Clone Information

BLAST Search Result

Clone Name	rbastl33d10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC130728.2\| Oryza sativa (japonica cultivar-group) chromosome...	260	4e-66
2	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	260	4e-66
3	dbj\|AK104782.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	260	4e-66
4	dbj\|AK065508.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	260	4e-66
5	dbj\|AK059736.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	260	4e-66
6	dbj\|AB037144.1\| Oryza sativa (japonica cultivar-group) OsUV-DDB ...	260	4e-66
7	ref\|XM_476019.1\| Oryza sativa (japonica cultivar-group), predic...	256	5e-65
8	gb\|BT024148.1\| Zea mays clone EL01N0440D08 mRNA sequence	230	3e-57
9	gb\|AY104362.1\| Zea mays PCO060159 mRNA sequence	131	2e-27
10	ref\|XM_785030.1\| PREDICTED: Strongylocentrotus purpuratus hypoth...	42	1.5
11	ref\|NM_118228.2\| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING...	40	6.1
12	ref\|XM_482858.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.1
13	ref\|NM_021099.2\| Mus musculus kit oncogene (Kit), mRNA	40	6.1
14	ref\|XM_956852.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.1
15	ref\|XM_326439.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.1
16	gb\|CP000352.1\| Ralstonia metallidurans CH34, complete genome	40	6.1
17	ref\|XM_547518.2\| PREDICTED: Canis familiaris similar to Apoptosi...	40	6.1
18	gb\|AC099575.10\| Mus musculus chromosome 14, clone RP23-83E2, com...	40	6.1
19	gb\|AC110157.7\| Mus musculus chromosome 14, clone RP23-151K23, co...	40	6.1
20	emb\|X65998.1\|MMCKITPRO M.musculus genomic DNA of c-kit promoter ...	40	6.1
21	gb\|AC129091.19\| Medicago truncatula clone mth2-15j7, complete se...	40	6.1
22	emb\|AL353573.10\| Human DNA sequence from clone RP11-550E18 on ch...	40	6.1
23	emb\|Y00864.1\|MMCKIT Mouse c-kit mRNA	40	6.1
24	emb\|AL161554.2\|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ...	40	6.1
25	emb\|AL021960.2\|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC...	40	6.1
26	gb\|AF356350.1\|AF356350 Mus musculus c-KIT gene, promoter region ...	40	6.1
27	dbj\|AK220648.1\| Arabidopsis thaliana mRNA for UV-damaged DNA-bin...	40	6.1
28	gb\|AC149135.2\| Medicago truncatula chromosome 2 BAC clone mth2-3...	40	6.1
29	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
30	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	40	6.1
31	dbj\|AP006461.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
32	emb\|AL731729.10\| Mouse DNA sequence from clone RP23-92L12 on chr...	40	6.1
33	dbj\|AP004585.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.1
34	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	6.1
35	gb\|AE017221.1\| Thermus thermophilus HB27, complete genome	40	6.1
36	dbj\|AP007294.1\| Lotus japonicus genomic DNA, clone:LjT42E17, TM0...	40	6.1

>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score =  260 bits (131), Expect = 4e-66
 Identities = 260/303 (85%)
 Strand = Plus / Minus

                                                                         
Query: 150   acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 209
             |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 77982 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 77923

                                                                         
Query: 210   atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 269
             ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 77922 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 77863

                                                                         
Query: 270   tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 329
             || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 77862 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 77803

                                                                         
Query: 330   tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 389
             ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 77802 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 77743

                                                                         
Query: 390   tccaggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgttgatg 449
             || || || ||||| || || || || || || || || || ||||| ||||||||||||
Sbjct: 77742 tcaagaaatacatactgctcatgtggaagcgaagcaataatcccaataaccccgttgatg 77683

                
Query: 450   gtg 452
             |||
Sbjct: 77682 gtg 77680

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  260 bits (131), Expect = 4e-66
 Identities = 260/303 (85%)
 Strand = Plus / Minus

                                                                            
Query: 150      acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 209
                |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 29299325 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 29299266

                                                                            
Query: 210      atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 269
                ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 29299265 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 29299206

                                                                            
Query: 270      tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 329
                || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 29299205 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 29299146

                                                                            
Query: 330      tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 389
                ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 29299145 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 29299086

                                                                            
Query: 390      tccaggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgttgatg 449
                || || || ||||| || || || || || || || || || ||||| ||||||||||||
Sbjct: 29299085 tcaagaaatacatactgctcatgtggaagcgaagcaataatcccaataaccccgttgatg 29299026

