ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33d07 |
|---|---|
| Clone Library Name | barley_pub |
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 57.8 bits (138), Expect = 1e-08 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Frame = -3 Query: 418 YGLGVRENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGI 239 + L EN+ +AV + ILG+ PCE +D V HT LSGVF G VL + + + Sbjct: 782 FQLSTVENIPDAVKKISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAV 841 Query: 238 S-GPKEVAMKLAVRSDDPEVSDRI 170 +AM + ++S++P V+D + Sbjct: 842 DPNDNSIAMNIIIKSNEPLVADLV 865
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 57.0 bits (136), Expect = 2e-08 Identities = 30/76 (39%), Positives = 45/76 (59%) Frame = -3 Query: 418 YGLGVRENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGI 239 + L + L EAV+ +I+ LGMQPCE +D V N SH+ L+G+F G +LVR + Sbjct: 786 FALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLAL 845 Query: 238 SGPKEVAMKLAVRSDD 191 + V M++ VRS + Sbjct: 846 A--DGVTMQVTVRSKE 859
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 56.2 bits (134), Expect = 3e-08 Identities = 30/76 (39%), Positives = 45/76 (59%) Frame = -3 Query: 418 YGLGVRENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGI 239 + L + L EAV+ +I+ LGMQPCE +D V N SH+ L+GV+ G +LVR + Sbjct: 786 FALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLAL 845 Query: 238 SGPKEVAMKLAVRSDD 191 + V M++ VRS + Sbjct: 846 A--DGVTMQVTVRSKE 859
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 52.8 bits (125), Expect = 3e-07 Identities = 25/55 (45%), Positives = 34/55 (61%) Frame = -3 Query: 418 YGLGVRENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 254 + L + L EAV ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 789 FTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 52.8 bits (125), Expect = 3e-07 Identities = 25/55 (45%), Positives = 34/55 (61%) Frame = -3 Query: 418 YGLGVRENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 254 + L + L EAV ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 789 FTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 33.1 bits (74), Expect = 0.27 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = -3 Query: 418 YGLGVRENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGI 239 Y L + ++ S V +L MQP EGT+ + H LSG + KVL + Sbjct: 818 YVLSLLDSFRSTCSRVAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAH 876 Query: 238 SGPKE-VAMKLAVRSDDPEVSDRIHEIVANG 149 S E + +K+ R + SD E+V G Sbjct: 877 SKDGEGITIKVIARGE----SDSSVELVVGG 903
>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor| (Protein SLS1) Length = 643 Score = 30.4 bits (67), Expect = 1.8 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Frame = +3 Query: 150 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLELFWT 329 P +IS LS+T G S +ASF ++ F PLI ++K LPM S + Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPMYKESS----------S 434 Query: 330 TSVPSQGCMPRMLIT-ALTASAKFSLTPSP 416 ++VP + + LIT A + + + TP P Sbjct: 435 SAVPVPVPLDQHLITNAHQSFIQLNFTPVP 464
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 289 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 182 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 289 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 182 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 289 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 182 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 289 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 182 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 289 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 182 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 289 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 182 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)| Length = 757 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +3 Query: 150 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLEL 320 PF T+S SL + +S T++ TS P+ TKT + P +TP L+L Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTPTKSLTSSLDL 518
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 289 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 182 G + +V L RL +GI P+EV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular| matrix protein F22) Length = 2130 Score = 28.9 bits (63), Expect = 5.2 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%) Frame = +3 Query: 183 TSGSSDLTASFMATSFG-------PLIPNDSLTKTFTLPMNTPESRQVCDLELFWTTSVP 341 +S SD + F T+ G PLIP+D L KT T ++RQ W + +P Sbjct: 1443 SSEKSDSSNLFSPTASGTGKFYSSPLIPSDQLLKTL-----TEKNRQ-------WFSLLP 1490 Query: 342 SQGCMPRMLITALTASAKFSLTPSPY 419 C M +T + A SLTP + Sbjct: 1491 RVPC-DDMSVTHVDTPATTSLTPQSH 1515
>RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1082 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 162 ISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLE 317 +S +L T+ S+LT + FGP N TK +NT + +VC +E Sbjct: 365 LSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIE 416 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,585,581 Number of Sequences: 219361 Number of extensions: 948268 Number of successful extensions: 2294 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2294 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
