ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
2dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
3emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 78 2e-11
4emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in ... 46 0.083
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
7dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
9emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.3
10ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (... 40 5.1
11emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 i... 40 5.1
12gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complet... 40 5.1
13gb|AC155236.2| Mus musculus BAC clone RP24-427K17 from chromosom... 40 5.1
14dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
15gb|AE015927.1| Clostridium tetani E88, complete genome 40 5.1
16emb|AL845354.13| Mouse DNA sequence from clone RP23-318L10 on ch... 40 5.1
17gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 5.1 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 328      cgacataagctgtttgccctggcagtattgtccaagtcatcagccaaaaataaga 382
                |||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||
Sbjct: 19143384 cgacataagctgcttgccctggtagagttgtccaagtcatcagccaaaaataaga 19143330
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>dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full
            insert sequence
          Length = 2337

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                   
Query: 328  cgacataagctgtttgccctggcagtattgtccaagtcatcagccaaaaataaga 382
            |||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||
Sbjct: 1956 cgacataagctgcttgccctggtagagttgtccaagtcatcagccaaaaataaga 1902
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 328   cgacataagctgtttgccctggcagtattgtccaagtcatcagccaaaaataaga 382
             |||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||
Sbjct: 76904 cgacataagctgcttgccctggtagagttgtccaagtcatcagccaaaaataaga 76850
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>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24,
             complete sequence
          Length = 166302

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 69    taaatttggtacattaataattt 91
             |||||||||||||||||||||||
Sbjct: 51137 taaatttggtacattaataattt 51115
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 35       tcgttttaaattaaaggaaat 55
                |||||||||||||||||||||
Sbjct: 15407111 tcgttttaaattaaaggaaat 15407091
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 35       tcgttttaaattaaaggaaat 55
                |||||||||||||||||||||
Sbjct: 13202162 tcgttttaaattaaaggaaat 13202142



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 35       tcgttttaaattaaaggaaa 54
                ||||||||||||||||||||
Sbjct: 16742011 tcgttttaaattaaaggaaa 16742030



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 35       tcgttttaaattaaaggaaa 54
                ||||||||||||||||||||
Sbjct: 16735853 tcgttttaaattaaaggaaa 16735834
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>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 35     tcgttttaaattaaaggaaat 55
              |||||||||||||||||||||
Sbjct: 119350 tcgttttaaattaaaggaaat 119330
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 35       tcgttttaaattaaaggaaat 55
                |||||||||||||||||||||
Sbjct: 15361394 tcgttttaaattaaaggaaat 15361374
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>emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb0066P16 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126680

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    tcgttttaaattaaaggaaat 55
             |||||||||||||||||||||
Sbjct: 95376 tcgttttaaattaaaggaaat 95396
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>ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (DDB0185622), partial
           mRNA
          Length = 882

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  catcttaggtaaatttggta 79
           ||||||||||||||||||||
Sbjct: 792 catcttaggtaaatttggta 811
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>emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 in linkage group 5,
              complete sequence
          Length = 123661

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    tcccccctcaaacttgatgg 140
              ||||||||||||||||||||
Sbjct: 102925 tcccccctcaaacttgatgg 102906
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>gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complete sequence
          Length = 105489

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   tgttaaaaatgcctaaaaat 310
             ||||||||||||||||||||
Sbjct: 32339 tgttaaaaatgcctaaaaat 32358
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>gb|AC155236.2| Mus musculus BAC clone RP24-427K17 from chromosome 12, complete
             sequence
          Length = 126917

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    tttaaattaaaggaaataca 58
             ||||||||||||||||||||
Sbjct: 64919 tttaaattaaaggaaataca 64900
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>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0664F03
          Length = 184242

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcgttttaaattaaaggaaa 54
             ||||||||||||||||||||
Sbjct: 93498 tcgttttaaattaaaggaaa 93517



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcgttttaaattaaaggaaa 54
             ||||||||||||||||||||
Sbjct: 87340 tcgttttaaattaaaggaaa 87321
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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 38      ttttaaattaaaggaaatac 57
               ||||||||||||||||||||
Sbjct: 1831528 ttttaaattaaaggaaatac 1831547
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>emb|AL845354.13| Mouse DNA sequence from clone RP23-318L10 on chromosome 2, complete
             sequence
          Length = 178468

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   aaaattaacagtcaaaagtc 325
             ||||||||||||||||||||
Sbjct: 71053 aaaattaacagtcaaaagtc 71034
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    taaaaattaacagtcaaaag 323
              ||||||||||||||||||||
Sbjct: 432910 taaaaattaacagtcaaaag 432891


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,502,727
Number of Sequences: 3902068
Number of extensions: 3502727
Number of successful extensions: 62605
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62482
Number of HSP's gapped (non-prelim): 123
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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