ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 155 2e-35
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 44 0.062
3emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.24
4emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.24
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 3.8
6gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 3.8
7emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 3.8
8emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 3.8
9gb|AC025105.10| Homo sapiens chromosome 18, clone RP11-695P1, co... 38 3.8
10dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 3.8
11gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 38 3.8
12gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 3.8
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.8
14gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 3.8
15dbj|AB210042.1| Homo sapiens mRNA for SDCCAG33 variant protein, ... 38 3.8
16gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 3.8
17gb|AC116003.7| Homo sapiens chromosome 18, clone RP11-321M21, co... 38 3.8
18dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 3.8
19emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 3.8

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  155 bits (78), Expect = 2e-35
 Identities = 84/86 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    attattgggcaaaacaagggattttttctgcacacgacaatccattgaccggtagccagc 60
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 2893 attattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagccagc 2834

                                      
Query: 61   tgagctgagcttccgcatgccgatca 86
            ||||||||||||||||||||||||||
Sbjct: 2833 tgagctgagcttccgcatgccgatca 2808



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 44.1 bits (22), Expect = 0.062
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 1    attattgggcaaaacaagggattttttctgcacacgac 38
            |||||||||||||  |||||| |||||||| |||||||
Sbjct: 1089 attattgggcaaatgaagggaatttttctgtacacgac 1052



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    aaacaagggattttttctgca 32
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     gcaaaacaagggattttttct 29
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 6       tgggcaaaacaagggattt 24
               |||||||||||||||||||
Sbjct: 3842397 tgggcaaaacaagggattt 3842415



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    ccagctgagctgagcttcc 74
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      gcaaaacaagggatttttt 27
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     gcaaaacaagggatttttt 27
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>gb|AC025105.10| Homo sapiens chromosome 18, clone RP11-695P1, complete sequence
          Length = 201027

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     ttttctgcacacgacaatc 42
              |||||||||||||||||||
Sbjct: 165969 ttttctgcacacgacaatc 165951



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 21      attttttctgcacacgacaatccattg 47
               |||||||| |||||||||||| |||||
Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082



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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      tgggcaaaacaagggattt 24
              |||||||||||||||||||
Sbjct: 121021 tgggcaaaacaagggattt 121039



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    agctgagctgagcttccgc 76
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 6       tgggcaaaacaagggattt 24
               |||||||||||||||||||
Sbjct: 3842508 tgggcaaaacaagggattt 3842526



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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     tgggcaaaacaagggattt 24
             |||||||||||||||||||
Sbjct: 48870 tgggcaaaacaagggattt 48888



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>dbj|AB210042.1| Homo sapiens mRNA for SDCCAG33 variant protein, partial cds, clone:
           pf00940
          Length = 7081

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  ttttctgcacacgacaatc 42
           |||||||||||||||||||
Sbjct: 771 ttttctgcacacgacaatc 753



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 58     agctgagctgagcttccgc 76
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>gb|AC116003.7| Homo sapiens chromosome 18, clone RP11-321M21, complete sequence
          Length = 189167

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    ttttctgcacacgacaatc 42
             |||||||||||||||||||
Sbjct: 28382 ttttctgcacacgacaatc 28364



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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 6    tgggcaaaacaagggattt 24
            |||||||||||||||||||
Sbjct: 1147 tgggcaaaacaagggattt 1165



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      gcaaaacaagggatttttt 27
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 632,612
Number of Sequences: 3902068
Number of extensions: 632612
Number of successful extensions: 43576
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43494
Number of HSP's gapped (non-prelim): 82
length of query: 89
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 68
effective length of database: 17,151,101,840
effective search space: 1166274925120
effective search space used: 1166274925120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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