ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
2dbj|AK058272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
4emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119... 52 0.001
5dbj|AP006664.1| Lotus japonicus genomic DNA, chromosome 5, clone... 46 0.089
6dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.089
7dbj|AP006422.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.089
8dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.089
9dbj|AP004907.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.089
10dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.089
11dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.089
12gb|AE000658.1|HUAE000658 Homo sapiens T-cell receptor alpha delt... 42 1.4
13emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
15emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in... 42 1.4
16ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 42 1.4
17gb|AC153801.1| Mus musculus 10 NOVECTOR RP24-255E19 (Roswell Par... 40 5.5
18gb|AC110214.7| Mus musculus chromosome 8, clone RP24-485L5, comp... 40 5.5
19gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, comp... 40 5.5
20gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence 40 5.5
21gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, compl... 40 5.5
22emb|AL603824.4| Human DNA sequence from clone RP11-235G8 on chro... 40 5.5
23gb|AC161188.5| Mus musculus chromosome 8, clone RP23-227D17, com... 40 5.5
24emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, ... 40 5.5
25emb|AL021890.1|ATT8O5 Arabidopsis thaliana DNA chromosome 4, BAC... 40 5.5
26gb|AC090912.6| Homo sapiens chromosome 18, clone RP11-370A5, com... 40 5.5
27gb|AC090914.9| Homo sapiens chromosome 18, clone RP11-739L10, co... 40 5.5
28emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on ch... 40 5.5
29emb|BX511162.8| Zebrafish DNA sequence from clone DKEY-240B22 in... 40 5.5
30gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 ma... 40 5.5
31gb|AC005897.3| Arabidopsis thaliana chromosome 2 clone T10J7 map... 40 5.5
32gb|AY065581.1| Zea mays clone tac 923.17 3' Ac insertion site se... 40 5.5
33gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complet... 40 5.5
34gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete s... 40 5.5
35gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete... 40 5.5
36gb|AC023279.2|AC023279 Genomic sequence for Arabidopsis thaliana... 40 5.5
37emb|AJ575247.1|LJA575247 Lotus japonicus nfr1 gene for Nod-facto... 40 5.5
38emb|AJ575246.1|LJA575246 Lotus japonicus nfr1 gene for Nod-facto... 40 5.5
39gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome... 40 5.5
40emb|CT573093.3| CH250-1K10, complete sequence 40 5.5
41emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 i... 40 5.5
42gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, com... 40 5.5
43dbj|AP006536.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.5
44dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 5.5
45gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome ... 40 5.5
46dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.5
47emb|AL663101.8| Mouse DNA sequence from clone RP23-205M7 on chro... 40 5.5
48gb|J04804.1|CELDEB1A C.elegans vinculin (deb-1) gene, complete cds 40 5.5 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 356     gcttctctttcttgtcagcacttgttttgctggattttacactgataacgccgc 409
               ||||||||| |||||||||  |||| ||| ||||||| ||||||||||| ||||
Sbjct: 3596123 gcttctcttgcttgtcagcctttgtcttgttggatttcacactgataacaccgc 3596070
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>dbj|AK058272.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B09, full
            insert sequence
          Length = 1839

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 356  gcttctctttcttgtcagcacttgttttgctggattttacactgataacgccgc 409
            ||||||||| |||||||||  |||| ||| ||||||| ||||||||||| ||||
Sbjct: 1447 gcttctcttgcttgtcagcctttgtcttgttggatttcacactgataacaccgc 1394
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 356     gcttctctttcttgtcagcacttgttttgctggattttacactgataacgccgc 409
               ||||||||| |||||||||  |||| ||| ||||||| ||||||||||| ||||
Sbjct: 3596068 gcttctcttgcttgtcagcctttgtcttgttggatttcacactgataacaccgc 3596015
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>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122128

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 356   gcttctctttcttgtcagcacttgttttgctggattttacactgataacgccgc 409
             ||||||||| |||||||||  |||| ||| ||||||| ||||||||||| ||||
Sbjct: 93305 gcttctcttgcttgtcagcctttgtcttgttggatttcacactgataacaccgc 93358
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>dbj|AP006664.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01C14, TM0359,
              complete sequence
          Length = 112181

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 101    ttgaggcatggtggtgccatagggttt 127
              |||||||||||||||||||| ||||||
Sbjct: 100307 ttgaggcatggtggtgccatggggttt 100333
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>dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT35D17, TM0104,
           complete sequence
          Length = 96208

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 101 ttgaggcatggtggtgccatagggttt 127
           |||||||||||||||||||| ||||||
Sbjct: 938 ttgaggcatggtggtgccatggggttt 912
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>dbj|AP006422.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT33E11, TM0310b,
             complete sequence
          Length = 93261

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 101   ttgaggcatggtggtgccatagggttt 127
             |||||||||||||||||||| ||||||
Sbjct: 27548 ttgaggcatggtggtgccatggggttt 27522
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>dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18E24, TM0074,
             complete sequence
          Length = 131741

