ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33d10 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 164 bits (416), Expect = 7e-41 Identities = 78/99 (78%), Positives = 91/99 (91%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 T+NGVIG+IASLPHD Y+FLEKLQ L K IKGVG LSHEQWRSF+N+KKT +A+NFLDG Sbjct: 997 TVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDG 1056 Query: 271 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 155 DLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1057 DLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 164 bits (416), Expect = 7e-41 Identities = 78/99 (78%), Positives = 91/99 (91%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 T+NGVIG+IASLPHD Y+FLEKLQ L K IKGVG LSHEQWRSF+N+KKT +A+NFLDG Sbjct: 992 TVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDG 1051 Query: 271 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 155 DLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1052 DLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 157 bits (396), Expect = 2e-38 Identities = 75/99 (75%), Positives = 90/99 (90%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 T+NGVIG+IASLP + Y FLEKLQ++L K IKGVG LSHEQWRSF+N+K+T+EARNFLDG Sbjct: 990 TVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDG 1049 Query: 271 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 155 DLIESFLDL+R+KME+++K+M V VEEL KRVEELTRLH Sbjct: 1050 DLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 149 bits (376), Expect = 3e-36 Identities = 71/99 (71%), Positives = 86/99 (86%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 T++G+IG+IASLP + Y FLEKLQ +L K IKGVG LSHEQWRSF+N+K+T+EA+ +LDG Sbjct: 990 TVSGMIGVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDG 1049 Query: 271 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 155 DLIESFLDL+R KMEE++K M V VEEL KRVEELTRLH Sbjct: 1050 DLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 96.7 bits (239), Expect = 2e-20 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 10/109 (9%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 T+NG+IG++ SL Y L +Q L K IK VG + H WRSFH ++KT A F+DG Sbjct: 1032 TVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDG 1091 Query: 271 DLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 155 DLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1092 DLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 96.7 bits (239), Expect = 2e-20 Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 10/109 (9%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 T+NG+IG++ SL Y L +Q L K IK VG + H WRSFH ++KT A F+DG Sbjct: 1032 TVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDG 1091 Query: 271 DLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 155 DLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1092 DLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 54.7 bits (130), Expect = 1e-07 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 T++G + I+ + L +LQ + K I G LSH++W+ + + +TS + + +DG Sbjct: 968 TVDGSLMIVGDAGMSNTPLLLQLQDNIRKVIPSFGGLSHKEWKEYRGENETSPS-DLIDG 1026 Query: 271 DLIESFLDLNRSKMEEVAKA------MAVPVEELSKRVEELTRLH 155 LIES L L + E+ + + V++L +E L +LH Sbjct: 1027 SLIESILGLREPILNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 46.6 bits (109), Expect = 3e-05 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKT--SEARNFL 278 T++G +G LP Y LQ L+ + + + L+ +++R+ + KK + +R + Sbjct: 1352 TLDGALGYCLPLPEKVYRRFLMLQNVLLSYQEHLCGLNPKEYRTLKSSKKQGINPSRCII 1411 Query: 277 DGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 158 DGDLI S+ + S+ EVAK + EE+ + E+ RL Sbjct: 1412 DGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEIERL 1451
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 39.3 bits (90), Expect = 0.005 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 14/108 (12%) Frame = -2 Query: 448 INGVIGIIASLPHDHYV-FLEKLQATLVKFI-----------KGVGSLS--HEQWRSFHN 311 I G +G++ L ++ V FL LQ L K+ G L H ++RS++N Sbjct: 1148 IQGTLGLLLPLSTENEVKFLGDLQLLLRKYFDYNFDDFDKDKNGYNLLGKDHLKFRSYYN 1207 Query: 310 DKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 167 K N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1208 PVK-----NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 37.7 bits (86), Expect = 0.014 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -2 Query: 448 INGVIGIIASLPHDHYV-FLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDG 272 + G IG++ L V L LQ + + + H + RS++N K N +DG Sbjct: 1124 