ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33e01 |
|---|---|
| Clone Library Name | barley_pub |
>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2| Length = 1516 Score = 34.7 bits (78), Expect = 0.10 Identities = 28/85 (32%), Positives = 41/85 (48%) Frame = -1 Query: 336 PRSHSGSEQNRAHGSDLTPRRSGGKRGSNPWQVRVRIRLVPPPAALIGHGTHL*QFSPTS 157 P +G +++R++ L R + GS + +RL PAA+ G G SP Sbjct: 487 PNLSTGRQRSRSYDRSLQ-RSPPVRLGSLERMLSCPVRLSEGPAAMAGPG------SPP- 538 Query: 156 LWCCRRFASFLSLIEGRKKTFGTGN 82 RR SF L +GRKKT G+G+ Sbjct: 539 ----RRVTSFAELAKGRKKTGGSGS 559
>TILS_RALSO (Q8Y074) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 462 Score = 33.5 bits (75), Expect = 0.23 Identities = 28/79 (35%), Positives = 38/79 (48%) Frame = -3 Query: 415 LTAWQAGHVLHAFLKAVFSDRRLSWLAQISFRFRTKQSPWVRFNTAEKRWKKGEQSLAS* 236 L AW AG A L+AV S RRL L R +P VR A+ R +G+ + + Sbjct: 270 LRAWLAG----AGLRAV-SSRRLEDLRAQLLGARADGAPCVRLPGAQVRRYRGQAWIEAA 324 Query: 235 G*NSSCPATCSVNWSRYSP 179 G + PA C + SR+ P Sbjct: 325 GQPGAGPADCPIAVSRFDP 343
>MGR1_MOUSE (P97772) Metabotropic glutamate receptor 1 precursor (mGluR1)| Length = 1199 Score = 33.1 bits (74), Expect = 0.30 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 12/66 (18%) Frame = +1 Query: 37 RAPYRLTTPPTWPRKIA-----------CPKGLLPPLNQGQKRSKPSTTPQRGGGKLSQV 183 R P TTPP P A PKGL PPL Q Q++ P PQ+ + Q+ Sbjct: 981 RGPPVATTPPLPPHLSAEETPLFLADSVIPKGLPPPLPQQQQQPPPQPPPQQPKSLMDQL 1040 Query: 184 -STVTN 198 VTN Sbjct: 1041 QGVVTN 1046
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 32.7 bits (73), Expect = 0.39 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = +1 Query: 91 PKGLLPPLNQGQKRSKPSTTPQRGGGKLSQVSTVTN*RCRWRDKTNSNPNLPGIAPPF 264 P+ L P L+QG RS+ S P G S + + R R D T + +APPF Sbjct: 613 PQPLPPQLSQGDGRSETSQPPTPGSPSHSPLHSGPRPRRRESDPTGPQRQVFSVAPPF 670
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 32.3 bits (72), Expect = 0.51 Identities = 27/85 (31%), Positives = 40/85 (47%) Frame = -1 Query: 336 PRSHSGSEQNRAHGSDLTPRRSGGKRGSNPWQVRVRIRLVPPPAALIGHGTHL*QFSPTS 157 P ++G +++R++ L R + GS + +RL PAAL G SP Sbjct: 485 PNLNTGRQRSRSYDRSLE-RSPPVRLGSLERMLSCPVRLSEGPAALAGPA------SPP- 536 Query: 156 LWCCRRFASFLSLIEGRKKTFGTGN 82 RR SF L +GRKK G+G+ Sbjct: 537 ----RRVTSFAELAKGRKKAAGSGS 557
>EPC1_MOUSE (Q8C9X6) Enhancer of polycomb homolog 1| Length = 813 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 109 PLNQGQKRSKPSTTPQRGGGKLSQVSTVTN*RCRWRDKTNSNPNLP 246 P+NQ S+P+T+ + LSQ+ V CRWR P+LP Sbjct: 492 PVNQFANTSEPNTSDRSSSKDLSQI-LVDIKSCRWRHFRPRTPSLP 536
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = +1 Query: 37 RAPYRLTTPPTWPRKIACPKGLLP--PLNQGQKRSKPSTTPQR 159 RAP PP PRK A P +LP P Q + +P + QR Sbjct: 2352 RAPSAPDKPPRTPRKQATPSRVLPTKPKPNSQNKPRPPPSEQR 2394
