ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1629_HAEIN (P45280) Hypothetical protein HI1629 33 0.20
2GBGT1_MOUSE (Q8VI38) Globoside alpha-1,3-N-acetylgalactosaminylt... 32 0.78
3YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c 31 1.0
4NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 30 1.7
5R1AB_CVPFS (P18457) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 30 2.3
6R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 30 2.3
7MICA2_HUMAN (O94851) Protein MICAL-2 30 2.3
8RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigment... 29 3.8
9STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (F... 29 3.8
10Y3474_PSEAE (O68826) Hypothetical membrane protein PA3474 29 3.8
11PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (... 29 5.0
12TAGH_ENTFA (Q831L8) Teichoic acids export ATP-binding protein ta... 29 5.0
13CORO_YEAST (Q06440) Coronin-like protein 28 6.6
14GBGT1_HUMAN (Q8N5D6) Globoside alpha-1,3-N-acetylgalactosaminylt... 28 8.6
15STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (F... 28 8.6
16RNZ_PORGI (Q51834) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNa... 28 8.6
17DEPP_PONPY (Q5RBE4) Protein DEPP 28 8.6
18DEPP_HUMAN (Q9NTK1) Protein DEPP (Decidual protein induced by pr... 28 8.6

>Y1629_HAEIN (P45280) Hypothetical protein HI1629|
          Length = 212

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 224 FSQFGCTGLFFFRQMHGLPSMPFSLV*GDVRRVTVCRYGWVDFCSGSCTI 75
           FSQ+G   LF  R + GL + P  +V G  RRV+  R+  +DFC+   ++
Sbjct: 119 FSQYGNRVLFVARFLPGLRA-PIYMVSGITRRVSYVRFVLIDFCAAIISV 167



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>GBGT1_MOUSE (Q8VI38) Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1|
           (EC 2.4.1.88) (Forssman glycolipid synthetase)
          Length = 347

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +1

Query: 190 KKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEK 369
           +K KP+QP  +  Y         P PK  E      H P   L L P   P + E T + 
Sbjct: 53  RKEKPLQPVTQLQY---------PQPKLLE------HGPTELLTLTPWLAPIVSEGTFDP 97

Query: 370 HLKKCGQAPVNL 405
            L K    P+NL
Sbjct: 98  ELLKSMYQPLNL 109



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>YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c|
          Length = 1310

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
 Frame = +1

Query: 79  VHEPLQKSTH---PYLQTVTRRTSPHTKENGIEGKPCIC---------RKKNKPVQPNCE 222
           + EP   S H   P L+T T  +SP TK+N  + +             R+ N    P+ +
Sbjct: 593 IREPSFSSEHKPQPSLKTTTDVSSPETKQNIADIRKTTLTDQTEEFTERRDNNGSIPSKQ 652

Query: 223 KDYSQTDDQT*QPSPK-----WHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHLKK 381
               Q   +   PS +      H   + PS +P         S+P+ Q+TTE KHL+K
Sbjct: 653 PSDEQHLGKESLPSQQSTVSNHHRKESIPSKQPTEGQHARQESLPS-QQTTETKHLRK 709



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>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 447

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 21/82 (25%), Positives = 43/82 (52%)
 Frame = -2

Query: 288 VDWFMPFRTWLSGLIISLRVVLLTVWLHGLVFFPADAWLALNAIFLGMRRRPTCNCLQIW 109
           +DW   F   LS  + S  +++LT+W+ GL+F   +   +LN +F+ +    +   + + 
Sbjct: 54  IDWIYIFCN-LSFNMYSYGLIMLTLWIFGLIFISLNN-NSLNCLFMNLLLMISLLLVFLS 111

Query: 108 MG*FLQWLMYYCGHRYIIVVFF 43
           M   L +L Y  G   ++++F+
Sbjct: 112 MNLLLFYLFYEFG---LLLIFY 130



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>R1AB_CVPFS (P18457) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
           [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
           [Contains: p41; Unknown protein 3] (Fragment)
          Length = 533

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +2

Query: 113 ICKQLHVGRLLIPRKMALRASHASAGKKTSPCSQTVRRTTRKLMIKPDNQVRNGMNQSTH 292
           +C+ L+   L +P KM +    A+     +P S  +RR      I  DN +R+ ++ +  
Sbjct: 282 LCQYLNTTTLCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADF 341

Query: 293 PVMSHC 310
            V   C
Sbjct: 342 SVTGDC 347



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>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +2

Query: 113  ICKQLHVGRLLIPRKMALRASHASAGKKTSPCSQTVRRTTRKLMIKPDNQVRNGMNQSTH 292
            +C+ L+   L +P KM +    A+     +P S  +RR      I  DN +R+ ++ +  
Sbjct: 6433 LCQYLNTTTLCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADF 6492

Query: 293  PVMSHC 310
             V   C
Sbjct: 6493 SVTGDC 6498



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>MICA2_HUMAN (O94851) Protein MICAL-2|
          Length = 1124

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +1

Query: 40  SKEYNNNVSVSTIVHEPLQK----STHPYLQTVTRRTSPHTKENGIEGKPCICRKKNKPV 207
           SKE  N   V ++ ++ L K    + +P L    RR S      GI GKP +C     PV
Sbjct: 706 SKEGGNQNKVKSMANQLLAKFEESTRNPSLMKQERRVS------GI-GKPVLCSSSGPPV 758

Query: 208 QPNCEKDYSQTDDQT*QPSP 267
              C K     ++ T  PSP
Sbjct: 759 HSCCPK----PEEATPSPSP 774



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>RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2105