                   
Query: 450      gtg 452
                |||
Sbjct: 29299025 gtg 29299023

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>dbj|AK104782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C09, full
           insert sequence
          Length = 1135

 Score =  260 bits (131), Expect = 4e-66
 Identities = 260/303 (85%)
 Strand = Plus / Minus

                                                                       
Query: 150 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 209
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 210 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 269
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 270 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 329
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                                       
Query: 330 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 389
           ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 495

                                                                       
Query: 390 tccaggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgttgatg 449
           || || || ||||| || || || || || || || || || ||||| ||||||||||||
Sbjct: 494 tcaagaaatacatactgctcatgtggaagcgaagcaataatcccaataaccccgttgatg 435

              
Query: 450 gtg 452
           |||
Sbjct: 434 gtg 432

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>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full
            insert sequence
          Length = 3792

 Score =  260 bits (131), Expect = 4e-66
 Identities = 260/303 (85%)
 Strand = Plus / Minus

                                                                        
Query: 150  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 209
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 210  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 269
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 270  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 329
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                                        
Query: 330  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 389
            ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 3152

                                                                        
Query: 390  tccaggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgttgatg 449
            || || || ||||| || || || || || || || || || ||||| ||||||||||||
Sbjct: 3151 tcaagaaatacatactgctcatgtggaagcgaagcaataatcccaataaccccgttgatg 3092

               
Query: 450  gtg 452
            |||
Sbjct: 3091 gtg 3089

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>dbj|AK059736.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D04, full
           insert sequence
          Length = 1135

 Score =  260 bits (131), Expect = 4e-66
 Identities = 260/303 (85%)
 Strand = Plus / Minus

                                                                       
Query: 150 acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 209
           |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 734 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 675

                                                                       
Query: 210 atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 269
           ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 674 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 615

                                                                       
Query: 270 tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 329
           || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 555

                                                                       
Query: 330 tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 389
           ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 554 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 495

                                                                       
Query: 390 tccaggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgttgatg 449
           || || || ||||| || || || || || || || || || ||||| ||||||||||||
Sbjct: 494 tcaagaaatacatactgctcatgtggaagcgaagcaataatcccaataaccccgttgatg 435

              
Query: 450 gtg 452
           |||
Sbjct: 434 gtg 432

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>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged
            DNA binding protein, complete cds
          Length = 3658

 Score =  260 bits (131), Expect = 4e-66
 Identities = 260/303 (85%)
 Strand = Plus / Minus

                                                                        
Query: 150  acctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgcc 209
            |||||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||
Sbjct: 3391 acctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggaccccc 3332

                                                                        
Query: 210  atcgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcagg 269
            ||  |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||
Sbjct: 3331 atacccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcagg 3272

                                                                        
Query: 270  tcgccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccac 329
            || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3271 tcaccatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccat 3212

                                                                        
Query: 330  tgctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttc 389
            ||||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||
Sbjct: 3211 tgctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttc 3152

                                                                        
Query: 390  tccaggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgttgatg 449
            || || || ||||| || || || || || || || || || ||||| ||||||||||||
Sbjct: 3151 tcaagaaatacatactgctcatgtggaagcgaagcaataatcccaataaccccgttgatg 3092

               
Query: 450  gtg 452
            |||
Sbjct: 3091 gtg 3089

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>ref|XM_476019.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score =  256 bits (129), Expect = 5e-65
 Identities = 258/301 (85%)
 Strand = Plus / Minus

                                                                        
Query: 152  ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 211
            |||||||| ||| |||||||||||||||| |||||| |||||||| || |||||| ||||
Sbjct: 3273 ctagtgcaatctagtcagctcctccaccctcttggatagctcctcaacggggacccccat 3214

                                                                        
Query: 212  cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 271
              |||||||||||||||||||||||   ||| | || || ||||||||||| ||||||||
Sbjct: 3213 acccttggccacctcctccatcttgtttctgcttagatcaaggaatgactcgatcaggtc 3154

                                                                        
Query: 272  gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 331
             || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3153 accatccaggaaattgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccattg 3094

                                                                        
Query: 332  ctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttctc 391
            ||| ||||||||| | ||||||||||| |||||||| ||||| || | ||||||||||||
Sbjct: 3093 ctcatggctcaggttccccacgccctttatgaacttcaccagagtcgactggagcttctc 3034

                                                                        
Query: 392  caggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgttgatggt 451
             || || ||||| || || || || || || || || || ||||| ||||||||||||||
Sbjct: 3033 aagaaatacatactgctcatgtggaagcgaagcaataatcccaataaccccgttgatggt 2974