>GAT13_ARATH (P69781) Putative GATA transcription factor 13| Length = 331 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = +1 Query: 31 TVRAPYRLTTPPTWPRKIACPKGLLPPLNQGQKRSKPSTTPQRGGGK 171 T+ + + +PPT P + P G ++ G +R K ++P+ GG + Sbjct: 171 TILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAE 217
>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)| Length = 1125 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 55 TTPPTWPRKIACPKGLLPPLNQGQKRSKPSTTPQRGGGKLS 177 TT + ++ P G PP R KP + P R G LS Sbjct: 836 TTSASSVKRNTTPTGAAPPAGMTSTRVKPMSAPSRSSGALS 876
>MGR1_RAT (P23385) Metabotropic glutamate receptor 1 precursor (mGluR1)| Length = 1199 Score = 28.9 bits (63), Expect = 5.7 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 13/67 (19%) Frame = +1 Query: 37 RAPYRLTTPPTWPRKIA-----------CPKGLLPPLNQGQ-KRSKPSTTPQRGGGKLSQ 180 R P TTPP P A PKGL PPL Q Q ++ P PQ+ + Q Sbjct: 981 RGPPVATTPPLPPHLTAEETPLFLADSVIPKGLPPPLPQQQPQQPPPQQPPQQPKSLMDQ 1040 Query: 181 V-STVTN 198 + VTN Sbjct: 1041 LQGVVTN 1047
>ADA2B_AMBHO (O18935) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 386 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 31 TVRAPYRLTTPPTWPRKIACPKGLLPPLNQGQKRSKPSTTPQ 156 T+ P T PP+WP LP +QGQK T+P+ Sbjct: 247 TLEDPVTSTLPPSWP--------ALPNSDQGQKEGVCETSPE 280
>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)| Length = 694 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +1 Query: 55 TTPPTWPRKIACPK-GLLPPLNQGQKRSKPSTTPQRGGGK 171 T P+ PR++ P G PP G R + P RGGG+ Sbjct: 158 TAAPSPPRRLPPPPPGEQPPSGSGHGRPPGARPPHRGGGR 197
>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)| (CAIN) Length = 2182 Score = 28.9 bits (63), Expect = 5.7 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Frame = +1 Query: 70 WPRKIACPKGLLPPLNQGQKRSKPST----TPQRGGGKLSQVSTVTN*RCRWRDKTNSNP 237 WP + AC G P +Q PS+ TP+ GK R K+ P Sbjct: 2043 WPVEAACQTGAEPTFSQATSTKVPSSGSTQTPESHQGKTESS----------RAKSRLLP 2092 Query: 238 NLPGIAPPFST 270 N+P + P +T Sbjct: 2093 NMPKLVIPSAT 2103
>ARP4_SCHPO (Q9P7X7) Actin-like protein arp4| Length = 433 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +2 Query: 2 SETVIFLSEEQFEHPTGSRHPLHGREKLPVPKVFFLP 112 SET I +E +FE P GSR + G E+ +P+ F+P Sbjct: 255 SETTI--AESEFEFPDGSR-MMFGAERYQIPEHLFVP 288
>SPAO_SALTY (P40699) Surface presentation of antigens protein spaO| Length = 303 Score = 28.9 bits (63), Expect = 5.7 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 334 QISFRFRTKQSPWVRFNTAEKRW 266 + + + T+Q WVR + AEKRW Sbjct: 28 EATLEYPTRQGMWVRLSDAEKRW 50
>SPAO_SALTI (Q56022) Surface presentation of antigens protein spaO| Length = 303 Score = 28.9 bits (63), Expect = 5.7 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 334 QISFRFRTKQSPWVRFNTAEKRW 266 + + + T+Q WVR + AEKRW Sbjct: 28 EATLEYPTRQGMWVRLSDAEKRW 50