LQGTIGLLIPLVSKSEVELLFNLQLYMQQSQNNLVGKDHLKLRSYYNPIK-----NVIDG 1178 Query: 271 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 167 DL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1179 DLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 36.2 bits (82), Expect = 0.039 Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Frame = -2 Query: 337 HEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 167 H+++RS++ + R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1304 HQEYRSYY-----APVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane| protein P.70] Length = 922 Score = 33.9 bits (76), Expect = 0.20 Identities = 20/50 (40%), Positives = 23/50 (46%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 270 PAP+P PG P P Q Q P+P PQRQ + PQ P R Sbjct: 573 PAPQPGPQPGPQPPQPPQPPQPPQPPQP------PQRQPEAPAPQPPAGR 616
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 32.0 bits (71), Expect = 0.74 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -2 Query: 307 KKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 167 K E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 84 KTIQESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 32.0 bits (71), Expect = 0.74 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -2 Query: 328 WRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 158 + +F +D+ + + + D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 80 FENFKDDQVIQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>Y109_NPVOP (O10348) Hypothetical 44.3 kDa protein (ORF109)| Length = 390 Score = 32.0 bits (71), Expect = 0.74 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = -2 Query: 346 SLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMA-VPVEELSKRVEE 170 +L HE+ S +N + R L GD+ + +NR+ ++ V A + + + S+ + E Sbjct: 224 NLPHEEVDSLYNKLNWARTRRLLRGDIPSNCATVNRASLQYVKDAQTLLHIAKCSQTIVE 283 Query: 169 LTRL--H*VAPCRVHPVLFVR 113 R+ + P ++ P++ V+ Sbjct: 284 FVRIFQQLIFPYQIVPIVIVK 304
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 31.6 bits (70), Expect = 0.97 Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = -1 Query: 425 RLPAPRPLCVPGEAPGNPGQVHQG-RGQPEP----RAVAVVPQRQEDVGGPQLPGRRPD* 261 RL P P V G+ PG P Q G R P P R +P R G P LPG RP Sbjct: 762 RLSPPSPGGVRGK-PGPPAQSSLGGRNPPLPPSTGRPAPAIPNRPGG-GAPPLPGGRPGG 819 Query: 260 VIPRP 246 +P P Sbjct: 820 SLPPP 824
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 31.6 bits (70), Expect = 0.97 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +1 Query: 265 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLPGASPGTH 402 SG PGS GP + GTTA + +G P+P PG+P PG H Sbjct: 1000 SGAPPGSLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVP--PPGPH 1046
>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)| Length = 303 Score = 31.6 bits (70), Expect = 0.97 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -2 Query: 361 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGDLIESF--LDLNRSKMEEVAKAMA 206 +KGV +L S+E+ ++ HN KK E R +DGD+ + + + + K+E + KA A Sbjct: 47 MKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANA 106
>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane| protein P.68] Length = 916 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/50 (36%), Positives = 21/50 (42%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRR 270 PAP+P PG PG P+P PQRQ + PQ P R Sbjct: 572 PAPKPAPQPGPQPG-----------PQPPQPPQPPQRQPEAPAPQPPAGR 610
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 31.2 bits (69), Expect = 1.3 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -2 Query: 451 TINGVIGIIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKT---SEARNF 281 +++G G + L Y L LQ + + L + RS + ARN Sbjct: 1350 SLDGSFGFVRPLTEKSYRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNL 1409 Query: 280 LDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 158 +DGD++E +L L+ ++A+ + V + + +L R+ Sbjct: 1410 IDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRM 1450
>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)| Length = 298 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Frame = -2 Query: 361 IKGVGSL------SHEQWRSFHNDKKTSEARNFLDGD--LIESFLDLNRSKMEEVAKAMA 206 +KGV +L S+E+ ++ HN KK E R +DGD ++ + + + K+E + KA A Sbjct: 42 MKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANA 101
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = -1 Query: 395 PGEAPGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPG 276 PGE PG PGQ H +G P P+ + P + G P +PG Sbjct: 634 PGE-PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPG 674
