ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33d04 |
|---|---|
| Clone Library Name | barley_pub |
>YOY8_CAEEL (P34665) Hypothetical protein ZK652.8| Length = 171 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -2 Query: 381 CTSFCENCENYLQQHEGGAERKRSVLVPSEENVVQHEVLCAMVNNCSV 238 C S C + Q +EG E K+S V+HE LCA + CS+ Sbjct: 13 CISKCMDKSRNFQPNEGEEEMKKSW--------VRHEKLCAQLEACSL 52
>VN53_ROTHD (P35423) Nonstructural RNA-binding protein 53 (NS53) (NCVP2)| Length = 486 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%) Frame = -2 Query: 138 KRKPKVFYVCKKCRLIFITCCLVYHVC-------RCYLASQSL*MHINTF 10 KRK C+ L + CL+YHVC RC+L + + TF Sbjct: 37 KRKGWCLDCCQHTDLTYCQGCLIYHVCEWCSQYNRCFLDDDPHLLRMRTF 86
>RHBD2_HUMAN (Q9NX52) Rhomboid-related protein 2 (EC 3.4.21.105) (RRP2)| (Rhomboid-like protein 2) Length = 303 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -1 Query: 145 KEKKEAKSFLCLQKVQAYIYHMLSCISCMQMLLGISISM 29 ++++EA F+ V A + H+L + CMQ++LGI + M Sbjct: 115 EKREEAWRFISYMLVHAGVQHILGNL-CMQLVLGIPLEM 152
>HIPK2_HUMAN (Q9H2X6) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)| (hHIPk2) Length = 1198 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 285 VVQHEVLCAMVNNCSVL-YLERG 220 +VQHEVLC+M N VL +L RG Sbjct: 186 LVQHEVLCSMTNTYEVLEFLGRG 208
>HIPK2_MESAU (Q9WUM7) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)| (Mx-interacting protein kinase) (PKM) Length = 1168 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 285 VVQHEVLCAMVNNCSVL-YLERG 220 +VQHEVLC+M N VL +L RG Sbjct: 186 LVQHEVLCSMTNTYEVLEFLGRG 208
>HIPK2_MOUSE (Q9QZR5) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)| (Nuclear body-associated kinase 1) (Sialophorin tail-associated nuclear serine/threonine-protein kinase) Length = 1196 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 285 VVQHEVLCAMVNNCSVL-YLERG 220 +VQHEVLC+M N VL +L RG Sbjct: 186 LVQHEVLCSMTNTYEVLEFLGRG 208
>HIPK1_MOUSE (O88904) Homeodomain-interacting protein kinase 1 (EC 2.7.11.1)| (Protein kinase Myak) (Nuclear body-associated kinase 2) Length = 1210 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = -2 Query: 285 VVQHEVLCAMVNNCSVL-YLERG 220 +VQHE+LC+M N+ VL +L RG Sbjct: 177 LVQHEILCSMTNSYEVLEFLGRG 199
>HIPK1_HUMAN (Q86Z02) Homeodomain-interacting protein kinase 1 (EC 2.7.11.1)| Length = 1210 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = -2 Query: 285 VVQHEVLCAMVNNCSVL-YLERG 220 +VQHE+LC+M N+ VL +L RG Sbjct: 177 LVQHEILCSMTNSYEVLEFLGRG 199
>ZN614_HUMAN (Q8N883) Zinc finger protein 614| Length = 585 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 165 NKN*DPIFVVNSDSQNHPHPAPNTELNNYLPWHRALRVAPHFLHLELTHYAFVQHH 332 NKN I V+S Q H +PN L + + +HL TH+ VQ+H Sbjct: 75 NKNCPGIGKVDSHLQEH---SPNQRLLKSVQQCNGQNTLRNIVHLSKTHFPIVQNH 127
>POLN_SINDO (P27283) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2514 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -2 Query: 375 SFCE-NCENYLQQHEGGAERKRSVLVPSEENVVQHEVLCAMVNNCSV 238 +FC +Y ++HE A RS + + +N +Q+ ++ A NC+V Sbjct: 2066 TFCPAKLRSYPKRHEYRAPNIRSAVPSAMQNTLQNVLIAATKRNCNV 2112
