Clone Name | rbastl33e03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3534 Score = 111 bits (56), Expect = 2e-21 Identities = 137/164 (83%) Strand = Plus / Minus Query: 219 ctcatgtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccatt 278 |||||||||||||| |||||| | | |||||||||| | ||||||| || ||||||||| Sbjct: 3083 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 3024 Query: 279 ttctgagacagggcatgctgtaacttttggacttcatccctctttttccttagcttttcg 338 ||||| ||||| || || || | |||||| | ||| || ||||||||||| |||||||| Sbjct: 3023 ttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctcagcttttca 2964 Query: 339 agctccacttccgcatttagagccccttgaagctgaaggtatac 382 ||||| ||||| ||||| ||||| ||||| || ||||||||||| Sbjct: 2963 agctcaacttctgcattgagagctccttggagttgaaggtatac 2920
>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full insert sequence Length = 3587 Score = 111 bits (56), Expect = 2e-21 Identities = 137/164 (83%) Strand = Plus / Minus Query: 219 ctcatgtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccatt 278 |||||||||||||| |||||| | | |||||||||| | ||||||| || ||||||||| Sbjct: 3295 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 3236 Query: 279 ttctgagacagggcatgctgtaacttttggacttcatccctctttttccttagcttttcg 338 ||||| ||||| || || || | |||||| | ||| || ||||||||||| |||||||| Sbjct: 3235 ttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctcagcttttca 3176 Query: 339 agctccacttccgcatttagagccccttgaagctgaaggtatac 382 ||||| ||||| ||||| ||||| ||||| || ||||||||||| Sbjct: 3175 agctcaacttctgcattgagagctccttggagttgaaggtatac 3132
>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full insert sequence Length = 4411 Score = 107 bits (54), Expect = 3e-20 Identities = 120/142 (84%) Strand = Plus / Minus Query: 246 ggagccttctttctgtaaccggacgcttccattttctgagacagggcatgctgtaacttt 305 |||||||||| | | |||||||| |||||||||||||| || |||||||| || | |||| Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054 Query: 306 tggacttcatccctctttttccttagcttttcgagctccacttccgcatttagagcccct 365 || | ||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 4053 tgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagagctcct 3994 Query: 366 tgaagctgaaggtatacggata 387 || || || |||||||| |||| Sbjct: 3993 tggagttggaggtatacagata 3972
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 6e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| | ||| || |||||||||||||||||||| ||||| ||||| ||||| |||| Sbjct: 651915 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651856 Query: 361 ccccttgaagctgaaggtatacggata 387 | ||||| || || |||||||| |||| Sbjct: 651855 ctccttggagttggaggtatacagata 651829 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 27542546 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27542487 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 27542486 ctccttggagttgaaggtatac 27542465 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 219 ctcatgtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccatt 278 |||||||||||||| |||||| | | |||||||||| | ||||||| || ||||||||| Sbjct: 27542733 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 27542674 Query: 279 ttctgagacag 289 ||||| ||||| Sbjct: 27542673 ttctgtgacag 27542663 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 246 ggagccttctttctgtaaccggacgcttccattttctgagacagggcatg 295 |||||||||| | | |||||||| |||||||||||||| || |||||||| Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025 Score = 46.1 bits (23), Expect = 0.086 Identities = 65/79 (82%) Strand = Plus / Plus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||||| | |||| ||||| |||||||||||||| |||| | || ||||||| | Sbjct: 12395975 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12396034 Query: 361 ccccttgaagctgaaggta 379 | |||||||||| |||||| Sbjct: 12396035 ctccttgaagcttaaggta 12396053
