||||||||||||||||||||
Sbjct: 490925 acccgaaccaccaccattgc 490906
to top
>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cttgaagaaatatctaaaat 75
             ||||||||||||||||||||
Sbjct: 48642 cttgaagaaatatctaaaat 48661
to top
>gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complete cds
          Length = 3110

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 114  gagtcaatacccgaaccaccaccattgc 141
            ||||||||||||||||||| ||| ||||
Sbjct: 2996 gagtcaatacccgaaccactacccttgc 2969
to top
>gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 209981

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     ttgaagaaatatctaaaatg 76
              ||||||||||||||||||||
Sbjct: 157323 ttgaagaaatatctaaaatg 157304
to top
>gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosome 16, complete sequence
          Length = 165496

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    gggctggctgttcacaagaa 386
              ||||||||||||||||||||
Sbjct: 144768 gggctggctgttcacaagaa 144787
to top
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    gcgcggttcgttcttgactc 220
              ||||||||||||||||||||
Sbjct: 106303 gcgcggttcgttcttgactc 106322



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    agtcaatacccgaaccacca 134
              ||||||||||||||||||||
Sbjct: 106202 agtcaatacccgaaccacca 106221
to top
>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
             protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
             pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   gaaccaccaccattgctctg 145
             ||||||||||||||||||||
Sbjct: 63006 gaaccaccaccattgctctg 63025
to top
>gb|AE006025.1| Caulobacter crescentus CB15 section 351 of 359 of the complete genome
          Length = 10596

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  gcttggcggtgggctggctg 376
            ||||||||||||||||||||
Sbjct: 9277 gcttggcggtgggctggctg 9258
to top
>gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequence
          Length = 2075

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  agtcaatacccgaaccacca 134
            ||||||||||||||||||||
Sbjct: 1938 agtcaatacccgaaccacca 1919



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  gcgcggttcgttcttgactc 220
            ||||||||||||||||||||
Sbjct: 1837 gcgcggttcgttcttgactc 1818
to top
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 236     cggtcatccccaaggcaaaatcca 259
               ||||||||||| ||||||||||||
Sbjct: 2038679 cggtcatcccccaggcaaaatcca 2038702
to top
>emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS51ZF02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 3144

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  agtcaatacccgaaccacca 134
            ||||||||||||||||||||
Sbjct: 2957 agtcaatacccgaaccacca 2938



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  gcgcggttcgttcttgactc 220
            ||||||||||||||||||||
Sbjct: 2856 gcgcggttcgttcttgactc 2837
to top
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1743_B12
          Length = 175645

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   tagtgcaggagataagattg 328
             ||||||||||||||||||||
Sbjct: 25094 tagtgcaggagataagattg 25113
to top
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   gcgcggttcgttcttgactc 220
             ||||||||||||||||||||
Sbjct: 87429 gcgcggttcgttcttgactc 87448



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   agtcaatacccgaaccacca 134
             ||||||||||||||||||||
Sbjct: 87328 agtcaatacccgaaccacca 87347
to top
>dbj|AK064814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E09, full
           insert sequence
          Length = 1673

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 tagtgcaggagataagattg 328
           ||||||||||||||||||||
Sbjct: 739 tagtgcaggagataagattg 758
to top
>gb|AF077335.1|AF077335 Arabidopsis thaliana Anthocyaninless2 (ANL2) gene, complete cds
          Length = 9277

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  gcgcggttcgttcttgactc 220
            ||||||||||||||||||||
Sbjct: 6614 gcgcggttcgttcttgactc 6595
to top
>dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP21-564B5, complete
             sequence
          Length = 111402

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   gggctggctgttcacaagaa 386
             ||||||||||||||||||||
Sbjct: 66677 gggctggctgttcacaagaa 66658
to top
>dbj|AP003153.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-485C23, complete
            sequences
          Length = 156444

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  gggctggctgttcacaagaa 386
            ||||||||||||||||||||
Sbjct: 2705 gggctggctgttcacaagaa 2686
to top
>emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chromosome 16, complete
              sequence
          Length = 228196

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    gggctggctgttcacaagaa 386
              ||||||||||||||||||||
Sbjct: 189220 gggctggctgttcacaagaa 189201
to top
>gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds
          Length = 2953

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  agtcaatacccgaaccacca 134
            ||||||||||||||||||||
Sbjct: 2838 agtcaatacccgaaccacca 2819



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  gcgcggttcgttcttgactc 220
            ||||||||||||||||||||
Sbjct: 2737 gcgcggttcgttcttgactc 2718
to top
>gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox protein mRNA, complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 114  gagtcaatacccgaaccaccaccattgc 141
            |||||||||||||||||| |||| ||||
Sbjct: 2798 gagtcaatacccgaaccaacacccttgc 2771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,794,855
Number of Sequences: 3902068
Number of extensions: 2794855
Number of successful extensions: 50326
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50137
Number of HSP's gapped (non-prelim): 185
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top