Clone Name | rbastl33e07 |
---|---|
Clone Library Name | barley_pub |
>emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-shock protein Length = 2654 Score = 389 bits (196), Expect = e-105 Identities = 240/254 (94%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 2 aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2468 aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 2409 Query: 62 ttcggatggctcaacaacctccgttacaacggcttcagaagagtc---gttgacattggt 118 |||||||||||||| ||||||| |||||| ||||||||||||| || ||||||||| Sbjct: 2408 ttcggatggctcaatgacctccggtacaacaccttcagaagagtcaccgtcgacattggt 2349 Query: 119 ctcagcctcctcggtgccggatctaccccatctcccgccaagggcgatggtcatcatctc 178 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2348 ctcagcctcctcggcgccggatctaccccatctcccgccaagggcgatggtcatcatctc 2289 Query: 179 gtagatcttgccccccaactccgctggactctcaggtgtgtatccactggagatcagggc 238 |||||||||||||||||||||||||||||||||||| || || || |||||||||||||| Sbjct: 2288 gtagatcttgccccccaactccgctggactctcaggagtataaccgctggagatcagggc 2229 Query: 239 agtctcgtacagca 252 |||||||||||||| Sbjct: 2228 agtctcgtacagca 2215
>dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068G01, full insert sequence Length = 2890 Score = 147 bits (74), Expect = 2e-32 Identities = 98/106 (92%) Strand = Plus / Minus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 2458 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 2399 Query: 204 ggactctcaggtgtgtatccactggagatcagggcagtctcgtaca 249 || || ||||| || ||||||||||||||||| ||||||||||||| Sbjct: 2398 gggctgtcaggagtatatccactggagatcagcgcagtctcgtaca 2353
>ref|XM_483065.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2702 Score = 123 bits (62), Expect = 3e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296 Query: 204 ggactctcaggtgtgtatccactggagatcagggcagtctcgtaca 249 ||||| ||||| || ||||||||||||||||| |||||||| |||| Sbjct: 2295 ggactgtcaggagtatatccactggagatcagagcagtctcataca 2250
>dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K17, full insert sequence Length = 2702 Score = 123 bits (62), Expect = 3e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296 Query: 204 ggactctcaggtgtgtatccactggagatcagggcagtctcgtaca 249 ||||| ||||| || ||||||||||||||||| |||||||| |||| Sbjct: 2295 ggactgtcaggagtatatccactggagatcagagcagtctcataca 2250
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 101 bits (51), Expect = 1e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 18096426 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 18096485 Query: 204 ggactctcagg 214 || || ||||| Sbjct: 18096486 gggctgtcagg 18096496 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 219 tatccactggagatcagggcagtctcgtaca 249 ||||||||||||||||| ||||||||||||| Sbjct: 18096590 tatccactggagatcagcgcagtctcgtaca 18096620
>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08 Length = 155316 Score = 101 bits (51), Expect = 1e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 89548 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 89607 Query: 204 ggactctcagg 214 || || ||||| Sbjct: 89608 gggctgtcagg 89618 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 219 tatccactggagatcagggcagtctcgtaca 249 ||||||||||||||||| ||||||||||||| Sbjct: 89712 tatccactggagatcagcgcagtctcgtaca 89742
>gb|AY106328.1| Zea mays PCO125641 mRNA sequence Length = 1769 Score = 101 bits (51), Expect = 1e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 |||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 1565 ccccatctcccgccgagggccatggtcatcatctcgtagatcttgcctcccagctccgct 1506 Query: 204 ggactctcagg 214 ||||| ||||| Sbjct: 1505 ggactgtcagg 1495 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 222 ccactggagatcagggcagtctcgtacagcaa 253 |||||||||||||| |||| |||||| ||||| Sbjct: 1405 ccactggagatcagcgcagcctcgtatagcaa 1374
>gb|AY104129.1| Zea mays PCO085355 mRNA sequence Length = 1075 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 |||||||||||||| ||||| || | ||||||||| ||||||||||| |||||||||||| Sbjct: 791 ccccatctcccgccgagggcaatcgccatcatctcatagatcttgccacccaactccgct 732 Query: 204 ggactctcaggtgtgtatccactggagat 232 |||||||| || || |||||||| ||||| Sbjct: 731 ggactctccggagtatatccactcgagat 703
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 85.7 bits (43), Expect = 6e-14 Identities = 64/71 (90%) Strand = Plus / Plus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 24117967 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 24118026 Query: 204 ggactctcagg 214 ||||| ||||| Sbjct: 24118027 ggactgtcagg 24118037 Score = 46.1 bits (23), Expect = 0.053 Identities = 29/31 (93%) Strand = Plus / Plus Query: 219 tatccactggagatcagggcagtctcgtaca 249 ||||||||||||||||| |||||||| |||| Sbjct: 24118126 tatccactggagatcagagcagtctcataca 24118156
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 85.7 bits (43), Expect = 6e-14 Identities = 64/71 (90%) Strand = Plus / Plus Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203 |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 71453 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 71512 Query: 204 ggactctcagg 214 ||||| ||||| Sbjct: 71513 ggactgtcagg 71523 Score = 46.1 bits (23), Expect = 0.053 Identities = 29/31 (93%) Strand = Plus / Plus Query: 219 tatccactggagatcagggcagtctcgtaca 249 ||||||||||||||||| |||||||| |||| Sbjct: 71612 tatccactggagatcagagcagtctcataca 71642
>gb|AF254880.1|AF254880 Spodoptera frugiperda 90-kDa heat shock protein HSP83 (hsp83) mRNA, complete cds Length = 2470 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cagggcagtctcgtacagca 252 |||||||||||||||||||| Sbjct: 2141 cagggcagtctcgtacagca 2122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,879,816 Number of Sequences: 3902068 Number of extensions: 1879816 Number of successful extensions: 26957 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26925 Number of HSP's gapped (non-prelim): 31 length of query: 253 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 231 effective length of database: 17,147,199,772 effective search space: 3961003147332 effective search space used: 3961003147332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)