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 101   ttgaggcatggtggtgccatagggttt 127
             |||||||||||||||||||| ||||||
Sbjct: 62116 ttgaggcatggtggtgccatggggttt 62142
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>dbj|AP004907.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11D15, TM0065,
             complete sequence
          Length = 115046

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 101   ttgaggcatggtggtgccatagggttt 127
             |||||||||||||||||||| ||||||
Sbjct: 32698 ttgaggcatggtggtgccatggggttt 32672
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>dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04C07, TM0098a,
            complete sequence
          Length = 33254

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 101  ttgaggcatggtggtgccatagggttt 127
            |||||||||||||||||||| ||||||
Sbjct: 1358 ttgaggcatggtggtgccatggggttt 1384
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>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087,
             complete sequence
          Length = 124300

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 101   ttgaggcatggtggtgccatagggttt 127
             |||||||||||||||||||| ||||||
Sbjct: 35680 ttgaggcatggtggtgccatggggttt 35654
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>gb|AE000658.1|HUAE000658 Homo sapiens T-cell receptor alpha delta locus from bases 1 to 250529
              (section 1 of 5) of the Complete Nucleotide Sequence
          Length = 250529

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    ctttccctgtgcttctctttc 366
              |||||||||||||||||||||
Sbjct: 183067 ctttccctgtgcttctctttc 183087
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>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     tgcgaaagcatattccaacaa 25
             |||||||||||||||||||||
Sbjct: 55392 tgcgaaagcatattccaacaa 55412
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 5        tgcgaaagcatattccaacaa 25
                |||||||||||||||||||||
Sbjct: 20952160 tgcgaaagcatattccaacaa 20952180
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>emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in linkage group 3, complete
              sequence
          Length = 165569

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     acaggcgatacatcaaaatca 47
              |||||||||||||||||||||
Sbjct: 108976 acaggcgatacatcaaaatca 108956
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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    ctttccctgtgcttctctttc 366
              |||||||||||||||||||||
Sbjct: 183067 ctttccctgtgcttctctttc 183087
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>gb|AC153801.1| Mus musculus 10 NOVECTOR RP24-255E19 (Roswell Park Cancer Institute
              (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 156755

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    ttccctgtgcttctctttct 367
              ||||||||||||||||||||
Sbjct: 120844 ttccctgtgcttctctttct 120825
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>gb|AC110214.7| Mus musculus chromosome 8, clone RP24-485L5, complete sequence
          Length = 213387

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 377   ttgttttgctggattttacactga 400
             ||||||||||| ||||||||||||
Sbjct: 64847 ttgttttgctgtattttacactga 64870
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>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence
          Length = 212061

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   ttcaaaataccaggatcaga 254
             ||||||||||||||||||||
Sbjct: 19943 ttcaaaataccaggatcaga 19924
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>gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence
          Length = 31787

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttcttcttcttctccgatct 308
             ||||||||||||||||||||
Sbjct: 10672 ttcttcttcttctccgatct 10653
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>gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, complete sequence
          Length = 208489

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aattccaattggccagtatt 74
             ||||||||||||||||||||
Sbjct: 67319 aattccaattggccagtatt 67338
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>emb|AL603824.4| Human DNA sequence from clone RP11-235G8 on chromosome 10 Contains part
             of the gene for cyclin fold protein 1 (CFP1) (CBCP1),
             complete sequence
          Length = 89871

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   tgtcagcacttgttttgctg 387
             ||||||||||||||||||||
Sbjct: 32293 tgtcagcacttgttttgctg 32274
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>gb|AC161188.5| Mus musculus chromosome 8, clone RP23-227D17, complete sequence
          Length = 143672

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 377    ttgttttgctggattttacactga 400
              ||||||||||| ||||||||||||
Sbjct: 102829 ttgttttgctgtattttacactga 102852
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>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56
          Length = 196247

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   ttcttcttcttctccgatct 308
             ||||||||||||||||||||
Sbjct: 33019 ttcttcttcttctccgatct 33038
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>emb|AL021890.1|ATT8O5 Arabidopsis thaliana DNA chromosome 4, BAC clone T8O5 (ESSAII project)
          Length = 83029

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   ttcttcttcttctccgatct 308
             ||||||||||||||||||||
Sbjct: 31531 ttcttcttcttctccgatct 31550
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>gb|AC090912.6| Homo sapiens chromosome 18, clone RP11-370A5, complete sequence
          Length = 187374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 376   cttgttttgctggattttacactgataa 403
             ||||||||| ||||| ||||||||||||
Sbjct: 36968 cttgttttgatggatgttacactgataa 36941
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>gb|AC090914.9| Homo sapiens chromosome 18, clone RP11-739L10, complete sequence
          Length = 144425

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 376   cttgttttgctggattttacactgataa 403
             ||||||||| ||||| ||||||||||||
Sbjct: 33363 cttgttttgatggatgttacactgataa 33390
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>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains part
              of the gene for a novel protein (likely ortholog to homo
              sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    tcctattcttcttcttctcc 303
              ||||||||||||||||||||
Sbjct: 144836 tcctattcttcttcttctcc 144817
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>emb|BX511162.8| Zebrafish DNA sequence from clone DKEY-240B22 in linkage group 1,
             complete sequence
          Length = 119612

