ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LIN12_CAEEL (P14585) Protein lin-12 precursor (Abnormal cell lin... 30 1.9
2HEMA_PTV10 (Q70KP1) Hemagglutinin-esterase homolog precursor (EC... 30 1.9
3PHLC_CLOHA (P59026) Phospholipase C precursor (EC 3.1.4.3) (PLC)... 30 2.5
4CARD9_RAT (Q9EPY0) Caspase recruitment domain-containing protein... 30 3.2
5ALG14_YARLI (Q6CF02) UDP-N-acetylglucosamine transferase subunit... 30 3.2
6CMB2_DIACA (Q42498) MADS-box protein CMB2 29 5.5
7FAS1_YARLI (P34229) Fatty acid synthase beta subunit (EC 2.3.1.8... 28 9.4
8VG6_SPV4 (P11338) Gene 6 protein 28 9.4
9PANX2_RAT (P60571) Pannexin-2 28 9.4
10PANX2_MOUSE (Q6IMP4) Pannexin-2 28 9.4
11PHLC_CLOBI (P20419) Phospholipase C precursor (EC 3.1.4.3) (PLC)... 28 9.4
12PANX2_HUMAN (Q96RD6) Pannexin-2 28 9.4
13Y1135_THETN (Q8RAR7) UPF0082 protein TTE1135 28 9.4
14PHLC_CLOSO (Q8VUZ6) Phospholipase C precursor (EC 3.1.4.3) (PLC)... 28 9.4

>LIN12_CAEEL (P14585) Protein lin-12 precursor (Abnormal cell lineage protein 12)|
          Length = 1429

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 11   IIITCAKLEGGTPRNRSILRVRIQESSIQN--RNKKYHKSMDSLQHNIITEVWDN*IFHS 184
            +++    L G   R R ++   +    ++N  +N+K H+S+ S QH+++   +D  I   
Sbjct: 922  VVLMLGALPGNRTRKRRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQ 981

Query: 185  KHAEQ 199
            ++  Q
Sbjct: 982  RNELQ 986



to top

>HEMA_PTV10 (Q70KP1) Hemagglutinin-esterase homolog precursor (EC 3.1.1.53)|
           (HE)
          Length = 430

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 233 LVLFGSICDHST--VLRVWNGIFSCPKLLLLYCAADYPCF-YGTFCCDFGY 90
           LV+F S+   ST  VL   +  FSC K L+ +C  D  CF     C  FGY
Sbjct: 183 LVIFNSVVKVSTQFVLPSSSDGFSCTKHLVPFCYIDGGCFEMSGVCYPFGY 233



to top

>PHLC_CLOHA (P59026) Phospholipase C precursor (EC 3.1.4.3) (PLC)|
           (Phosphatidylcholine cholinephosphohydrolase) (Beta
           toxin)
          Length = 399

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 242 WRRTGAKQLTELLNLGLHLRGEMQPPYLP*NL 337
           W++   +Q T LL  GLH  G+   PY P N+
Sbjct: 136 WKKGNYEQATWLLGQGLHYFGDFHTPYHPSNV 167



to top

>CARD9_RAT (Q9EPY0) Caspase recruitment domain-containing protein 9 (rCARD9)|
          Length = 536

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +2

Query: 50  RNRSILRVRIQESSIQNRNKKYHKSMDSLQHNIITEVWDN*IFHSKHAEQLSG----RK* 217
           + R +L+ R+QE  +  +  K H++   +Q  ++ E W   +   +H EQ S     RK 
Sbjct: 252 QERDLLQARVQELEVSVQEGKLHRNSPYIQ--VLEEDWRQAL--QEHQEQASTIFSLRKD 307

Query: 218 IQTALAATWRRTGAKQLTELLNLGLHLRGEM 310
           ++ A A   R    K++ EL  L L    +M
Sbjct: 308 LRQAEALRTRCMEEKEMFELQCLALRKDAKM 338



to top

>ALG14_YARLI (Q6CF02) UDP-N-acetylglucosamine transferase subunit ALG14 (EC|
           2.4.1.-) (Asparagine linked glycosylation protein 14)
          Length = 216