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 170  ASHASAGKKTSPCSQTVRRTTRKLMIKPDN-QVRNGM----NQSTHPVMSHC 310
            +SH S+GK+     Q+ R TT+   +  DN   R GM    N S   +  HC
Sbjct: 954  SSHTSSGKRNDSILQSNRHTTKSASLTGDNLGKRVGMSFDKNSSEELIQDHC 1005



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>STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
 Frame = +1

Query: 76  IVHEPLQKSTHPYLQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYS------- 234
           I H  L  ++ P   T TR     T         C  R ++    P   ++ +       
Sbjct: 10  ITHTQLHSNSQPQSCTCTRHRQ--TFSQSCRQSHCGSRSRSSSQSPASHRNPTGAHSSSG 67

Query: 235 -QTDDQT*QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEK 369
            Q+      P PK H+   +  H P+R  +L  CS P  ++  E K
Sbjct: 68  HQSQSPNTSPPPKRHKKTMNSHHSPMRPTIL-HCSCPKNRKNLEGK 112



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>Y3474_PSEAE (O68826) Hypothetical membrane protein PA3474|
          Length = 286

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 261 WLSGLIISLRVVLLTVWLHGLVFFPADAWLALNAIFLG 148
           +L+G + S   VL  V L GLVF P   W  +   F+G
Sbjct: 21  YLAGQVDSYFAVLTRVLLAGLVFLPLTRWRGVEPRFVG 58



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>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA cleavage|
            complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +1

Query: 187  RKKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEPLRCL---LLAPCSVPTLQE 354
            R   K   P+C +DY  T      PSP    PV +P +  L  +   L  PC  P ++E
Sbjct: 1567 RVDGKIYHPSCYEDYQNTSSFDCTPSPS-KTPVENPLNIMLNIVKNELQEPCDSPKVKE 1624



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>TAGH_ENTFA (Q831L8) Teichoic acids export ATP-binding protein tagH (EC|
           3.6.3.40)
          Length = 447

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +2

Query: 32  TISVKNTTIMYLCPQ*YMSHCKNQPIHICKQ-LH----VGRLLIPRKMALRASHASAGKK 196
           T+  K+  I+ LC   Y+S    + I +    +H    + R+ +P K+A + ++A    K
Sbjct: 306 TLGTKSLLILLLCMIFYVSLTFVKGISLTTAFIHPAETIQRIFVPEKVAGKDTNAVKTTK 365

Query: 197 TSPCSQTVRRTTRKLMIKPDNQVRNGMNQ 283
           T P S    R   ++   P N   N  ++
Sbjct: 366 TKPASTKESRQQEEVQPSPTNVPENNNSE 394



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>CORO_YEAST (Q06440) Coronin-like protein|
          Length = 651

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 109 PYLQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVN 288
           P      R   P T+E  +E          K  QP  EK  S+++ +  Q +PK   P+ 
Sbjct: 409 PSFHEAKRPQQPTTQETALE---------EKKEQPKVEKPISESEKEVKQEAPKSPSPLK 459

Query: 289 SPS 297
           S S
Sbjct: 460 SAS 462



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>GBGT1_HUMAN (Q8N5D6) Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1|
           (EC 2.4.1.-) (Forssman glycolipid synthetase-like
           protein)
          Length = 347

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +1

Query: 190 KKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEK 369
           K+ KP+QP     Y         P PK  E      H P + L L P   P + E T   
Sbjct: 53  KREKPLQPVVWSQY---------PQPKLLE------HRPTQLLTLTPWLAPIVSEGTFNP 97

Query: 370 HLKKCGQAPVNL 405
            L +    P+NL
Sbjct: 98  ELLQHIYQPLNL 109



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>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
 Frame = +1

Query: 76  IVHEPLQKSTHPYLQTVTR--RTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQ 249
           I H  L  ++ P  +T TR  +T   +      G       ++     N    +S +  Q
Sbjct: 10  ITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSRSSSQSPASHRNPTGAHSSSGHQ 69

Query: 250 T*QPS----PKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHLKK 381
           +  P+    PK H+   +  H P R  +L  CS P  ++  E K  KK
Sbjct: 70  SQSPNTSPPPKRHKKTMNSHHSPRRPTIL-HCSCPKNRKNLEGKLKKK 116



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>RNZ_PORGI (Q51834) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 304

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   PHTHFHLSSKTISVKNTTIMYLCPQ*YMSHCKNQPIHICKQLHV 133
           P TH H SS+ I +++   M  C +      +++ +H  + +H+
Sbjct: 16  PTTHHHPSSQVIDLRDKLYMIDCGEGVQRQFRHEKLHFGRLIHI 59



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>DEPP_PONPY (Q5RBE4) Protein DEPP|
          Length = 212

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 316 LLLAPCSVPTLQETTEEKHLKKCGQAP 396
           LLL+   +PT++ETTEE  L   GQ P
Sbjct: 5   LLLSVAHLPTIRETTEEMLLGGPGQEP 31



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>DEPP_HUMAN (Q9NTK1) Protein DEPP (Decidual protein induced by progesterone)|
           (Fasting-induced gene protein) (FIG)
          Length = 212

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 316 LLLAPCSVPTLQETTEEKHLKKCGQAP 396
           LLL+   +PT++ETTEE  L   GQ P
Sbjct: 5   LLLSVAHLPTIRETTEEMLLGGPGQEP 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.130    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,293,778
Number of Sequences: 219361
Number of extensions: 1327031
Number of successful extensions: 3688
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3685
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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