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 6e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| | ||| || |||||||||||||||||||| ||||| ||||| ||||| |||| Sbjct: 651913 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651854 Query: 361 ccccttgaagctgaaggtatacggata 387 | ||||| || || |||||||| |||| Sbjct: 651853 ctccttggagttggaggtatacagata 651827 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 27633869 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27633810 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 27633809 ctccttggagttgaaggtatac 27633788 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 219 ctcatgtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccatt 278 |||||||||||||| |||||| | | |||||||||| | ||||||| || ||||||||| Sbjct: 27634056 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 27633997 Query: 279 ttctgagacag 289 ||||| ||||| Sbjct: 27633996 ttctgtgacag 27633986 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 246 ggagccttctttctgtaaccggacgcttccattttctgagacagggcatg 295 |||||||||| | | |||||||| |||||||||||||| || |||||||| Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023 Score = 46.1 bits (23), Expect = 0.086 Identities = 65/79 (82%) Strand = Plus / Plus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||||| | |||| ||||| |||||||||||||| |||| | || ||||||| | Sbjct: 12392738 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12392797 Query: 361 ccccttgaagctgaaggta 379 | |||||||||| |||||| Sbjct: 12392798 ctccttgaagcttaaggta 12392816
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 69.9 bits (35), Expect = 6e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| | ||| || |||||||||||||||||||| ||||| ||||| ||||| |||| Sbjct: 37796 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 37737 Query: 361 ccccttgaagctgaaggtatacggata 387 | ||||| || || |||||||| |||| Sbjct: 37736 ctccttggagttggaggtatacagata 37710 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 246 ggagccttctttctgtaaccggacgcttccattttctgagacagggcatg 295 |||||||||| | | |||||||| |||||||||||||| || |||||||| Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 20228 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 20287 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 20288 ctccttggagttgaaggtatac 20309 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 219 ctcatgtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccatt 278 |||||||||||||| |||||| | | |||||||||| | ||||||| || ||||||||| Sbjct: 20041 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 20100 Query: 279 ttctgagacag 289 ||||| ||||| Sbjct: 20101 ttctgtgacag 20111
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 7968 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 8027 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 8028 ctccttggagttgaaggtatac 8049 Score = 61.9 bits (31), Expect = 1e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 219 ctcatgtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccatt 278 |||||||||||||| |||||| | | |||||||||| | ||||||| || ||||||||| Sbjct: 7781 ctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaagcttccatt 7840 Query: 279 ttctgagacag 289 ||||| ||||| Sbjct: 7841 ttctgtgacag 7851
>gb|AY109108.1| Zea mays PCO116815 mRNA sequence Length = 1041 Score = 67.9 bits (34), Expect = 2e-08 Identities = 184/234 (78%) Strand = Plus / Minus Query: 164 tttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggggagcttcctcat 223 |||||||||||| |||| ||||||| |||||||| || || |||| |||||||||||| Sbjct: 796 tttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttcctcat 737 Query: 224 gtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccattttctg 283 ||||||||| || || || | |||||||||| | || || || || ||||||||||| Sbjct: 736 gtcctcctcctgtacgctctgtggagccttctcgcgatagccagaggcgtccattttctg 677 Query: 284 agacagggcatgctgtaacttttggacttcatccctctttttccttagcttttcgagctc 343 | ||| |||| ||||| |||||| | ||||| | || ||| |||||||||| | || Sbjct: 676 cgccagtgcattctgtagcttttgaatctcatcttttttcttctttagcttttcacgttc 617 Query: 344 cacttccgcatttagagccccttgaagctgaaggtatacggataggtctttgtt 397 | || ||||||| ||| ||||| ||||||||||| || || | ||||||||| Sbjct: 616 agcgtctgcatttaaagctccttggagctgaaggtacacagacaagtctttgtt 563
>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence Length = 1244 Score = 60.0 bits (30), Expect = 6e-06 Identities = 138/174 (79%) Strand = Plus / Minus Query: 164 tttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggggagcttcctcat 223 |||||||||||| |||| ||||||| ||||| || || || ||||||||||| ||||| Sbjct: 948 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagctttctcat 889 Query: 224 gtcctcctcttggacactggggggagccttctttctgtaaccggacgcttccattttctg 283 ||||||||| || || || | |||||||||| | || || || || ||||||||||| Sbjct: 888 gtcctcctcctgcacgctctgtggagccttctcgcgatacccagaggcgtccattttctg 829 Query: 284 agacagggcatgctgtaacttttggacttcatccctctttttccttagcttttc 337 | ||| |||| |||| |||||| | |||||| | || |||||||||||||| Sbjct: 828 tgccagtgcattttgtagcttttgaatttcatcttttttcttccttagcttttc 775
>ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative valyl tRNA synthetase (OSJNBa0062C05.27), mRNA Length = 3171 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Minus Query: 320 ctttttccttagcttttcgagctccacttccgcatttagagccccttgaagctgaaggta 379 ||||||||||||||| || |||| |||| | |||||||| ||| | ||||| ||||| Sbjct: 2997 ctttttccttagcttctcacgctcagcttcagtgtttagagctcctcgtagctggaggta 2938 Query: 380 tacggataggtctttgtt 397 ||||||||| |||||||| Sbjct: 2937 tacggatagatctttgtt 2920
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Minus Query: 320 ctttttccttagcttttcgagctccacttccgcatttagagccccttgaagctgaaggta 379 ||||||||||||||| || |||| |||| | |||||||| ||| | ||||| ||||| Sbjct: 141517 ctttttccttagcttctcacgctcagcttcagtgtttagagctcctcgtagctggaggta 141458 Query: 380 tacggataggtctttgtt 397 ||||||||| |||||||| Sbjct: 141457 tacggatagatctttgtt 141440
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Minus Query: 320 ctttttccttagcttttcgagctccacttccgcatttagagccccttgaagctgaaggta 379 ||||||||||||||| || |||| |||| | |||||||| ||| | ||||| ||||| Sbjct: 18843781 ctttttccttagcttctcacgctcagcttcagtgtttagagctcctcgtagctggaggta 18843722 Query: 380 tacggataggtctttgtt 397 ||||||||| |||||||| Sbjct: 18843721 tacggatagatctttgtt 18843704
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Minus Query: 320 ctttttccttagcttttcgagctccacttccgcatttagagccccttgaagctgaaggta 379 ||||||||||||||| || |||| |||| | |||||||| ||| | ||||| ||||| Sbjct: 18855035 ctttttccttagcttctcacgctcagcttcagtgtttagagctcctcgtagctggaggta 18854976 Query: 380 tacggataggtctttgtt 397 ||||||||| |||||||| Sbjct: 18854975 tacggatagatctttgtt 18854958
>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full insert sequence Length = 3639 Score = 50.1 bits (25), Expect = 0.006 Identities = 73/89 (82%) Strand = Plus / Minus Query: 291 gcatgctgtaacttttggacttcatccctctttttccttagcttttcgagctccacttcc 350 ||||| |||| |||||||| | |||| ||||| |||||||||||||| |||| | || Sbjct: 3384 gcatggtgtagcttttggattccatctctcttcttccttagcttttcacgctcagcctct 3325 Query: 351 gcatttagagccccttgaagctgaaggta 379 ||||||| || |||||||||| |||||| Sbjct: 3324 gcatttatggctccttgaagcttaaggta 3296
>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence Length = 1082 Score = 50.1 bits (25), Expect = 0.006 Identities = 58/69 (84%) Strand = Plus / Plus Query: 164 tttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggggagcttcctcat 223 |||||||||||| |||| ||||||| ||||| || || || |||| |||||| ||||| Sbjct: 451 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagctttctcat 510 Query: 224 gtcctcctc 232 ||||||||| Sbjct: 511 gtcctcctc 519
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 46.1 bits (23), Expect = 0.086 Identities = 65/79 (82%) Strand = Plus / Plus Query: 301 acttttggacttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||||| | |||| ||||| |||||||||||||| |||| | || ||||||| | Sbjct: 54993 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 55052 Query: 361 ccccttgaagctgaaggta 379 | |||||||||| |||||| Sbjct: 55053 ctccttgaagcttaaggta 55071
>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186915 Score = 46.1 bits (23), Expect = 0.086 Identities = 26/27 (96%) Strand = Plus / Minus Query: 28 tttgaattttctataaatgtgacatca 54 |||||| |||||||||||||||||||| Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188
>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete sequence Length = 121915 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 catttgaattttctataaatgt 47 |||||||||||||||||||||| Sbjct: 75708 catttgaattttctataaatgt 75687
>gb|AC131081.7| Mus musculus chromosome 10, clone RP23-438J1, complete sequence Length = 214060 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 273 tccattttctgagacagggcatgctg 298 ||||||||||||||||||||| |||| Sbjct: 48902 tccattttctgagacagggcacgctg 48927
>gb|AC138108.3| Mus musculus BAC clone RP24-497M9 from chromosome 10, complete sequence Length = 135541 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 273 tccattttctgagacagggcatgctg 298 ||||||||||||||||||||| |||| Sbjct: 70822 tccattttctgagacagggcacgctg 70797
>gb|AC117232.3| Mus musculus BAC clone RP23-405K2 from chromosome 10, complete sequence Length = 204465 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 273 tccattttctgagacagggcatgctg 298 ||||||||||||||||||||| |||| Sbjct: 193644 tccattttctgagacagggcacgctg 193669
>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence Length = 81567 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 atttgaattttctataaatgt 47 ||||||||||||||||||||| Sbjct: 74176 atttgaattttctataaatgt 74196
