ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33e10 |
|---|---|
| Clone Library Name | barley_pub |
>FXL19_MOUSE (Q6PB97) F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat| protein 19) Length = 674 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 244 AISLLTANLNPQPMAIFELSRIGTHKS*PLCLPHYRRTPLLK 369 ++ LLTA +P + L+ G H+ CLP +RR P L+ Sbjct: 594 SVHLLTAPTSPLRETLVHLNLAGCHRLTDHCLPLFRRCPRLR 635
>FXL19_HUMAN (Q6PCT2) F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat| protein 19) Length = 674 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 244 AISLLTANLNPQPMAIFELSRIGTHKS*PLCLPHYRRTPLLK 369 ++ LLTA +P + L+ G H+ CLP +RR P L+ Sbjct: 594 SVHLLTAPTSPLRETLVHLNLAGCHRLTDHCLPLFRRCPRLR 635
>DBP4_CANGA (Q6FPT7) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-)| Length = 765 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = +1 Query: 13 AISTVMNICLVTVHK*GTLQTMED--MHPRNLSQSTHESITL*LVETMHIFLVGMIFTLR 186 +IS + + L K GT+ + ED P+ L QS + ++ ++ F+ + T Sbjct: 231 SISDLARLSLTDYKKIGTIDSSEDGPATPKTLQQSYIIADLADKLDVLYSFIKSHLKTKM 290 Query: 187 TIFFSSSARKH 219 +FFSSS + H Sbjct: 291 IVFFSSSKQVH 301
>GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Paragranulin; Granulin-1 (Granulin G); Granulin-2 (Granulin F); Granulin-3 (Granulin B); Granulin-4 (Granulin A); Granulin-5 (Granulin C); Granulin-6 (Granulin D); Granul Length = 593 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = -3 Query: 361 EGSFCSVE---DRGVMTYECLSGLIQKWPSAVGLNL 263 +G FC V D G +Y C L+ KWP+ + +L Sbjct: 22 DGQFCPVACCLDPGGASYSCCRPLLDKWPTTLSRHL 57
>OXAA_XYLFT (Q879S3) Inner membrane protein oxaA| Length = 565 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -3 Query: 331 GVMTYECLSGLIQKWPSAVGLNLQSGEKLLR*WQMRKNVSLQRKRKR 191 GVM SGL W GLNL L++ W +R++ RKR R Sbjct: 520 GVMMAFVPSGLALYWVINGGLNL-----LIQWWMIRQHADFSRKRSR 561
>OXAA_XYLFA (Q9P9U1) Inner membrane protein oxaA| Length = 565 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -3 Query: 331 GVMTYECLSGLIQKWPSAVGLNLQSGEKLLR*WQMRKNVSLQRKRKR 191 GVM SGL W GLNL L++ W +R++ RKR R Sbjct: 520 GVMMAFVPSGLALYWVINGGLNL-----LIQWWMIRQHADFSRKRSR 561
>RNS2_PYRPY (Q40965) Ribonuclease S-2 precursor (EC 3.1.27.1) (S2-RNase)| Length = 221 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +1 Query: 154 IFLVGMIFTLRTIFFSSSARKHSYAFAISAAISLLTANLNPQP 282 I++ M+F+L + SSSA ++ Y F + N NP P Sbjct: 2 IYIFTMVFSLNVLILSSSAARYDY-FQFTQQYQQAFCNSNPTP 43
>XTH6_ARATH (Q8LF99) Probable xyloglucan endotransglucosylase/hydrolase protein| 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) Length = 292 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 185 RSVNIIPTRKICMVSTNHSVIDSCVDCERF 96 +S+N + R+ V NH V D C D RF Sbjct: 254 QSLNAVEARRYRWVRVNHMVYDYCTDRSRF 283
>MTR1A_SHEEP (P48040) Melatonin receptor type 1A (Mel-1A-R) (Mel1a melatonin| receptor) Length = 366 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/59 (22%), Positives = 30/59 (50%) Frame = +1 Query: 136 LVETMHIFLVGMIFTLRTIFFSSSARKHSYAFAISAAISLLTANLNPQPMAIFELSRIG 312 L+ T+ + +VG + + +++ + R F +S A++ L + P P+A+ + G Sbjct: 50 LIFTIVVDIVGNLLVVLSVYRNKKLRNAGNVFVVSLAVADLLVAVYPYPLALASIVNNG 108
>GLK_SALTY (Q93IM5) Glucokinase (EC 2.7.1.2) (Glucose kinase)| Length = 321 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = -2 Query: 197 KKMVRSVNIIPTRKICMVSTNHSVIDSCVDCERFLGCISSIV*RVPYLCTVTKQIFITVD 18 + +V+S N +P T ++ DSC+DC R L I+ R +T F V Sbjct: 200 RAIVKSDNRLPENLRPKDITERALADSCIDCRRALSLFCVIMGRFGGDLALTMGTFGGVY 259 Query: 17 IAFG 6 IA G Sbjct: 260 IAGG 263
>GLK_SALTI (P58618) Glucokinase (EC 2.7.1.2) (Glucose kinase)| Length = 321 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = -2 Query: 197 KKMVRSVNIIPTRKICMVSTNHSVIDSCVDCERFLGCISSIV*RVPYLCTVTKQIFITVD 18 + +V+S N +P T ++ DSC+DC R L I+ R +T F V Sbjct: 200 RAIVKSDNRLPENLRPKDITERALADSCIDCRRALSLFCVIMGRFGGDLALTMGTFGGVY 259 Query: 17 IAFG 6 IA G Sbjct: 260 IAGG 263
>MOK_MOUSE (Q9WVS4) MAPK/MAK/MRK overlapping kinase (EC 2.7.11.22) (MOK| protein kinase) Length = 420 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 187 TIFFSSSARKHSYAFAISAAISLLTANLNPQPMAI 291 T F S A + F + I LLTANL+PQ +++ Sbjct: 227 TKFKQSRAMSFDFPFKKGSGIPLLTANLSPQCLSL 261
>XTH22_ARATH (Q38857) Xyloglucan endotransglucosylase/hydrolase protein 22| precursor (EC 2.4.1.207) (At-XTH22) (XTH-22) (Touch protein 4) Length = 284 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +3 Query: 87 ASQEPFTINT*IYHAMIGRNHAYFSRWNDIHTTYHLFLFL 206 +S EP+T++T +Y G F W D +H + L Sbjct: 106 SSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTIL 145
>LDLR_RABIT (P20063) Low-density lipoprotein receptor (LDL receptor) (Fragment)| Length = 837 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = -1 Query: 264 CSQERNCCADGKCV-RMFPCRG 202 CSQ+ CA+G C+ R+F C G Sbjct: 96 CSQDEFRCAEGACISRLFACDG 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,453,971 Number of Sequences: 219361 Number of extensions: 1194626 Number of successful extensions: 2839 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2764 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2839 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