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -2

Query: 175 YLVVPNFCYYIVLQTIHAFMVLFVAILDTRFLYSDS----KDASISGRAAFQFC 26
           +++V N     V+    AF++ F+A++DTR +Y +S       S+SG     FC
Sbjct: 139 HVIVCNGPATCVMLCYAAFLLRFMALIDTRIIYVESLARVNRLSLSGLILLPFC 192



to top

>CMB2_DIACA (Q42498) MADS-box protein CMB2|
          Length = 214

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 32  LEGGTPRNRSILRVRIQESSIQNRNKKYH 118
           LEG T    S L+  ++E+ IQ RNKKYH
Sbjct: 113 LEGLTLVELSALQQEMEEAIIQIRNKKYH 141



to top

>FAS1_YARLI (P34229) Fatty acid synthase beta subunit (EC 2.3.1.86) [Includes:|
           3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
           (EC 4.2.1.61); Enoyl-[acyl-carrier-protein] reductase
           [NADH] (EC 1.3.1.9); [Acyl-carrier-protein]
           acetyltransferase (EC 2.
          Length = 2086

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
 Frame = -1

Query: 314 VAFPPSSA-TLSSVVQLVALPPSFARLLLVLFG------SICD-HSTVLRVWNGIFSCPK 159
           +AF P S   +SSV+++    P F  +L    G      S  D H+ +L++++ I  C  
Sbjct: 714 IAFKPGSIEAISSVIRIAKANPDFPIILQWTGGRGGGHHSFEDFHAPILQMYSKIRRCSN 773

Query: 158 LLLLYCAA------DYPCFYGTFCCDFGY 90
           ++L+  +        YP   G++  DF Y
Sbjct: 774 IVLIAGSGFGASTDSYPYLTGSWSRDFDY 802



to top

>VG6_SPV4 (P11338) Gene 6 protein|
          Length = 71

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 30  NWKAARPEIEASLESEYRNRVSKIATKSTIKAWIVCSTI 146
           NW   +  +E  +E  YR    K+  KS  K  IVC  I
Sbjct: 29  NWLTNQLALEKEIEQGYRCETCKLVIKSVNKDEIVCKCI 67



to top

>PANX2_RAT (P60571) Pannexin-2|
          Length = 664

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 277 TELRVALEGGNATTLPTLKSHRMLNYVTGALTPISIEVAL 396
           TELR AL G +A+  P+L  H+ L Y   A   I    AL
Sbjct: 91  TELRDALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPAL 130



to top

>PANX2_MOUSE (Q6IMP4) Pannexin-2|
          Length = 607

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 277 TELRVALEGGNATTLPTLKSHRMLNYVTGALTPISIEVAL 396
           TELR AL G +A+  P+L  H+ L Y   A   I    AL
Sbjct: 91  TELRDALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPAL 130



to top

>PHLC_CLOBI (P20419) Phospholipase C precursor (EC 3.1.4.3) (PLC)|
           (Phosphatidylcholine cholinephosphohydrolase) (Cbp)
          Length = 398

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 242 WRRTGAKQLTELLNLGLHLRGEMQPPY 322
           W +   K+ T LL  GLH  G++  PY
Sbjct: 135 WEKGNFKEATFLLGQGLHYLGDLNTPY 161



to top

>PANX2_HUMAN (Q96RD6) Pannexin-2|
          Length = 633

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 277 TELRVALEGGNATTLPTLKSHRMLNYVTGALTPISIEVAL 396
           TELR AL G +A+  P+L  H+ L Y   A   I    AL
Sbjct: 91  TELRDALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPAL 130



to top

>Y1135_THETN (Q8RAR7) UPF0082 protein TTE1135|
          Length = 243

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 244 AKDGGKATN*TTELRVALEGGNATTLPTLKSHRMLNYVTGALTPISI-EVALHGY 405
           AK+GG      ++L++A+E   A  LP+    R +   TG L    + EV   GY
Sbjct: 36  AKEGGGDPETNSKLKLAIERAKAFNLPSENIQRAIKRGTGELGGAKLEEVIYEGY 90



to top

>PHLC_CLOSO (Q8VUZ6) Phospholipase C precursor (EC 3.1.4.3) (PLC)|
           (Phosphatidylcholine cholinephosphohydrolase)
          Length = 399

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 242 WRRTGAKQLTELLNLGLHLRGEMQPPY 322
           W++   K+ T LL  G+H  G++  PY
Sbjct: 137 WKKGNYKEATFLLGQGMHYLGDLNTPY 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,761,066
Number of Sequences: 219361
Number of extensions: 1180307
Number of successful extensions: 3528
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3528
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top