>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc in-between-RING-finger ubiquitin-associated domain protein) (LOC480259), mRNA Length = 3490 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 cctcaccgatgacccgcagttgctc 199 ||||||||||||| ||||||||||| Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tatcaacttccaaacaaaaat 101 ||||||||||||||||||||| Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tatcaacttccaaacaaaaat 101 ||||||||||||||||||||| Sbjct: 120044 tatcaacttccaaacaaaaat 120064
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tatcaacttccaaacaaaaat 101 ||||||||||||||||||||| Sbjct: 26437 tatcaacttccaaacaaaaat 26457
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete sequence Length = 168158 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 aatgtgacatcaccaccatcc 63 ||||||||||||||||||||| Sbjct: 140982 aatgtgacatcaccaccatcc 141002
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence Length = 203728 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ccatttgaattttctataaa 44 |||||||||||||||||||| Sbjct: 23208 ccatttgaattttctataaa 23189
>gb|AC100427.25| Mus musculus chromosome 10, clone RP23-136J15, complete sequence Length = 206339 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ttttctgagacagggcatgc 296 |||||||||||||||||||| Sbjct: 143297 ttttctgagacagggcatgc 143278
>gb|AC006039.3| Homo sapiens BAC clone RP11-319F3 from 7, complete sequence Length = 176257 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cttcatccctctttttcctt 329 |||||||||||||||||||| Sbjct: 56816 cttcatccctctttttcctt 56835
>gb|AC146006.2| Pan troglodytes BAC clone RP43-165A19 from 7, complete sequence Length = 211780 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 cttcatccctctttttcctt 329 |||||||||||||||||||| Sbjct: 18779 cttcatccctctttttcctt 18760
>gb|AC146236.3| Pan troglodytes BAC clone RP43-27L10 from 7, complete sequence Length = 184346 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cttcatccctctttttcctt 329 |||||||||||||||||||| Sbjct: 51678 cttcatccctctttttcctt 51697
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete sequence Length = 156282 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aacttccaaacaaaaatgcc 104 |||||||||||||||||||| Sbjct: 16747 aacttccaaacaaaaatgcc 16766
>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence Length = 15122 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aacttccaaacaaaaatgcc 104 |||||||||||||||||||| Sbjct: 3649 aacttccaaacaaaaatgcc 3668
>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence Length = 199202 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 ttagagccccttgaagctgaaggt 378 ||||| |||||||||||||||||| Sbjct: 47915 ttagatccccttgaagctgaaggt 47938
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the HHEX gene for hematopoietically expressed homeobox, the 5' end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a eukaryotic translation initiation factor 2 subunit 2 (eIF-2-beta) pseudogene and four CpG islands, complete sequence Length = 190144 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 agagccccttgaagctgaag 376 |||||||||||||||||||| Sbjct: 76717 agagccccttgaagctgaag 76736
>emb|AL031653.5|HS1121J18 Human DNA sequence from clone RP5-1121J18 on chromosome 20 Contains ESTs, STS, GSSs, a ca repeat polymorphism and genomic marker D20S115, complete sequence Length = 138145 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttccattttctgagacaggg 291 |||||||||||||||||||| Sbjct: 18065 ttccattttctgagacaggg 18084
>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the 3' end of the Col27a1 gene for procollagen type XXVII alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1, 2 and 3, an orosomucoid pseudogene, the gene for a novel protein similar to human AT-hook protein AKNA, gene 4933437N03Rik, the Whrn gene for whirlin and two CpG islands, complete sequence Length = 214370 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gagcttcctcatgtcctcct 231 |||||||||||||||||||| Sbjct: 31754 gagcttcctcatgtcctcct 31735
>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence Length = 198687 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctctttttccttagctttt 336 |||||||||||||||||||| Sbjct: 147791 cctctttttccttagctttt 147772
>gb|AC111654.6| Rattus norvegicus Chr BAC CH230-108G17 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 231706 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ttccattttctgagacaggg 291 |||||||||||||||||||| Sbjct: 68860 ttccattttctgagacaggg 68841