             
Query: 452  g 452
            |
Sbjct: 2973 g 2973

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>gb|BT024148.1| Zea mays clone EL01N0440D08 mRNA sequence
          Length = 1582

 Score =  230 bits (116), Expect = 3e-57
 Identities = 242/284 (85%)
 Strand = Plus / Plus

                                                                       
Query: 162 ctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccatcgccttggcc 221
           ||||||||||| ||||||| ||||||||||||||| || |||||  |||||||||||| |
Sbjct: 246 ctcgtcagctcttccaccctcttggacagctcctccacggggacgcccatcgccttggac 305

                                                                       
Query: 222 acctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtcgccgtccagg 281
           |||||||||||||||  || | | ||||| ||||| ||||| |||||||| ||||| |||
Sbjct: 306 acctcctccatcttgctccggctaaggtcaaggaaagactcgatcaggtcaccgtcgagg 365

                                                                       
Query: 282 aagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactgctcgtggctc 341
           ||||| || ||||||| ||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 366 aagttccgagcctccgccgtcttcttgtcgttatggaaggaccgccattgctcgtggctc 425

                                                                       
Query: 342 aggctgcccacgcccttgatgaacttgaccagggttgcctggagcttctccaggaacaca 401
           ||| | || |||||||| ||| |||| || ||||| | |||||||||||||||||| |  
Sbjct: 426 aggtttccgacgccctttatgtacttcacaagggtcgactggagcttctccaggaagatg 485

                                                       
Query: 402 tagtggtcgtggggcagggaggcgatgataccaatgaccccgtt 445
           || |||||||| || |||||||| || || ||||| ||||||||
Sbjct: 486 tattggtcgtgcgggagggaggcaataatgccaatcaccccgtt 529

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>gb|AY104362.1| Zea mays PCO060159 mRNA sequence
          Length = 1296

 Score =  131 bits (66), Expect = 2e-27
 Identities = 237/294 (80%)
 Strand = Plus / Minus

                                                                       
Query: 152 ctagtgcagtctcgtcagctcctccacccgcttggacagctcctcgacagggaccgccat 211
           |||||| || ||||||||||| |||||   ||||||||| ||||| || |  ||  ||||
Sbjct: 860 ctagtgaagcctcgtcagctcttccacaatcttggacagatcctccaccgaaacgcccat 801

                                                                       
Query: 212 cgccttggccacctcctccatcttggacctgttgaggtcgaggaatgactcaatcaggtc 271
            ||||||| |||| |||||||||||  || | | ||||| ||||| ||||| ||||||||
Sbjct: 800 agccttggacaccacctccatcttgctccggctaaggtcaaggaacgactcgatcaggtc 741

                                                                       
Query: 272 gccgtccaggaagttgcgggcctccgacgtcttcttgtcgttgtggaacgaccgccactg 331
            || || |||||||| || |||||||  |||||||||||||| |||||||||||||| ||
Sbjct: 740 accatcaaggaagttccgtgcctccgctgtcttcttgtcgttatggaacgaccgccattg 681

                                                                       
Query: 332 ctcgtggctcaggctgcccacgcccttgatgaacttgaccagggttgcctggagcttctc 391
           ||| ||||||| | | || || ||||| ||| ||||||| || || | ||||| ||||||
Sbjct: 680 ctcatggctcatgtttccaactccctttatgtacttgacaagagtggactggaacttctc 621

                                                                 
Query: 392 caggaacacatagtggtcgtggggcagggaggcgatgataccaatgaccccgtt 445
            |||||    || ||||| || || ||||||||||| || ||||||||||||||
Sbjct: 620 aaggaaggtgtaatggtcatgcgggagggaggcgataatgccaatgaccccgtt 567

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>ref|XM_785030.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC585193 (LOC585193), mRNA
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 212 cgccttggccacctcctccat 232
           |||||||||||||||||||||
Sbjct: 264 cgccttggccacctcctccat 244

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>ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING PROTEIN 1 B)
            AT4G21100 (DDB1B) mRNA, complete cds
          Length = 3390

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 309  tcgttgtggaacgaccgccactgctcgtggct 340
            ||||||| |||||| | |||||||||||||||
Sbjct: 3110 tcgttgttgaacgatctccactgctcgtggct 3079

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>ref|XM_482858.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cttggacagctcctcgacag 201
            ||||||||||||||||||||
Sbjct: 1413 cttggacagctcctcgacag 1394

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>ref|NM_021099.2| Mus musculus kit oncogene (Kit), mRNA
          Length = 5132

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  cgccatcgccttggccacct 225
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346

