Clone Name | rbastl33e10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 328 cccctctgtcttccacactacagaaggacccctcttctcaagtt 371 |||||||||| |||| |||||||| ||||||||||||| ||||| Sbjct: 28343993 cccctctgtcctccagactacagagggacccctcttctgaagtt 28343950
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 328 cccctctgtcttccacactacagaaggacccctcttctcaagtt 371 |||||||||| |||| |||||||| ||||||||||||| ||||| Sbjct: 59093 cccctctgtcctccagactacagagggacccctcttctgaagtt 59050
>dbj|AK122113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127O15, full insert sequence Length = 3158 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 328 cccctctgtcttccacactacagaaggacccctcttctcaagtt 371 |||||||||| |||| |||||||| ||||||||||||| ||||| Sbjct: 3009 cccctctgtcctccagactacagagggacccctcttctgaagtt 2966
>dbj|AK064954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A04, full insert sequence Length = 2892 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 328 cccctctgtcttccacactacagaaggacccctcttctcaagtt 371 |||||||||| |||| |||||||| ||||||||||||| ||||| Sbjct: 2777 cccctctgtcctccagactacagagggacccctcttctgaagtt 2734
>emb|CT009689.5| Pig DNA sequence from clone CH242-266P8 on chromosome 17, complete sequence Length = 38080 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 179 cactacgtaccatctttttctct 201 ||||||||||||||||||||||| Sbjct: 23691 cactacgtaccatctttttctct 23669
>emb|AL354951.7| Human DNA sequence from clone RP11-451M19 on chromosome 10 Contains a ribosomal protein L21 (RPL21) pseudogene, the XPNPEP1 gene for X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (SAMP, XPNPEP, XPNPEPL), a novel gene and one CpG island, complete sequence Length = 205329 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 tttcacaatcaacacatgaat 121 ||||||||||||||||||||| Sbjct: 147139 tttcacaatcaacacatgaat 147119
>gb|AC169503.1| Mus musculus BAC clone RP24-281B5 from chromosome 12, complete sequence Length = 163008 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 caaatgcaatatccacagtt 27 |||||||||||||||||||| Sbjct: 62840 caaatgcaatatccacagtt 62821
>emb|AL591421.8| Human DNA sequence from clone RP11-394N20 on chromosome X, complete sequence Length = 50321 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atgcaatatccacagttatg 30 |||||||||||||||||||| Sbjct: 43072 atgcaatatccacagttatg 43091
>emb|AL161442.22| Human DNA sequence from clone RP6-102F8 on chromosome Xq25-26.3 Contains the 5' end of variants of the MBNL3 gene for muscleblind-like 3 (Drosophila) and a CpG island, complete sequence Length = 112453 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tctttttctcttcctctgca 210 |||||||||||||||||||| Sbjct: 54091 tctttttctcttcctctgca 54110
>emb|AL645611.9| Mouse DNA sequence from clone RP23-432O24 on chromosome 11 Contains part of the Adamts2 gene for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif 2, complete sequence Length = 69492 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tacgtaccatctttttctct 201 |||||||||||||||||||| Sbjct: 62029 tacgtaccatctttttctct 62048
>gb|AF468050.1| Danio rerio laminin beta 4 (lamb4) mRNA, complete cds Length = 5943 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 aagtcataacccctctgtct 338 |||||||||||||||||||| Sbjct: 1891 aagtcataacccctctgtct 1872
>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence Length = 157430 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cagcaatttctctcctgact 261 |||||||||||||||||||| Sbjct: 19903 cagcaatttctctcctgact 19884
>emb|BX548078.8| Zebrafish DNA sequence from clone CH211-212C13 in linkage group 15, complete sequence Length = 205316 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 tctttttctcttcctctgcaaggaaaca 218 |||||| ||||| ||||||||||||||| Sbjct: 201366 tcttttgctctttctctgcaaggaaaca 201339
>gb|AC035140.7| Homo sapiens chromosome 5 clone CTD-2631K10, complete sequence Length = 61965 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tctttttctcttcctctgca 210 |||||||||||||||||||| Sbjct: 33667 tctttttctcttcctctgca 33686
>gb|AC000079.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 49c12 In DGCR Region, complete sequence Length = 39540 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cagcaatttctctcctgact 261 |||||||||||||||||||| Sbjct: 30948 cagcaatttctctcctgact 30929
>gb|AC000068.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 102g9 In DGCR Region, complete sequence Length = 43934 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cagcaatttctctcctgact 261 |||||||||||||||||||| Sbjct: 6599 cagcaatttctctcctgact 6580
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gaaaccatgcatatttttct 161 |||||||||||||||||||| Sbjct: 15324313 gaaaccatgcatatttttct 15324294
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ttttctcttcctctgcaagg 213 |||||||||||||||||||| Sbjct: 933971 ttttctcttcctctgcaagg 933990
>ref|NM_173276.1| Danio rerio laminin, beta 4 (lamb4), mRNA Length = 5943 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 aagtcataacccctctgtct 338 |||||||||||||||||||| Sbjct: 1891 aagtcataacccctctgtct 1872
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gaaaccatgcatatttttct 161 |||||||||||||||||||| Sbjct: 31312 gaaaccatgcatatttttct 31293
>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0475E07 Length = 139961 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gaaaccatgcatatttttct 161 |||||||||||||||||||| Sbjct: 110326 gaaaccatgcatatttttct 110307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,036,927 Number of Sequences: 3902068 Number of extensions: 4036927 Number of successful extensions: 77825 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77744 Number of HSP's gapped (non-prelim): 81 length of query: 375 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 353 effective length of database: 17,147,199,772 effective search space: 6052961519516 effective search space used: 6052961519516 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)