>HIPK3_HUMAN (Q9H422) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)| (Homolog of protein kinase YAK1) (Fas-interacting serine/threonine-protein kinase) (FIST) (Androgen receptor-interacting nuclear protein kinase) (ANPK) Length = 1215 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 285 VVQHEVLCAMVNNCSVL-YLERG 220 +VQHEVLC+M N VL +L RG Sbjct: 184 LVQHEVLCSMKNTYEVLDFLGRG 206
>TA53_TREDE (P18164) 53 kDa membrane antigen A precursor (Protein A)| Length = 490 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 86 SHAVLYIMYADVTWHLNLYE 27 S LYI Y D+ W LN YE Sbjct: 164 SRGRLYIAYKDINWKLNRYE 183
>POLN_SINDV (P03317) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2512 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -2 Query: 375 SFCE-NCENYLQQHEGGAERKRSVLVPSEENVVQHEVLCAMVNNCSV 238 +FC +Y ++HE A RS + + +N +Q+ ++ A NC+V Sbjct: 2064 TFCPAKLRSYPKKHEYRAPNIRSAVPSAMQNTLQNVLIAATKRNCNV 2110
>HIPK3_MOUSE (Q9ERH7) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)| (Fas-interacting serine/threonine-protein kinase) (FIST) (Nuclear body-associated kinase 3) (Nbak3) (Androgen receptor-interacting nuclear protein kinase) (ANPK) Length = 1192 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 285 VVQHEVLCAMVNNCSVL-YLERG 220 +VQHEVLC+M N VL +L RG Sbjct: 184 LVQHEVLCSMKNTYEVLDFLGRG 206
>MURD_MANSM (Q65RY4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 439 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = -2 Query: 282 VQHEVLCAMVNNCSVLYLERGGGDSENQNSPQR*GLNFCWFKTENGKK--KRKPKVFYVC 109 + H A++N L E ++ Q S ++ W KTENGKK K K+ C Sbjct: 201 IYHHCQTAVINGEDPLTKEDDKQSAQQQVSFAENNADY-WLKTENGKKYLMAKDKLILAC 259 Query: 108 KKCRL 94 + +L Sbjct: 260 DEIKL 264
>UPPP2_BACLD (Q65FP0) Undecaprenyl-diphosphatase 2 (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase 2) (Bacitracin resistance protein 2) Length = 276 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -3 Query: 221 VGVILRIRIHHKDRVLIFVGLKQKM-ERKKGSQKFFMSAKSAGLYLSHAVLYIMYAD 54 +G IL + KDR+L +G+K+ + E +K + ++ + GL + AVL ++ D Sbjct: 58 LGSILAVAFVFKDRILNLLGMKKNITEEQKSGNRLSIAQIAVGL-VPAAVLGFLFED 113
>SPG20_MOUSE (Q8R1X6) Spartin| Length = 671 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 206 SESPPPRSKYRTEQLFTMAQSTSCCTTFSSLGTNTLRFRSAPP 334 +E+PP S E +T++ T FSS+G + R RS PP Sbjct: 168 AEAPPAYSPQAAEGHYTVSYGTDS-GEFSSVGEDFYRNRSQPP 209
>YL138_MIMIV (Q5UPK9) Hypothetical protein L138| Length = 883 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +3 Query: 192 VNSDSQNHPHPAPNTELNN 248 +N+ S NHP+ PN+E NN Sbjct: 342 LNNQSDNHPNNEPNSEPNN 360 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,551,972 Number of Sequences: 219361 Number of extensions: 1051886 Number of successful extensions: 3157 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3065 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3152 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
