ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151366.3| Aotus nancymaae clone CH258-105B22, complete sequ... 40 5.6
2gb|AY625267.1| Mus musculus l-arginine:glycine amidinotransferas... 40 5.6
3gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, com... 40 5.6
4gb|AC148207.4| Callicebus moloch clone LB5-404B3, complete sequence 40 5.6
5gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome... 40 5.6
6gb|AC146757.19| Medicago truncatula clone mth2-16n21, complete s... 40 5.6
7gb|AC147536.12| Medicago truncatula clone mth2-9l3, complete seq... 40 5.6
8emb|AL390718.11| Human DNA sequence from clone RP11-502H18 on ch... 40 5.6
9emb|AL009029.1|HS164C20 Human DNA sequence from clone RP1-164C20... 40 5.6
10gb|BC003879.1| Mus musculus glycine amidinotransferase (L-argini... 40 5.6
11gb|AC093549.1| Drosophila melanogaster 3L BAC RP98-14L10 (Roswel... 40 5.6
12ref|NM_025961.2| Mus musculus glycine amidinotransferase (L-argi... 40 5.6
13emb|BX530719.4| Zebrafish DNA sequence from clone DKEYP-51D11 in... 40 5.6
14gb|AC012123.8| Homo sapiens chromosome 18, clone RP11-57G22, com... 40 5.6
15dbj|AK152069.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 5.6
16dbj|AK146111.1| Mus musculus 14 days pregnant adult female place... 40 5.6
17dbj|AK146052.1| Mus musculus 11 days pregnant adult female place... 40 5.6
18dbj|AK145914.1| Mus musculus 14 days pregnant adult female place... 40 5.6
19dbj|AK145862.1| Mus musculus 12 days pregnant adult female place... 40 5.6
20dbj|AK151313.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 5.6
21dbj|AK153450.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 5.6
22dbj|AK007325.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 40 5.6
23gb|AC025887.4|AC025887 Homo sapiens chromosome , clone RP11-386P... 40 5.6
24gb|AC068919.4| Homo sapiens BAC clone RP11-340I19 from 2, comple... 40 5.6
25dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 5.6
26emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chr... 40 5.6
27gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24... 40 5.6
28gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromoso... 40 5.6
29gb|AC004715.1|AC004715 Drosophila melanogaster DNA sequence (P1 ... 40 5.6
30emb|AL824711.14| Mouse DNA sequence from clone RP23-112I20 on ch... 40 5.6
31gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 5.6
32emb|AL772253.12| Mouse DNA sequence from clone RP23-101F14 on ch... 40 5.6

>gb|AC151366.3| Aotus nancymaae clone CH258-105B22, complete sequence
          Length = 188026

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    tcactcatctatggaaacaa 155
              ||||||||||||||||||||
Sbjct: 132499 tcactcatctatggaaacaa 132518



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>gb|AY625267.1| Mus musculus l-arginine:glycine amidinotransferase mRNA, partial
           cds
          Length = 718

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 274 gacaacagcacccaagccca 293



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>gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, complete sequence
          Length = 262581

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    aacaactgacacaacaatgt 173
              ||||||||||||||||||||
Sbjct: 196678 aacaactgacacaacaatgt 196659



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>gb|AC148207.4| Callicebus moloch clone LB5-404B3, complete sequence
          Length = 175081

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   tcactcatctatggaaacaa 155
             ||||||||||||||||||||
Sbjct: 78186 tcactcatctatggaaacaa 78205



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>gb|AC131786.3| Mus musculus BAC clone RP24-397H7 from chromosome 5, complete sequence
          Length = 176338

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     aaaccaaaatatactcctta 37
              ||||||||||||||||||||
Sbjct: 127179 aaaccaaaatatactcctta 127160



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>gb|AC146757.19| Medicago truncatula clone mth2-16n21, complete sequence
          Length = 135915

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tcatctatggaaacaacaac 159
              ||||||||||||||||||||
Sbjct: 107134 tcatctatggaaacaacaac 107115



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>gb|AC147536.12| Medicago truncatula clone mth2-9l3, complete sequence
          Length = 111486

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   tcatctatggaaacaacaac 159
             ||||||||||||||||||||
Sbjct: 82702 tcatctatggaaacaacaac 82683



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>emb|AL390718.11| Human DNA sequence from clone RP11-502H18 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene, the QSCN6 gene for
             quiescin Q6 and a CpG island, complete sequence
          Length = 176123

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    aaaaagggaatatcacaacatgta 87
             |||||| |||||||||||||||||
Sbjct: 14823 aaaaagagaatatcacaacatgta 14800



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>emb|AL009029.1|HS164C20 Human DNA sequence from clone RP1-164C20 on chromosome 6q16.1-22.1,
             complete sequence
          Length = 161475

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    ttaccaacagtacaacatat 54
             ||||||||||||||||||||
Sbjct: 32446 ttaccaacagtacaacatat 32427



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>gb|BC003879.1| Mus musculus glycine amidinotransferase (L-arginine:glycine
           amidinotransferase), mRNA (cDNA clone MGC:6646
           IMAGE:3495871), complete cds
          Length = 2419