>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence Length = 55775 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gcttcctcatgtcctcctct 233 |||||||||||||||||||| Sbjct: 23507 gcttcctcatgtcctcctct 23526
>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA (Snap), mRNA Length = 2069 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 1762 gaattttctataaatgtgac 1743
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185918 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 106242 gaattttctataaatgtgac 106223
>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence Length = 168521 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 attttctataaatgtgacat 52 |||||||||||||||||||| Sbjct: 1961 attttctataaatgtgacat 1980
>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence Length = 195483 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aacttccaaacaaaaatgcc 104 |||||||||||||||||||| Sbjct: 160602 aacttccaaacaaaaatgcc 160621
>gb|AC008189.3|AC008189 Drosophila melanogaster, chromosome 3R, region 82C-82D, BAC clone BACR02C19, complete sequence Length = 188359 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ttttctgagacagggcatgc 296 |||||||||||||||||||| Sbjct: 114358 ttttctgagacagggcatgc 114377
>emb|BX825671.1|CNS0A66W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL55ZA07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 723 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ttgctcgaaaaaggcgggga 213 |||||||||||||||||||| Sbjct: 600 ttgctcgaaaaaggcgggga 619
>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence Length = 143516 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgaattttctataaatgtga 49 |||||||||||||||||||| Sbjct: 121095 tgaattttctataaatgtga 121076
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172507 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 catttgaattttctataaat 45 |||||||||||||||||||| Sbjct: 161099 catttgaattttctataaat 161080
>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence Length = 155354 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 attttctataaatgtgacat 52 |||||||||||||||||||| Sbjct: 23774 attttctataaatgtgacat 23793
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein 6430402L03 (LOC302412), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cttcctcatgtcctcctctt 234 |||||||||||||||||||| Sbjct: 1005 cttcctcatgtcctcctctt 986
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA Length = 2054 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 1730 gaattttctataaatgtgac 1711
>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175584 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 atgtgacatcaccaccatcc 63 |||||||||||||||||||| Sbjct: 71007 atgtgacatcaccaccatcc 71026
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 288396 gaattttctataaatgtgac 288377
>gb|AE003605.3| Drosophila melanogaster chromosome 3R, section 3 of 118 of the complete sequence Length = 273418 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ttttctgagacagggcatgc 296 |||||||||||||||||||| Sbjct: 201259 ttttctgagacagggcatgc 201278
>dbj|AK116643.1| Ciona intestinalis cDNA, clone:ciad036l23, full insert sequence Length = 3646 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ggggagcttcctcatgtcct 228 |||||||||||||||||||| Sbjct: 1697 ggggagcttcctcatgtcct 1716
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence Length = 198582 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgaattttctataaatgtga 49 |||||||||||||||||||| Sbjct: 63377 tgaattttctataaatgtga 63358
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 gcttccattttctgagacag 289 |||||||||||||||||||| Sbjct: 638542 gcttccattttctgagacag 638561
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 1718 gaattttctataaatgtgac 1699
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete sequence Length = 216415 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tttgaattttctataaatgt 47 |||||||||||||||||||| Sbjct: 104442 tttgaattttctataaatgt 104461 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,164,442 Number of Sequences: 3902068 Number of extensions: 4164442 Number of successful extensions: 92074 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91750 Number of HSP's gapped (non-prelim): 320 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)