ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478776.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-05
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-05
3dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-05
4dbj|AK099771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-05
5dbj|AK067380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.004
6gb|AC148990.6| Mus musculus BAC clone RP24-466N11 from chromosom... 40 0.86
7gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 0.86
8gb|AC119236.8| Mus musculus chromosome 19, clone RP24-213B12, co... 40 0.86
9emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chro... 40 0.86
10gb|AC021035.8| Homo sapiens chromosome 10 clone RP11-381K7, comp... 40 0.86
11gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, comple... 40 0.86
12dbj|BS000103.1| Pan troglodytes chromosome 22 clone:PTB-031J04, ... 40 0.86
13gb|AC151978.3| Mus musculus BAC clone RP24-545C19 from 19, compl... 40 0.86
14dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 0.86
15emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on ch... 40 0.86
16dbj|AP000220.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL... 40 0.86
17dbj|AP000136.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL... 40 0.86
18dbj|AP000084.1| Homo sapiens genomic DNA of 21q22.1, APP related... 40 0.86
19gb|AC124425.3| Mus musculus BAC clone RP24-230N16 from chromosom... 38 3.4
20gb|AC135254.2| Homo sapiens X BAC RP11-98L4 (Roswell Park Cancer... 38 3.4
21emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chro... 38 3.4
22emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I1... 38 3.4
23gb|AC096577.3| Homo sapiens BAC clone RP11-556I14 from 4, comple... 38 3.4
24gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome... 38 3.4
25gb|AC003048.1|AC003048 Homo sapiens Xp22 Cosmid (LLNL X Chromoso... 38 3.4
26gb|AC135252.2| Homo sapiens X BAC RP11-196I10 (Roswell Park Canc... 38 3.4 
>ref|XM_478776.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3961

 Score = 56.0 bits (28), Expect = 1e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 43   tatgcccctccagctttccaccatgggaggataacctact 82
            ||||| |||||||||||||| |||| ||||||||||||||
Sbjct: 3593 tatgcacctccagctttccatcatgagaggataacctact 3554



 Score = 44.1 bits (22), Expect = 0.055
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ttttgacatccttgcataaaactgct 26
            ||||||||||| ||||||||||||||
Sbjct: 3631 ttttgacatccatgcataaaactgct 3606
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 1e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 43       tatgcccctccagctttccaccatgggaggataacctact 82
                ||||| |||||||||||||| |||| ||||||||||||||
Sbjct: 22996252 tatgcacctccagctttccatcatgagaggataacctact 22996291



 Score = 44.1 bits (22), Expect = 0.055
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 1        ttttgacatccttgcataaaactgct 26
                ||||||||||| ||||||||||||||
Sbjct: 22996214 ttttgacatccatgcataaaactgct 22996239
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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 56.0 bits (28), Expect = 1e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 43    tatgcccctccagctttccaccatgggaggataacctact 82
             ||||| |||||||||||||| |||| ||||||||||||||
Sbjct: 71466 tatgcacctccagctttccatcatgagaggataacctact 71505



 Score = 44.1 bits (22), Expect = 0.055
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 1     ttttgacatccttgcataaaactgct 26
             ||||||||||| ||||||||||||||
Sbjct: 71428 ttttgacatccatgcataaaactgct 71453
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>dbj|AK099771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D13, full
            insert sequence
          Length = 3961

 Score = 56.0 bits (28), Expect = 1e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 43   tatgcccctccagctttccaccatgggaggataacctact 82
            ||||| |||||||||||||| |||| ||||||||||||||
Sbjct: 3593 tatgcacctccagctttccatcatgagaggataacctact 3554



 Score = 44.1 bits (22), Expect = 0.055
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ttttgacatccttgcataaaactgct 26
            ||||||||||| ||||||||||||||
Sbjct: 3631 ttttgacatccatgcataaaactgct 3606
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>dbj|AK067380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099N15, full
            insert sequence
          Length = 1636

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 43   tatgcccctccagctttccaccatgggaggataacc 78
            ||||| |||||||||||||| |||| ||||||||||
Sbjct: 1493 tatgcacctccagctttccatcatgagaggataacc 1458



 Score = 44.1 bits (22), Expect = 0.055
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ttttgacatccttgcataaaactgct 26
            ||||||||||| ||||||||||||||
Sbjct: 1531 ttttgacatccatgcataaaactgct 1506
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>gb|AC148990.6| Mus musculus BAC clone RP24-466N11 from chromosome 7, complete sequence
          Length = 198504

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     cagctttccaccatgggagg 72
              ||||||||||||||||||||
Sbjct: 122345 cagctttccaccatgggagg 122364
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      tatgcccctccagctttcca 62
               ||||||||||||||||||||
Sbjct: 2470506 tatgcccctccagctttcca 2470487
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>gb|AC119236.8| Mus musculus chromosome 19, clone RP24-213B12, complete sequence
          Length = 163348