>SPAO_SALEN (P0A1K8) Surface presentation of antigens protein spaO| Length = 303 Score = 28.9 bits (63), Expect = 5.7 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 334 QISFRFRTKQSPWVRFNTAEKRW 266 + + + T+Q WVR + AEKRW Sbjct: 28 EATLEYPTRQGMWVRLSDAEKRW 50
>SPAO_SALDU (P0A1K7) Surface presentation of antigens protein spaO| Length = 303 Score = 28.9 bits (63), Expect = 5.7 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 334 QISFRFRTKQSPWVRFNTAEKRW 266 + + + T+Q WVR + AEKRW Sbjct: 28 EATLEYPTRQGMWVRLSDAEKRW 50
>CAPP_PSEPK (Q88MR4) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 875 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -2 Query: 308 TEPMGQI*HRGEAVEKGGAIPGKLGLEFVLSRHLQR*LVTVLTCDNFPPP 159 ++P G + R E+G I K GL + ++L L VL PPP Sbjct: 594 SQPPGSVAGRFRTTEQGEMIRFKFGLPGIAEQNLNLYLAAVLEATLLPPP 643
>CAPP_PSESM (Q886R9) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 878 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -2 Query: 308 TEPMGQI*HRGEAVEKGGAIPGKLGLEFVLSRHLQR*LVTVLTCDNFPPP 159 ++P G + R E+G I K GL + ++L L VL PPP Sbjct: 597 SQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPP 646
>CAPP_PSEAE (Q9HXV3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 878 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -2 Query: 308 TEPMGQI*HRGEAVEKGGAIPGKLGLEFVLSRHLQR*LVTVLTCDNFPPP 159 ++P G + R E+G I K GL + ++L L VL PPP Sbjct: 597 SQPPGSVAGRFRVTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLMPPP 646
>GAF1_SCHPO (Q10280) Transcription factor gaf1 (Gaf-1)| Length = 855 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = -1 Query: 315 EQNRAHGSDLTPRRSGGKRGS 253 ++NR G+ TP++SGG++GS Sbjct: 681 KRNRGVGTSATPKQSGGRKGS 701
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 342 GWPRSHSGSEQNRAHGSDLTPRRSGGKRGSNP 247 GW S + + N +G + PR S G G+NP Sbjct: 312 GWNGSPTPAAGNNTNGRPVAPRPSAGAGGANP 343
>CAT1_NEUCR (Q9C168) Catalase-1 (EC 1.11.1.6)| Length = 736 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = +2 Query: 38 EHPTGSRHPLHGREKLPVPKVFF---LPSIKDRKEANLL 145 E PT + HP HGR+ + + + F P+IK R+ A ++ Sbjct: 524 EAPTTTNHPNHGRKTINLSQTEFPPATPTIKSRRVAIII 562
>SYN2_RAT (Q63537) Synapsin-2 (Synapsin II)| Length = 586 Score = 28.1 bits (61), Expect = 9.7 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +1 Query: 73 PRKIACPKGLLPPLNQGQKRSKPSTTPQRGGGKLS-QVSTVTN*RCRWRDKTNSNPNLPG 249 PR++ L P + S S+ PQR GG S QV+ ++ + + P P Sbjct: 475 PRRLPSGPSLPPSSSSSSSSSSSSSAPQRPGGPTSTQVNASSS------SNSLAEPQAPQ 528 Query: 250 IAPP 261 APP Sbjct: 529 AAPP 532 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,082,417 Number of Sequences: 219361 Number of extensions: 1578056 Number of successful extensions: 4286 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4282 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