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = -1 Query: 416 APRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 276 AP P VP APG G + Q R P P P R GGP++ G Sbjct: 315 APSPSPVPSPAPGRKGSI-QDRPLPPP------PPRLPGYGGPKVEG 354
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 30.0 bits (66), Expect = 2.8 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +1 Query: 265 SGRRPGSCGPPTSSCRCGTTA---TARGSGCPRP**T*PGLPGASPGTH 402 SG PGS GP + G+TA + +G P+P PG+P PG H Sbjct: 1000 SGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVP--PPGPH 1046
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.0 bits (66), Expect = 2.8 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGR 273 P P+ P PG PGQ G PR A P + + G P PGR Sbjct: 114 PGPQGFQGPAGEPGEPGQT----GPAGPRGPAGSPGKAGEDGHPGKPGR 158
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 29.6 bits (65), Expect = 3.7 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = -1 Query: 413 PRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRP 246 P P P + G P +GRG P P P R P P RP V+P P Sbjct: 284 PPPPPPPPHSSGPPPPPARGRGAPPP-----PPSRAPTAAPPPPPPSRPGVVVPPP 334
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 29.6 bits (65), Expect = 3.7 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = -1 Query: 413 PRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRP 246 P P P + G P +GRG P P P R P P RP V+P P Sbjct: 284 PPPPPPPPHSSGPPPPPARGRGAPPP-----PPSRAPTAAPPPPPPSRPGVVVPPP 334
>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 626 Score = 29.6 bits (65), Expect = 3.7 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 425 RLPAPRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVV 318 R P P P VPGE P PG G G+ P + V+ Sbjct: 9 RGPGPGPGEVPGEGPPGPGGTGGGPGRGRPSSYRVL 44
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 29.6 bits (65), Expect = 3.7 Identities = 29/91 (31%), Positives = 41/91 (45%) Frame = -2 Query: 313 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 134 N KKT E N D +E LN KM V K+ E+ R L R H + RV Sbjct: 1160 NSKKTME--NVESLDKLECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1211 Query: 133 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 41 L RF+ V++W E+ P ++ T ++ Sbjct: 1212 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1242
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 29.6 bits (65), Expect = 3.7 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -2 Query: 313 NDKKTSEARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH*VAPCRV 134 N KKT E + LD +E LN KM V K+ E+ R L R H + RV Sbjct: 1151 NSKKTMENVDSLDK--LECRFKLNSYKMVYVIKS-----EDYMYRRTALLRAH-QSHERV 1202 Query: 133 HPVLFVRFRCVVNRWRPENDPLQVFVATFRF 41 L RF+ V++W E+ P ++ T ++ Sbjct: 1203 SKRLHQRFQAWVDKWTKEHVPREMAAETSKW 1233
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 3.7 Identities = 24/57 (42%), Positives = 28/57 (49%) Frame = -1 Query: 446 QRGHWYHRLPAPRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 276 +RG R PA P +PGE G PG+ G G PR VA P R GGP + G Sbjct: 483 ERGPSGFRGPAG-PNGIPGEK-GPPGE-RGGPGPAGPRGVAGEPGRDGTPGGPGIRG 536
>CCR9_HUMAN (P51686) C-C chemokine receptor type 9 (C-C CKR-9) (CC-CKR-9)| (CCR-9) (GPR-9-6) (G-protein coupled receptor 28) (CDw199 antigen) Length = 357 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = -2 Query: 403 YVFL-EKLQATLVKFIKGVGSLSHEQWRSF 317 YVF+ E+ + LVK +K +G +S QW SF Sbjct: 305 YVFVGERFRRDLVKTLKNLGCISQAQWVSF 334
>FOXQ1_HUMAN (Q9C009) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) Length = 403 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = -1 Query: 428 HRLPAPRPLCVPGEAPGNPGQVHQGRGQP-EPRAVAVVPQRQEDVGGP 288 HR P P P P EAPG P P PR + P RQE+ P Sbjct: 218 HRAPVPAPGLRPEEAPGLPAAPPPAPAAPASPRMRS--PARQEERASP 263
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -2 Query: 271 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 155 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 29.3 bits (64), Expect = 4.8 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQGRGQPEPRAVAV----VPQRQEDVG-GP--QLPGRRP 267 P P P PG P P + Q P A A PQ Q G GP PG RP Sbjct: 3835 PQPGPTTAPGPQPAGPPRAEQASSSKPPAAKAPQQGRAPQAQTTPGPGPAGAKPGARP 3892
>YQ35_CAEEL (Q09456) Putative cuticle collagen C09G5.5| Length = 317 Score = 29.3 bits (64), Expect = 4.8 Identities = 20/54 (37%), Positives = 27/54 (50%) Frame = +1 Query: 250 RGMTQSGRRPGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPGASPGTHSGR 411 RG+ RPG GPP + + G+ +T +G P P PG P PG H G+ Sbjct: 201 RGLPGPSGRPGPQGPPGAPGQPGSGSTPGPAGPPGP----PG-PNGQPG-HPGQ 248
