Clone Name | rbastl33d05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | YJG4_YEAST (P47038) Hypothetical 13.9 kDa protein in SMC3-MRPL8 ... | 30 | 1.7 | 2 | PMT6_YEAST (P42934) Dolichyl-phosphate-mannose--protein mannosyl... | 29 | 3.8 |
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>YJG4_YEAST (P47038) Hypothetical 13.9 kDa protein in SMC3-MRPL8 intergenic| region Length = 131 Score = 30.4 bits (67), Expect = 1.7 Identities = 21/73 (28%), Positives = 30/73 (41%) Frame = -2 Query: 361 SLKFVTHMVGVLLLENLEVASQQCIVMAEMEDIEHFIVPWAWVLLSP*TSHSAFGTCAVI 182 SLKF +VG+ +N S++C + AEM + +S + GTC Sbjct: 15 SLKFF--VVGITSFKNCRWPSEECTIAAEMSSYDSV------------SSSGSGGTCC-- 58 Query: 181 GCVHCCVSCCFHR 143 CC CC R Sbjct: 59 ----CCCCCCLCR 67
>PMT6_YEAST (P42934) Dolichyl-phosphate-mannose--protein mannosyltransferase 6| (EC 2.4.1.109) Length = 759 Score = 29.3 bits (64), Expect = 3.8 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -2 Query: 100 WISLVHVVIFPFCGKYMLYCW 38 WIS V ++IFPF ++LY W Sbjct: 622 WISTVSLIIFPFIILFILYRW 642 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,293,344 Number of Sequences: 219361 Number of extensions: 1048305 Number of successful extensions: 2478 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2473 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)