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   tggcgatttcaaaataccag 247
             ||||||||||||||||||||
Sbjct: 28802 tggcgatttcaaaataccag 28783
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>gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 map nga361, complete
             sequence
          Length = 100665

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttcttcttcttctccgatct 308
             ||||||||||||||||||||
Sbjct: 56371 ttcttcttcttctccgatct 56352
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>gb|AC005897.3| Arabidopsis thaliana chromosome 2 clone T10J7 map mi398, complete
             sequence
          Length = 87119

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttcttcttcttctccgatct 308
             ||||||||||||||||||||
Sbjct: 62631 ttcttcttcttctccgatct 62612
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>gb|AY065581.1| Zea mays clone tac 923.17 3' Ac insertion site sequence
          Length = 281

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 agtcctattcttcttcttct 301
           ||||||||||||||||||||
Sbjct: 152 agtcctattcttcttcttct 133
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>gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complete sequence
          Length = 105489

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   caacctctgcctccctctta 192
             ||||||||||||||||||||
Sbjct: 42361 caacctctgcctccctctta 42342
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>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence
          Length = 263876

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   ttccctgtgcttctctttct 367
             ||||||||||||||||||||
Sbjct: 34607 ttccctgtgcttctctttct 34588
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>gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete sequence
          Length = 135809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    tttggcaacctctgcctccc 187
              ||||||||||||||||||||
Sbjct: 119759 tttggcaacctctgcctccc 119740
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>gb|AC023279.2|AC023279 Genomic sequence for Arabidopsis thaliana BAC F12K21 from chromosome I,
             complete sequence
          Length = 117585

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttcttcttcttctccgatct 308
             ||||||||||||||||||||
Sbjct: 66126 ttcttcttcttctccgatct 66107
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>emb|AJ575247.1|LJA575247 Lotus japonicus nfr1 gene for Nod-factor receptor 1b, exons 1-12
          Length = 10253

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  ttgaggcatggtggtgccat 120
            ||||||||||||||||||||
Sbjct: 1966 ttgaggcatggtggtgccat 1985
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>emb|AJ575246.1|LJA575246 Lotus japonicus nfr1 gene for Nod-factor receptor 1a, exons 1-12
          Length = 10253

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  ttgaggcatggtggtgccat 120
            ||||||||||||||||||||
Sbjct: 1966 ttgaggcatggtggtgccat 1985
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>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence
          Length = 211561

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aattccaattggccagtatt 74
             ||||||||||||||||||||
Sbjct: 35272 aattccaattggccagtatt 35253
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>emb|CT573093.3| CH250-1K10, complete sequence
          Length = 185363

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    aggctttggagaggcttctc 227
              ||||||||||||||||||||
Sbjct: 176272 aggctttggagaggcttctc 176291
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>emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 in linkage group 5,
             complete sequence
          Length = 145957

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    tgaagcaaatggtacaacaa 98
             ||||||||||||||||||||
Sbjct: 22996 tgaagcaaatggtacaacaa 23015
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>gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, complete sequence
          Length = 43308

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   gcaacctctgcctccctctt 191
             ||||||||||||||||||||
Sbjct: 33975 gcaacctctgcctccctctt 33994
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>dbj|AP006536.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05B16, TM0545,
             complete sequence
          Length = 66136

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ttgaggcatggtggtgccat 120
             ||||||||||||||||||||
Sbjct: 51933 ttgaggcatggtggtgccat 51952
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>dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT09H13, TM0200,
             complete sequence
          Length = 91393

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   aggcatggtggtgccatagggttt 127
             ||||||||||||||||| ||||||
Sbjct: 39695 aggcatggtggtgccatggggttt 39672
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>gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome 9, complete sequence
          Length = 264591

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   ttcaaaataccaggatcaga 254
             ||||||||||||||||||||
Sbjct: 20107 ttcaaaataccaggatcaga 20126
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>dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04F23, TM0044a,
             complete sequence
          Length = 65620

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ttgaggcatggtggtgccat 120
             ||||||||||||||||||||
Sbjct: 60638 ttgaggcatggtggtgccat 60657
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>emb|AL663101.8| Mouse DNA sequence from clone RP23-205M7 on chromosome X, complete
              sequence
          Length = 216297

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    atctaccaccactatcttgt 324
              ||||||||||||||||||||
Sbjct: 212785 atctaccaccactatcttgt 212804
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>gb|J04804.1|CELDEB1A C.elegans vinculin (deb-1) gene, complete cds
          Length = 12263

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 289 ttcttcttcttctccgatct 308
           ||||||||||||||||||||
Sbjct: 890 ttcttcttcttctccgatct 909


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,240,369
Number of Sequences: 3902068
Number of extensions: 6240369
Number of successful extensions: 367919
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 367560
Number of HSP's gapped (non-prelim): 359
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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