ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl33f11 |
|---|---|
| Clone Library Name | barley_pub |
>TOP1_ARATH (P30181) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 916 Score = 63.5 bits (153), Expect = 2e-10 Identities = 25/33 (75%), Positives = 30/33 (90%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 321 WCK HEVPIEKIF+K++L KF WAMDVEP++RF Sbjct: 881 WCKRHEVPIEKIFTKSLLEKFAWAMDVEPEYRF 913
>TOP1_DAUCA (P93119) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 790 Score = 57.0 bits (136), Expect = 2e-08 Identities = 24/33 (72%), Positives = 28/33 (84%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 321 WCK H+VPIEKIF+K++LAKF WAMDV FRF Sbjct: 758 WCKRHDVPIEKIFNKSLLAKFAWAMDVVLIFRF 790
>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 972 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 321 WCK H+VPIEKIF+KT KF WA+ + + ++RF Sbjct: 939 WCKKHDVPIEKIFNKTQRTKFLWAVHMADENYRF 972
>TOP1_SCHPO (P07799) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 814 Score = 43.1 bits (100), Expect = 3e-04 Identities = 18/31 (58%), Positives = 23/31 (74%) Frame = -1 Query: 413 KTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 321 K +VPIEK+FSKTI KF WA D PD+++ Sbjct: 784 KREDVPIEKLFSKTIRDKFNWAADTPPDWKW 814
>TOP1_YEAST (P04786) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Maintenance of killer protein 1) Length = 769 Score = 41.6 bits (96), Expect = 8e-04 Identities = 18/34 (52%), Positives = 28/34 (82%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMD-VEPDFRF 321 +CK ++VPIEKIF+KT+ KF WA++ V+ ++RF Sbjct: 736 FCKKYDVPIEKIFTKTLREKFKWAIESVDENWRF 769
>TOP1_HUMAN (P11387) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 765 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 321 WCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 732 WCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 765
>TOP1_RAT (Q9WUL0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 321 WCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 734 WCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_MOUSE (Q04750) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 321 WCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 734 WCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_CRIGR (Q07050) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 321 WCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 734 WCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_CERAE (Q7YR26) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 321 WCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 734 WCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 767
>TOP1M_HUMAN (Q969P6) DNA topoisomerase I, mitochondrial precursor (EC 5.99.1.2)| (TOP1mt) Length = 601 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKTILAKFGWAMDVE-PDFRF 321 WCK VP+EKI+SKT +F WA+ + DF F Sbjct: 568 WCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 601
>TOP1_CANAL (Q00313) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 778 Score = 33.5 bits (75), Expect = 0.21 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Frame = -1 Query: 413 KTHEVPIEKIFSKTILAKFGWAMD-VEPDFRF 321 K +VPIEK+F+KT+ KF WA++ + ++RF Sbjct: 747 KKFDVPIEKLFTKTLREKFIWAIESADENWRF 778
>TAF7_YEAST (Q05021) Transcription initiation factor TFIID subunit 7| (TBP-associated factor 7) (TBP-associated factor 67 kDa) (TAFII-67) Length = 590 Score = 33.1 bits (74), Expect = 0.27 Identities = 23/82 (28%), Positives = 42/82 (51%) Frame = +3 Query: 75 RPKCKHEFRQSDHSKYGREDG*KKSLQRECRVLPSSRSRETSKNKHRALPLLLVAVRCPG 254 +PK K ++ S G+E K SL+ + + ++ E K H+A L L +R PG Sbjct: 42 KPKLKINLKKKKESADGKEK--KNSLKLKLNL---KKNEEPVKKIHKAPKLRLKPIRIPG 96 Query: 255 EGLEAESNLPRGHWLIQNPILL 320 E ++E++ LI++ ++L Sbjct: 97 EAYDSEASDIEDDPLIESGVIL 118
>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 829 Score = 30.4 bits (67), Expect = 1.8 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = -1 Query: 419 WCKTHEVPIEKIFSKT 372 WCK + VPIEKI++KT Sbjct: 788 WCKKYGVPIEKIYNKT 803
>DNLJ_THEFI (Q9ZHI0) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) (Tfi DNA ligase) Length = 670 Score = 28.9 bits (63), Expect = 5.2 Identities = 20/72 (27%), Positives = 31/72 (43%) Frame = +3 Query: 189 RETSKNKHRALPLLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLCK 368 R+ ++KHR L LL A+ PG G NL R + + E L++ +L Sbjct: 496 RQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGELTA 555 Query: 369 NRLAENLLNRDF 404 + E L + F Sbjct: 556 RAILETLKDPAF 567
>PP1G_XENLA (P36874) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) Length = 323 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 225 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 365 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_RAT (P63088) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 225 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 365 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_MOUSE (P63087) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 225 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 365 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_HUMAN (P36873) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 225 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 365 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_CANFA (Q8MJ46) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 225 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 365 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_BOVIN (P61287) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 225 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 365 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>CASP2_HUMAN (P42575) Caspase-2 precursor (EC 3.4.22.-) (CASP-2) (ICH-1| protease) (ICH-1L/1S) [Contains: Caspase-2 subunit p18; Caspase-2 subunit p13; Caspase-2 subunit p12] Length = 452 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +3 Query: 255 EGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLCKNRLAENLLNRDFMGFAP 419 +G A N RG W I+ + SE D+H L K N L +D G+AP Sbjct: 372 KGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVK----VNALIKDREGYAP 422 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,206,470 Number of Sequences: 219361 Number of extensions: 1335996 Number of successful extensions: 3160 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3158 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
