ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-... 389 e-105
2dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 2e-32
3ref|XM_483065.1| Oryza sativa (japonica cultivar-group), mRNA 123 3e-25
4dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 3e-25
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
6dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
7gb|AY106328.1| Zea mays PCO125641 mRNA sequence 101 1e-18
8gb|AY104129.1| Zea mays PCO085355 mRNA sequence 98 2e-17
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 86 6e-14
10dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 86 6e-14
11gb|AF254880.1|AF254880 Spodoptera frugiperda 90-kDa heat shock p... 40 3.3

>emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-shock protein
          Length = 2654

 Score =  389 bits (196), Expect = e-105
 Identities = 240/254 (94%), Gaps = 3/254 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2    aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 2409

                                                                        
Query: 62   ttcggatggctcaacaacctccgttacaacggcttcagaagagtc---gttgacattggt 118
            ||||||||||||||  ||||||| ||||||  |||||||||||||   || |||||||||
Sbjct: 2408 ttcggatggctcaatgacctccggtacaacaccttcagaagagtcaccgtcgacattggt 2349

                                                                        
Query: 119  ctcagcctcctcggtgccggatctaccccatctcccgccaagggcgatggtcatcatctc 178
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2348 ctcagcctcctcggcgccggatctaccccatctcccgccaagggcgatggtcatcatctc 2289

                                                                        
Query: 179  gtagatcttgccccccaactccgctggactctcaggtgtgtatccactggagatcagggc 238
            |||||||||||||||||||||||||||||||||||| || || || ||||||||||||||
Sbjct: 2288 gtagatcttgccccccaactccgctggactctcaggagtataaccgctggagatcagggc 2229

                          
Query: 239  agtctcgtacagca 252
            ||||||||||||||
Sbjct: 2228 agtctcgtacagca 2215



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>dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068G01, full
            insert sequence
          Length = 2890

 Score =  147 bits (74), Expect = 2e-32
 Identities = 98/106 (92%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 2458 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 2399

                                                          
Query: 204  ggactctcaggtgtgtatccactggagatcagggcagtctcgtaca 249
            || || ||||| || ||||||||||||||||| |||||||||||||
Sbjct: 2398 gggctgtcaggagtatatccactggagatcagcgcagtctcgtaca 2353



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>ref|XM_483065.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2702

 Score =  123 bits (62), Expect = 3e-25
 Identities = 95/106 (89%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296

                                                          
Query: 204  ggactctcaggtgtgtatccactggagatcagggcagtctcgtaca 249
            ||||| ||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 2295 ggactgtcaggagtatatccactggagatcagagcagtctcataca 2250



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>dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K17, full
            insert sequence
          Length = 2702

 Score =  123 bits (62), Expect = 3e-25
 Identities = 95/106 (89%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296

                                                          
Query: 204  ggactctcaggtgtgtatccactggagatcagggcagtctcgtaca 249
            ||||| ||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 2295 ggactgtcaggagtatatccactggagatcagagcagtctcataca 2250



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  101 bits (51), Expect = 1e-18
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                            
Query: 144      ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
                ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 18096426 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 18096485

                           
Query: 204      ggactctcagg 214
                || || |||||
Sbjct: 18096486 gggctgtcagg 18096496



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 219      tatccactggagatcagggcagtctcgtaca 249
                ||||||||||||||||| |||||||||||||
Sbjct: 18096590 tatccactggagatcagcgcagtctcgtaca 18096620



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>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0026C08
          Length = 155316

 Score =  101 bits (51), Expect = 1e-18
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                         
Query: 144   ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
             ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 89548 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 89607

                        
Query: 204   ggactctcagg 214
             || || |||||
Sbjct: 89608 gggctgtcagg 89618



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 219   tatccactggagatcagggcagtctcgtaca 249
             ||||||||||||||||| |||||||||||||
Sbjct: 89712 tatccactggagatcagcgcagtctcgtaca 89742



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>gb|AY106328.1| Zea mays PCO125641 mRNA sequence
          Length = 1769

 Score =  101 bits (51), Expect = 1e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            |||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct: 1565 ccccatctcccgccgagggccatggtcatcatctcgtagatcttgcctcccagctccgct 1506

                       
Query: 204  ggactctcagg 214
            ||||| |||||
Sbjct: 1505 ggactgtcagg 1495



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 222  ccactggagatcagggcagtctcgtacagcaa 253
            |||||||||||||| |||| |||||| |||||
Sbjct: 1405 ccactggagatcagcgcagcctcgtatagcaa 1374



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>gb|AY104129.1| Zea mays PCO085355 mRNA sequence
          Length = 1075

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                       
Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
           |||||||||||||| ||||| || | ||||||||| ||||||||||| ||||||||||||
Sbjct: 791 ccccatctcccgccgagggcaatcgccatcatctcatagatcttgccacccaactccgct 732

                                        
Query: 204 ggactctcaggtgtgtatccactggagat 232
           |||||||| || || |||||||| |||||
Sbjct: 731 ggactctccggagtatatccactcgagat 703



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 144      ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
                |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 24117967 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 24118026

                           
Query: 204      ggactctcagg 214
                ||||| |||||
Sbjct: 24118027 ggactgtcagg 24118037



 Score = 46.1 bits (23), Expect = 0.053
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 219      tatccactggagatcagggcagtctcgtaca 249
                ||||||||||||||||| |||||||| ||||
Sbjct: 24118126 tatccactggagatcagagcagtctcataca 24118156



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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 144   ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
             |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 71453 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 71512

                        
Query: 204   ggactctcagg 214
             ||||| |||||
Sbjct: 71513 ggactgtcagg 71523



 Score = 46.1 bits (23), Expect = 0.053
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 219   tatccactggagatcagggcagtctcgtaca 249
             ||||||||||||||||| |||||||| ||||
Sbjct: 71612 tatccactggagatcagagcagtctcataca 71642



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>gb|AF254880.1|AF254880 Spodoptera frugiperda 90-kDa heat shock protein HSP83 (hsp83) mRNA,
            complete cds
          Length = 2470

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  cagggcagtctcgtacagca 252
            ||||||||||||||||||||
Sbjct: 2141 cagggcagtctcgtacagca 2122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,879,816
Number of Sequences: 3902068
Number of extensions: 1879816
Number of successful extensions: 26957
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26925
Number of HSP's gapped (non-prelim): 31
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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