ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YJG4_YEAST (P47038) Hypothetical 13.9 kDa protein in SMC3-MRPL8 ... 30 1.7
2PMT6_YEAST (P42934) Dolichyl-phosphate-mannose--protein mannosyl... 29 3.8

>YJG4_YEAST (P47038) Hypothetical 13.9 kDa protein in SMC3-MRPL8 intergenic|
           region
          Length = 131

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -2

Query: 361 SLKFVTHMVGVLLLENLEVASQQCIVMAEMEDIEHFIVPWAWVLLSP*TSHSAFGTCAVI 182
           SLKF   +VG+   +N    S++C + AEM   +              +S  + GTC   
Sbjct: 15  SLKFF--VVGITSFKNCRWPSEECTIAAEMSSYDSV------------SSSGSGGTCC-- 58

Query: 181 GCVHCCVSCCFHR 143
               CC  CC  R
Sbjct: 59  ----CCCCCCLCR 67



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>PMT6_YEAST (P42934) Dolichyl-phosphate-mannose--protein mannosyltransferase 6|
           (EC 2.4.1.109)
          Length = 759

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 100 WISLVHVVIFPFCGKYMLYCW 38
           WIS V ++IFPF   ++LY W
Sbjct: 622 WISTVSLIIFPFIILFILYRW 642


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,293,344
Number of Sequences: 219361
Number of extensions: 1048305
Number of successful extensions: 2478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2473
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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