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    cctccagctttccaccatgg 68
             ||||||||||||||||||||
Sbjct: 77638 cctccagctttccaccatgg 77619
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>emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chromosome 11p11.2-12
             Contains the start of the CD44 (CD44 antigen (homing
             function andnIndian blood group system)) gene, ESTs, STSs,
             GSSs and a CpG island, complete sequence
          Length = 150533

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctttccaccatgggaggata 75
             ||||||||||||||||||||
Sbjct: 83586 ctttccaccatgggaggata 83567
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>gb|AC021035.8| Homo sapiens chromosome 10 clone RP11-381K7, complete sequence
          Length = 173791

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    gctttccaccatgggaggat 74
             ||||||||||||||||||||
Sbjct: 76092 gctttccaccatgggaggat 76111
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>gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, complete sequence
          Length = 111078

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    ctttccaccatgggaggata 75
             ||||||||||||||||||||
Sbjct: 10891 ctttccaccatgggaggata 10910
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>dbj|BS000103.1| Pan troglodytes chromosome 22 clone:PTB-031J04, map 22, complete
             sequences
          Length = 164274

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctttccaccatgggaggata 75
             ||||||||||||||||||||
Sbjct: 63594 ctttccaccatgggaggata 63575
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>gb|AC151978.3| Mus musculus BAC clone RP24-545C19 from 19, complete sequence
          Length = 163426

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     cctccagctttccaccatgg 68
              ||||||||||||||||||||
Sbjct: 148807 cctccagctttccaccatgg 148826
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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     ctttccaccatgggaggata 75
              ||||||||||||||||||||
Sbjct: 160740 ctttccaccatgggaggata 160721
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>emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on chromosome 11, complete
             sequence
          Length = 189196

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    cctccagctttccaccatgg 68
             ||||||||||||||||||||
Sbjct: 46908 cctccagctttccaccatgg 46927
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>dbj|AP000220.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
             clone:B2291C14, complete sequence
          Length = 61209

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctttccaccatgggaggata 75
             ||||||||||||||||||||
Sbjct: 21036 ctttccaccatgggaggata 21017
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>dbj|AP000136.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
             B2291C14-R44F3, segment 1/10, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctttccaccatgggaggata 75
             ||||||||||||||||||||
Sbjct: 21036 ctttccaccatgggaggata 21017
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>dbj|AP000084.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533
             region, segment 1/7
          Length = 100000

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ctttccaccatgggaggata 75
             ||||||||||||||||||||
Sbjct: 21036 ctttccaccatgggaggata 21017
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>gb|AC124425.3| Mus musculus BAC clone RP24-230N16 from chromosome 5, complete sequence
          Length = 178931

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    tttatgcccctccagcttt 59
             |||||||||||||||||||
Sbjct: 36862 tttatgcccctccagcttt 36844
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>gb|AC135254.2| Homo sapiens X BAC RP11-98L4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 62121

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    gcccctccagctttccacc 64
             |||||||||||||||||||
Sbjct: 33977 gcccctccagctttccacc 33995
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>emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chromosome 9 Contains a
             pseudogene similar to part of nucleolar protein 5A (56kDa
             with KKE/D repeat) (NOL5A) (NOP56), the ELAVL2 gene for
             ELAV (embryonic lethal, abnormal vision, Drosophila)-like
             2 (Hu antigen B) (HUB, HELN1), two novel genes, the 5' end
             of a novel gene and a CpG island, complete sequence
          Length = 183483

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 48    ccctccagctttccaccatggga 70
             ||||| |||||||||||||||||
Sbjct: 27071 ccctctagctttccaccatggga 27093
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>emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I14, complete sequence
          Length = 198637

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 48     ccctccagctttccaccatggga 70
              ||||| |||||||||||||||||
Sbjct: 152663 ccctctagctttccaccatggga 152685
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>gb|AC096577.3| Homo sapiens BAC clone RP11-556I14 from 4, complete sequence
          Length = 156095

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    tttccaccatgggaggata 75
             |||||||||||||||||||
Sbjct: 39241 tttccaccatgggaggata 39259
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>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence
          Length = 245443

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     tttatgcccctccagcttt 59
              |||||||||||||||||||
Sbjct: 232028 tttatgcccctccagcttt 232010
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>gb|AC003048.1|AC003048 Homo sapiens Xp22 Cosmid (LLNL X Chromosome Cosmid library) complete
            sequence
          Length = 41081

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 46   gcccctccagctttccacc 64
            |||||||||||||||||||
Sbjct: 1132 gcccctccagctttccacc 1114
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>gb|AC135252.2| Homo sapiens X BAC RP11-196I10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 62101

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    gcccctccagctttccacc 64
             |||||||||||||||||||
Sbjct: 28149 gcccctccagctttccacc 28131


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 663,606
Number of Sequences: 3902068
Number of extensions: 663606
Number of successful extensions: 31346
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31296
Number of HSP's gapped (non-prelim): 50
length of query: 82
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 61
effective length of database: 17,151,101,840
effective search space: 1046217212240
effective search space used: 1046217212240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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