Clone Name | rbastl33f09 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 155 bits (78), Expect = 2e-35 Identities = 84/86 (97%) Strand = Plus / Minus Query: 1 attattgggcaaaacaagggattttttctgcacacgacaatccattgaccggtagccagc 60 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 2893 attattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagccagc 2834 Query: 61 tgagctgagcttccgcatgccgatca 86 |||||||||||||||||||||||||| Sbjct: 2833 tgagctgagcttccgcatgccgatca 2808
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 44.1 bits (22), Expect = 0.062 Identities = 34/38 (89%) Strand = Plus / Minus Query: 1 attattgggcaaaacaagggattttttctgcacacgac 38 ||||||||||||| |||||| |||||||| ||||||| Sbjct: 1089 attattgggcaaatgaagggaatttttctgtacacgac 1052
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.24 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 aaacaagggattttttctgca 32 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.24 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 gcaaaacaagggattttttct 29 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 tgggcaaaacaagggattt 24 ||||||||||||||||||| Sbjct: 3842397 tgggcaaaacaagggattt 3842415
>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence Length = 187121 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 ccagctgagctgagcttcc 74 ||||||||||||||||||| Sbjct: 93147 ccagctgagctgagcttcc 93129
>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete sequence Length = 157981 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 gcaaaacaagggatttttt 27 ||||||||||||||||||| Sbjct: 129429 gcaaaacaagggatttttt 129411
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 gcaaaacaagggatttttt 27 ||||||||||||||||||| Sbjct: 89166 gcaaaacaagggatttttt 89184
>gb|AC025105.10| Homo sapiens chromosome 18, clone RP11-695P1, complete sequence Length = 201027 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ttttctgcacacgacaatc 42 ||||||||||||||||||| Sbjct: 165969 ttttctgcacacgacaatc 165951
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 3.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 21 attttttctgcacacgacaatccattg 47 |||||||| |||||||||||| ||||| Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 tgggcaaaacaagggattt 24 ||||||||||||||||||| Sbjct: 121021 tgggcaaaacaagggattt 121039
>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence Length = 185162 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 agctgagctgagcttccgc 76 ||||||||||||||||||| Sbjct: 29471 agctgagctgagcttccgc 29453
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 tgggcaaaacaagggattt 24 ||||||||||||||||||| Sbjct: 3842508 tgggcaaaacaagggattt 3842526
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 tgggcaaaacaagggattt 24 ||||||||||||||||||| Sbjct: 48870 tgggcaaaacaagggattt 48888
>dbj|AB210042.1| Homo sapiens mRNA for SDCCAG33 variant protein, partial cds, clone: pf00940 Length = 7081 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ttttctgcacacgacaatc 42 ||||||||||||||||||| Sbjct: 771 ttttctgcacacgacaatc 753
>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence Length = 199128 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 agctgagctgagcttccgc 76 ||||||||||||||||||| Sbjct: 101444 agctgagctgagcttccgc 101426
>gb|AC116003.7| Homo sapiens chromosome 18, clone RP11-321M21, complete sequence Length = 189167 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ttttctgcacacgacaatc 42 ||||||||||||||||||| Sbjct: 28382 ttttctgcacacgacaatc 28364
>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full insert sequence Length = 3941 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 tgggcaaaacaagggattt 24 ||||||||||||||||||| Sbjct: 1147 tgggcaaaacaagggattt 1165
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 38.2 bits (19), Expect = 3.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 gcaaaacaagggatttttt 27 ||||||||||||||||||| Sbjct: 225395 gcaaaacaagggatttttt 225377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 632,612 Number of Sequences: 3902068 Number of extensions: 632612 Number of successful extensions: 43576 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43494 Number of HSP's gapped (non-prelim): 82 length of query: 89 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 68 effective length of database: 17,151,101,840 effective search space: 1166274925120 effective search space used: 1166274925120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)