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 386 APGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 276 APG+PG V G+G P PR P R+ D G PG Sbjct: 411 APGSPG-VKGGKGGPGPRGPKGEPGRRGDPGTKGGPG 446
>MKL1_MOUSE (Q8K4J6) MKL/myocardin-like protein 1 (Myocardin-related| transcription factor A) (MRTF-A) (Megakaryoblastic leukemia 1 protein homolog) (Basic SAP coiled-coil transcription activator) Length = 964 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -1 Query: 407 PLCVPGEAPGNPGQVHQGRG-QPEPRAVAVVPQRQEDVGGPQLPGRRPD 264 P +PG+ P G P+P ++ +PQ G P LPGR D Sbjct: 801 PPSLPGKEKSPPAAAAYGPPLTPQPSPLSELPQAAPPPGSPTLPGRLED 849
>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 392 GEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGP 288 G+ G P G PEP A +V+ ++D GGP Sbjct: 57 GQGGGGPSPSPGGEPPPEPFANSVLQLHEQDTGGP 91
>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 392 GEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGP 288 G+ G P G PEP A +V+ ++D GGP Sbjct: 57 GQGGGGPSPSPGGEPPPEPFANSVLQLHEQDTGGP 91
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = -1 Query: 413 PRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 276 P L + PG PGQ + G P PR +P + VG P LPG Sbjct: 607 PTQLTLRPGPPGYPGQKGE-TGFPGPRGQEGLPGKPGIVGAPGLPG 651
>SOX17_HUMAN (Q9H6I2) Transcription factor SOX-17| Length = 414 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -1 Query: 416 APRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPG 276 AP P P + QV G PEP A + P+ + GP +PG Sbjct: 239 APMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPG 285
>CCR9_MOUSE (Q9WUT7) C-C chemokine receptor type 9 (C-C CKR-9) (CC-CKR-9)| (CCR-9) (Chemokine C-C receptor 10) Length = 369 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = -2 Query: 403 YVFL-EKLQATLVKFIKGVGSLSHEQWRSF 317 YVF+ E+ + LVK +K +G +S QW SF Sbjct: 317 YVFVGERFRRDLVKTLKNLGCISQAQWVSF 346
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = -1 Query: 413 PRPLCVPGEAPGNPGQVHQGRGQ-PEPRAVAVVPQRQEDVGGPQLPG 276 P P VPG PG PG+ P P + VP R+ G P LPG Sbjct: 673 PGPPGVPG-LPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPG 718
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 276 P P+ P PG PGQ +G P P+ P + +G P LPG Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 754
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 276 P P+ P PG PGQ +G P P+ P + +G P LPG Sbjct: 705 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 754
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 28.9 bits (63), Expect = 6.3 Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Frame = +1 Query: 253 GMTQSGRRPGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG-ASPGTHSGRGAG 420 G S PG GPP R G T A G P P PG PG PG AG Sbjct: 1105 GKDGSNGIPGPIGPPGPRGRSGETGPAGPPGNPGP----PGPPGPPGPGIDMSAFAG 1157
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%) Frame = -1 Query: 407 PLCVPGE--APGNPGQVH-QGR----GQPEPRAVAVVPQRQEDVGGPQLPGRR 270 PL PGE PG PG + +G+ G P P+ P + + G P +PG+R Sbjct: 586 PLGAPGEDGRPGPPGSIGIKGQPGTMGLPGPKGSNGDPGKPGEAGNPGVPGQR 638
>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687| Length = 1237 Score = 28.9 bits (63), Expect = 6.3 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 1/84 (1%) Frame = -1 Query: 389 EAPGNPGQVHQGRG-QPEPRAVAVVPQRQEDVGGPQLPGRRPD*VIPRPXXXXXXXXXXX 213 E PG PG+ G G + E A A GP +P + D +P P Sbjct: 35 EGPGGPGKPEPGVGSESEDTAAASAGD------GPGVPAQASDHGLPPPDISVVSVIVKN 88 Query: 212 XXGPCRGAVQAGGGADETALGSAV 141 P + AGG A + A + V Sbjct: 89 TVCPEQSEALAGGSAGDGAQAAGV 112
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 28.9 bits (63), Expect = 6.3 Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Frame = +1 Query: 277 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG--ASPGTHSGRG 414 PG GPP SC G G P PGLPG SPG G+G Sbjct: 818 PGVPGPPGHSCERG------APGIPGQ----PGLPGYPGSPGAPGGKG 855
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 28.9 bits (63), Expect = 6.3 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Frame = -2 Query: 451 TINGVIG-IIASLPHDHYVFLEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLD 275 TI+G +G ++ + D F+ L+ + + H +R ++ K +D Sbjct: 1121 TISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYRGYYVPIK-----GVVD 1175 Query: 274 GDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 167 GDL ESF L K + +A + V ++ K++E++ Sbjct: 1176 GDLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQM 1211