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>ref|XM_956852.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  ccttggccacctcctccatc 233
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529

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>ref|XM_326439.1| Neurospora crassa OR74A hypothetical protein (NCU06585.1) partial
            mRNA
          Length = 3123

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  ccttggccacctcctccatc 233
            ||||||||||||||||||||
Sbjct: 2548 ccttggccacctcctccatc 2529

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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 209     catcgccttggccacctcctccat 232
               |||||||||||||||||| |||||
Sbjct: 2717222 catcgccttggccacctcttccat 2717245

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>ref|XM_547518.2| PREDICTED: Canis familiaris similar to Apoptosis stimulating of p53
            protein 2 (Tumor suppressor p53-binding protein 2)
            (p53-binding protein 2) (53BP2) (Bcl2-binding protein)
            (Bbp) (LOC490397), mRNA
          Length = 3792

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  gtctcgtcagctcctccacc 179
            ||||||||||||||||||||
Sbjct: 1102 gtctcgtcagctcctccacc 1083

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>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence
          Length = 138102

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   ctcctccatcttggacctgt 243
             ||||||||||||||||||||
Sbjct: 32235 ctcctccatcttggacctgt 32254

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>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence
          Length = 243114

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    ctcctccatcttggacctgt 243
              ||||||||||||||||||||
Sbjct: 203840 ctcctccatcttggacctgt 203859

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>emb|X65998.1|MMCKITPRO M.musculus genomic DNA of c-kit promoter region
          Length = 1161

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 cgccatcgccttggccacct 225
           ||||||||||||||||||||
Sbjct: 30  cgccatcgccttggccacct 11

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>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aaagttacactcttatcaaa 28
             ||||||||||||||||||||
Sbjct: 92380 aaagttacactcttatcaaa 92361

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>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 96    tttacaacacagcgaaaacgaacaaata 123
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177

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>emb|Y00864.1|MMCKIT Mouse c-kit mRNA
          Length = 5098

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  cgccatcgccttggccacct 225
            ||||||||||||||||||||
Sbjct: 2365 cgccatcgccttggccacct 2346

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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 309   tcgttgtggaacgaccgccactgctcgtggct 340
             ||||||| |||||| | |||||||||||||||
Sbjct: 70651 tcgttgttgaacgatctccactgctcgtggct 70682

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>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7J7 (ESSA project)
          Length = 91387

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 309   tcgttgtggaacgaccgccactgctcgtggct 340
             ||||||| |||||| | |||||||||||||||
Sbjct: 12448 tcgttgttgaacgatctccactgctcgtggct 12479

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>gb|AF356350.1|AF356350 Mus musculus c-KIT gene, promoter region and partial cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 cgccatcgccttggccacct 225
           ||||||||||||||||||||
Sbjct: 75  cgccatcgccttggccacct 56

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>dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-binding protein-like,
            complete cds, clone: RAFL21-64-B09
          Length = 3586

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 309  tcgttgtggaacgaccgccactgctcgtggct 340
            ||||||| |||||| | |||||||||||||||
Sbjct: 3264 tcgttgttgaacgatctccactgctcgtggct 3233

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>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aaagttacactcttatcaaa 28
             ||||||||||||||||||||
Sbjct: 94991 aaagttacactcttatcaaa 95010

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 182      cttggacagctcctcgacag 201
                ||||||||||||||||||||
Sbjct: 22995444 cttggacagctcctcgacag 22995425

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    cgccttggccacctcctcca 231
              ||||||||||||||||||||
Sbjct: 290449 cgccttggccacctcctcca 290468

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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    cttggacagctcctcgacag 201
              ||||||||||||||||||||
Sbjct: 169282 cttggacagctcctcgacag 169263

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>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
             sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     acagataaagttacactctt 22
             ||||||||||||||||||||
Sbjct: 39645 acagataaagttacactctt 39626

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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   cttggacagctcctcgacag 201
             ||||||||||||||||||||
Sbjct: 55172 cttggacagctcctcgacag 55153

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 205     ccgccatcgccttggccacc 224
               ||||||||||||||||||||
Sbjct: 1957900 ccgccatcgccttggccacc 1957919

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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     cgccttggccacctcctcca 231
               ||||||||||||||||||||
Sbjct: 1595005 cgccttggccacctcctcca 1594986

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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     tcttatcaaagtcgaaaaca 38
              ||||||||||||||||||||
Sbjct: 118575 tcttatcaaagtcgaaaaca 118594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,535,466
Number of Sequences: 3902068
Number of extensions: 3535466
Number of successful extensions: 67990
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67652
Number of HSP's gapped (non-prelim): 322
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result