ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SECE_BUCAI (P57152) Preprotein translocase secE subunit 31 1.5
2GLGA2_ANASP (Q8Z0Q9) Probable glycogen synthase 2 (EC 2.4.1.21) ... 30 1.9
3GLGA1_ANAVT (Q3M9U1) Glycogen synthase 1 (EC 2.4.1.21) (Starch [... 30 2.5
4SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT) (Ala... 29 4.2
5KCM1_XENLA (Q91636) Kinesin central motor 1 (XKCM1) 29 5.5
6CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOA... 28 9.4

>SECE_BUCAI (P57152) Preprotein translocase secE subunit|
          Length = 127

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 101 YHYRQNKQKVP*SPSWLSFSITPFFLIGDYL 193
           +HY +NK K+P    W+S SI  FF++  ++
Sbjct: 4   HHYNRNKHKIPEKVKWISISI--FFILSFFI 32



to top

>GLGA2_ANASP (Q8Z0Q9) Probable glycogen synthase 2 (EC 2.4.1.21) (Starch|
           [bacterial glycogen] synthase 2)
          Length = 492

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 190 SCSKPVAAWIGKTDNEK-IAVLHNCFELLLRRGSKLCGVDTTTKGG 324
           +  KP+ A+IG+ DN+K + ++H+     L +G++   + + T+ G
Sbjct: 296 AADKPIIAYIGRLDNQKGVHLVHHAIYHALNKGAQFVLLGSATEAG 341



to top

>GLGA1_ANAVT (Q3M9U1) Glycogen synthase 1 (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase 1)
          Length = 492

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 190 SCSKPVAAWIGKTDNEK-IAVLHNCFELLLRRGSKLCGVDTTTKGG 324
           +  KP+ A+IG+ DN+K + ++H+     L +G++   + + T+ G
Sbjct: 296 AADKPIIAYIGRLDNQKGVHLVHHAIYHSLNKGAQFVLLGSATEAG 341



to top

>SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT)|
           (Alanine/serine/cysteine/ threonine transporter) (ASCT1)
          Length = 532

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
 Frame = -2

Query: 299 PQSLLPRRRSNSKQLCKTAIFSLSVFPIHAATGL-----------LQDSHL*EKRELWRR 153
           P +   R R  +  L + A+  L+V  + A  GL            Q ++L    E+  R
Sbjct: 25  PGTAAGRARRCAGFLRRQALVLLTVSGVLAGAGLGAALRGLSLSRTQVTYLAFPGEMLLR 84

Query: 152 ITKMVIMELSVCFACSDSLVLCFFCLMRIGG 60
           + +M+I+ L VC   S +  L   CL R+GG
Sbjct: 85  MLRMIILPLVVCSLVSGAASLDASCLGRLGG 115



to top

>KCM1_XENLA (Q91636) Kinesin central motor 1 (XKCM1)|
          Length = 730

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 253 HNCFELLLRRGSKLCGVDTTTKGGGQER 336
           H C +++LRRGSKL G  +     G ER
Sbjct: 475 HACLQIILRRGSKLHGKFSLVDLAGNER 502



to top

>CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 639

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 272 SNSKQLCKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITK 144
           S   QL +TA+ +   + + A TG+  D+HL   REL R + K
Sbjct: 485 SEKLQLLQTAMQAHKQYTVMAITGMAIDNHLLALRELARDLCK 527


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,417,899
Number of Sequences: 219361
Number of extensions: 1300578
Number of successful extensions: 2904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top