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 276 P P+ P PG PGQ +G P P+ P + +G P LPG Sbjct: 707 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 756
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -1 Query: 419 PAPRPLCVPGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 276 P P+ P PG PGQ +G P P+ P + +G P LPG Sbjct: 707 PGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 756
>SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1)| Length = 346 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 394 LEKLQATLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRSKMEEV 221 L++L TL S HEQ ++ HN K + R+ +DGD+ + L ++KM +V Sbjct: 61 LDRLNETL--------SSCHEQSKTLHNAKAVKDLRSKMDGDV---GVALKKAKMIKV 107
>CEBPA_MOUSE (P53566) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 359 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 253 GMTQSGRRPGSCGPPTSSCRCGTTATARGS-GCPRP**T*PGLPGASPGTHSGRGAG 420 G T +PG PP + A A G+ G P P GL GA P +G G G Sbjct: 210 GQTTMHLQPGHPTPPPTPVPSPHAAPALGAAGLPGPGSALKGLAGAHPDLRTGGGGG 266
>TRI16_HUMAN (O95361) Tripartite motif protein 16 (Estrogen-responsive B box| protein) Length = 564 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -1 Query: 422 LPAPRPLCVPGEAPGNPGQVHQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD 264 L AP PL P P + G P P + + P +EDVG + GR + Sbjct: 6 LMAPGPL--PRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETE 56
>SMN_CANFA (O02771) Survival motor neuron protein| Length = 287 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/33 (39%), Positives = 14/33 (42%) Frame = -1 Query: 434 WYHRLPAPRPLCVPGEAPGNPGQVHQGRGQPEP 336 W LP P P+ G PG PG G P P Sbjct: 186 WNSFLPPPPPMSGSGLGPGKPGVKFSGPPPPPP 218
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 8.2 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 54 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 158 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>COL40_CAEEL (P34804) Cuticle collagen 40| Length = 306 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Frame = +1 Query: 277 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG--ASPGTHSGRG 414 PG GPP + G T + G G P PG PG +PGT G Sbjct: 174 PGPAGPPGPAGADGNTPSGGGEGPAGP----PGPPGPAGNPGTDGAPG 217
>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2014 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Frame = -1 Query: 407 PLCVPGEAPGNPGQV--HQGRGQPEPRAVAVVPQRQEDVGGPQLPGRRPD 264 P P P Q+ H G PR Q QE + GPQ P R P+ Sbjct: 1058 PARTPARPPERKAQIERHLESGHTGPRQSLGGWQSQERLSGPQSPNRHPE 1107
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = -1 Query: 395 PGEAPGNPGQVHQ--GRGQPEPRAVAVVPQRQEDVGGPQLPG 276 P APG G + G G PR VA P R GGP + G Sbjct: 495 PNGAPGEKGPAGERGGPGPAGPRGVAGEPGRDGTPGGPGIRG 536
>YHY2_YEAST (P38870) Hypothetical 90.1 kDa protein in OYE2-GND1 intergenic| region Length = 785 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = -2 Query: 373 LVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESF-LDLNRSKMEEVAKAMAVPV 197 L+K IK ++ W+ N+ + EA N ++ L+E N E+V + +P+ Sbjct: 60 LIKDIKFYNDFVNKFWKPTLNNLQKMEATNSMNSRLLEVMSKQFNIISTEQVERDCKIPL 119 Query: 196 EELSKRVEELTR 161 +EL E R Sbjct: 120 QELRDLNESFLR 131
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Frame = -1 Query: 395 PGEAPGNPGQVHQGRGQP------EPRAVAVVPQRQEDVGGPQLPGR 273 P + PG PGQ +GQP +P P +Q+ PQ PG+ Sbjct: 127 PPQQPGAPGQYPPQQGQPGQYPPQQPGQPGQYPPQQQGQYPPQQPGQ 173
>BRO1_YEAST (P48582) Vacuolar sorting protein BRO1 (BRO domain-containing| protein 1) (BCK1-like resistance to osmotic shock protein 1) (Vacuolar protein sorting protein 31) (Amino acid sensor-independent protein 6) (Nitrogen permease inactivating protein Length = 844 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = -2 Query: 346 SLSHEQWRSFHNDKKTSE---ARNFLDGDLIESFL 251 S QWR+F+++K TSE RN +G+L S L Sbjct: 29 SYGSSQWRTFYDEKATSELDHLRNNANGELAPSSL 63
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/49 (40%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Frame = +1 Query: 277 PGSCGPPTSSCRCGTTATARGSGCPRP**T*PGLPG-ASPGTHSGRGAG 420 PG GPP R G T A G P P PG PG PG AG Sbjct: 1112 PGPIGPPGPRGRSGETGPAGPPGNPGP----PGPPGPPGPGIDMSAFAG 1156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,462,202 Number of Sequences: 219361 Number of extensions: 1177468 Number of successful extensions: 5332 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 4803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5300 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