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 696 gacaacagcacccaagccca 715



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>gb|AC093549.1| Drosophila melanogaster 3L BAC RP98-14L10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 180633

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 143   tctatggaaacaacaactgacacaacaa 170
             ||||||| ||||||||||| ||||||||
Sbjct: 69006 tctatggcaacaacaactgccacaacaa 69033



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>ref|NM_025961.2| Mus musculus glycine amidinotransferase (L-arginine:glycine
           amidinotransferase) (Gatm), mRNA
          Length = 2419

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 696 gacaacagcacccaagccca 715



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>emb|BX530719.4| Zebrafish DNA sequence from clone DKEYP-51D11 in linkage group 14,
              complete sequence
          Length = 197865

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      aaaaacaagtctcaaaccaa 24
              ||||||||||||||||||||
Sbjct: 176119 aaaaacaagtctcaaaccaa 176138



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>gb|AC012123.8| Homo sapiens chromosome 18, clone RP11-57G22, complete sequence
          Length = 193486

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 5      aaaaacaagtctcaaaccaaaata 28
              ||||||||||||||| ||||||||
Sbjct: 189818 aaaaacaagtctcaagccaaaata 189795



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>dbj|AK152069.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830047A18 product:glycine
           amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 2351

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 692 gacaacagcacccaagccca 711



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>dbj|AK146111.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530030O12
           product:glycine amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 2358

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 692 gacaacagcacccaagccca 711



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>dbj|AK146052.1| Mus musculus 11 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530026P04
           product:glycine amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 2357

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 690 gacaacagcacccaagccca 709



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>dbj|AK145914.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530014H16
           product:glycine amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 2362

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 693 gacaacagcacccaagccca 712



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>dbj|AK145862.1| Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530009G08
           product:glycine amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 2353

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 693 gacaacagcacccaagccca 712



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>dbj|AK151313.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830027P09 product:glycine
           amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 1951

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 690 gacaacagcacccaagccca 709



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>dbj|AK153450.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830162M15 product:glycine
           amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 1937

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 676 gacaacagcacccaagccca 695



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>dbj|AK007325.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810003P21 product:glycine
           amidinotransferase (L-arginine:glycine
           amidinotransferase), full insert sequence
          Length = 1955

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 gacaacagcacccaagccca 244
           ||||||||||||||||||||
Sbjct: 691 gacaacagcacccaagccca 710



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>gb|AC025887.4|AC025887 Homo sapiens chromosome , clone RP11-386P4, complete sequence
          Length = 150655

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      aaaaacaagtctcaaaccaaaata 28
              ||||||||||||||| ||||||||
Sbjct: 109433 aaaaacaagtctcaagccaaaata 109456



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>gb|AC068919.4| Homo sapiens BAC clone RP11-340I19 from 2, complete sequence
          Length = 164350

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    agattttccaggagtaaaac 331
              ||||||||||||||||||||
Sbjct: 135664 agattttccaggagtaaaac 135645



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 8       aacaagtctcaaaccaaaatatac 31
               |||||||| |||||||||||||||
Sbjct: 1593583 aacaagtcacaaaccaaaatatac 1593560



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>emb|BX293537.10| Mouse DNA sequence from clone RP23-240M8 on chromosome X, complete
             sequence
          Length = 163726

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   atgaaatgttcaatgtcttc 271
             ||||||||||||||||||||
Sbjct: 17395 atgaaatgttcaatgtcttc 17376



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>gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24 of 83 of the complete
              sequence
          Length = 274289

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 143    tctatggaaacaacaactgacacaacaa 170
              ||||||| ||||||||||| ||||||||
Sbjct: 218175 tctatggcaacaacaactgccacaacaa 218202



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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    tctatggaaacaacaactga 162
              ||||||||||||||||||||
Sbjct: 181935 tctatggaaacaacaactga 181954



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>gb|AC004715.1|AC004715 Drosophila melanogaster DNA sequence (P1 DS00374 (D264)), complete
             sequence
          Length = 72732

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 143   tctatggaaacaacaactgacacaacaa 170
             ||||||| ||||||||||| ||||||||
Sbjct: 60079 tctatggcaacaacaactgccacaacaa 60106



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>emb|AL824711.14| Mouse DNA sequence from clone RP23-112I20 on chromosome X, complete
             sequence
          Length = 118199

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   actgacattcatataaacga 119
             ||||||||||||||||||||
Sbjct: 29722 actgacattcatataaacga 29703



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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 136     tcactcatctatggaaacaa 155
               ||||||||||||||||||||
Sbjct: 2008108 tcactcatctatggaaacaa 2008127



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>emb|AL772253.12| Mouse DNA sequence from clone RP23-101F14 on chromosome 2, complete
             sequence
          Length = 156657

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   gacaacagcacccaagccca 244
             ||||||||||||||||||||
Sbjct: 38246 gacaacagcacccaagccca 38227


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,288,200
Number of Sequences: 3902068
Number of extensions: 4288200
Number of successful extensions: 89560
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89485
Number of HSP's gapped (non-prelim): 75
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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