ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ495778.1|HVU495778 Hordeum vulgare partial mRNA for putati... 676 0.0
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
3dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
4dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 46 0.083
5gb|AF269325.1|AF269325 Staphylococcus epidermidis strain SR1 clo... 46 0.083
6gb|AF270281.1|AF270281 Staphylococcus epidermidis strain SR1 clo... 46 0.083
7gb|AF269759.1|AF269759 Staphylococcus epidermidis strain SR1 clo... 46 0.083
8gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 46 0.083
9emb|AL450471.9| Human DNA sequence from clone RP11-74B21 on chro... 44 0.33
10emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on ch... 44 0.33
11gb|AC121332.4| Homo sapiens 3 BAC RP11-290D10 (Roswell Park Canc... 44 0.33
12gb|AC116424.1| Homo sapiens 3 BAC RP11-265F19 (Roswell Park Canc... 44 0.33
13gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, co... 42 1.3
14ref|NM_117413.2| Arabidopsis thaliana structural constituent of ... 42 1.3
15emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, ... 42 1.3
16emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC... 42 1.3
17gb|AC160463.5| Mus musculus chromosome 1, clone RP23-266D4, comp... 42 1.3
18dbj|AK129030.1| Mus musculus cDNA fis, clone TRACH3037897, weakl... 42 1.3
19gb|AC108103.2| Homo sapiens chromosome 5 clone RP11-197O8, compl... 42 1.3
20gb|AC150798.3| Medicago truncatula chromosome 2 BAC clone mth2-3... 42 1.3
21gb|AC026772.6| Homo sapiens chromosome 5 clone CTB-83D9, complet... 42 1.3
22emb|AL672215.11| Mouse DNA sequence from clone RP23-162B19 on ch... 42 1.3
23emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in... 42 1.3
24gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, com... 42 1.3
25dbj|AP006376.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.3
26dbj|AP004961.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.3
27dbj|AP004952.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.3
28ref|NM_192441.1| Oryza sativa (japonica cultivar-group), predic... 40 5.1
29gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete... 40 5.1
30gb|AC102613.7| Mus musculus chromosome 1, clone RP23-418C16, com... 40 5.1
31gb|AC154559.2| Mus musculus BAC clone RP23-399P3 from chromosome... 40 5.1
32gb|AF536971.1| Oryza sativa (japonica cultivar-group) putative p... 40 5.1
33gb|AF536960.1| Oryza sativa (japonica cultivar-group) high affin... 40 5.1
34emb|AL109843.25|HSDJ763G1 Human DNA sequence from clone RP4-763G... 40 5.1
35gb|AY974046.1| Zea mays inorganic phosphate transporter 6 mRNA, ... 40 5.1
36emb|AJ830010.1| Zea mays mRNA for phosphate transporter (pht1-6 ... 40 5.1
37gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Can... 40 5.1
38gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, comp... 40 5.1
39gb|AF493787.1| Oryza sativa phosphate transporter (Pht1-1) gene,... 40 5.1
40gb|AC091990.2| Homo sapiens chromosome 5 clone RP11-82D20, compl... 40 5.1
41gb|AC012629.9| Homo sapiens chromosome 5 clone CTD-2154B17, comp... 40 5.1
42dbj|AK021268.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 5.1
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
44gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, co... 40 5.1
45gb|AC154299.1| Mus musculus BAC clone RP23-402I16 from chromosom... 40 5.1
46emb|BX004980.8| Zebrafish DNA sequence from clone DKEY-15N5 in l... 40 5.1
47gb|AC016254.14|AC016254 Homo sapiens 12 BAC RP11-394C19 (Roswell... 40 5.1
48gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complet... 40 5.1
49dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
50emb|AJ331646.1|HSA331646 Homo sapiens genomic sequence surroundi... 40 5.1
51gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57... 40 5.1
52emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chr... 40 5.1
53gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.40... 40 5.1
54emb|CT009697.13| Mouse DNA sequence from clone RP23-131H5 on chr... 40 5.1
55emb|AL645600.11| Mouse DNA sequence from clone RP23-396N4 on chr... 40 5.1
56emb|AL606933.4| Mouse DNA sequence from clone RP23-168M5 on chro... 40 5.1 
>emb|AJ495778.1|HVU495778 Hordeum vulgare partial mRNA for putative MAPKK kinase
          Length = 908

 Score =  676 bits (341), Expect = 0.0
 Identities = 368/378 (97%), Gaps = 1/378 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   taactgaaagtattaatatgcattcatagagattgagatgccaagtaacatctgcataca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 taactgaaagtattaatatgcattcatagagattgagatgccaagtaacatctgcataca 833

                                                                       
Query: 65  tgatatacaagacagcatgtgataaatataagcctgcactttttgcagacataaaaaact 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 832 tgatatacaagacagcatgtgatagatataagcctgcactttttgcagacataaaaaact 773

                                                                       
Query: 125 tttggcttccnnnnnnnctttccattttctgttttaaaccaacaaaaattaagaccctat 184
           ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tttggcttcctttttttctttccattttctgttttaaaccaacaaaaattaagaccctat 713

                                                                       
Query: 185 ctttgtggtgaattctgattctcagaatcacccccaccccgctccaaatacagaactgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctttgtggtgaattctgattctcagaatcacccccaccccgctccaaatacagaactgaa 653

                                                                       
Query: 245 caattatttaccatggcacagagcacttcgtgttgcaccacattttcttcacttggaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caattatttaccatggcacagagcacttcgtgttgcaccacattttcttcacttggaact 593

                                                                       
Query: 305 aacacactacgctttcgttcagcaccaccttcgtgctgctgcagatagttctcacaattt 364
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aacacactacgctctcg-tcagcaccaccttcgtgctgctgcagatagttctcacaattt 534

                             
Query: 365 tcacaaaaggatgtgcag 382
           ||||||||||||||||||
Sbjct: 533 tcacaaaaggatgtgcag 516
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 2e-24
 Identities = 125/142 (88%), Gaps = 12/142 (8%)
 Strand = Plus / Plus

                                                                           
Query: 175     aagaccctatctttgtggtgaa-ttctgattctcagaatcacccccaccccgctccaaat 233
               |||| |||||||||||||| || |||||||||||||||||||        || |||||||
Sbjct: 6725703 aagatcctatctttgtggttaaattctgattctcagaatcac--------cgttccaaat 6725754

                                                                           
Query: 234     ac-agaactgaacaa-ttatttaccatggcacagagcacttcgtgttgcaccacattttc 291
                | |||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 6725755 tccagaactgaacaaattatttacgatggcacagagcacttcgtgttgcaccaca-tttc 6725813

                                     
Query: 292     ttcacttggaactaacacacta 313
               ||||||||||||||||||||||
Sbjct: 6725814 ttcacttggaactaacacacta 6725835
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score =  121 bits (61), Expect = 2e-24
 Identities = 125/142 (88%), Gaps = 12/142 (8%)
 Strand = Plus / Plus

                                                                         
Query: 175   aagaccctatctttgtggtgaa-ttctgattctcagaatcacccccaccccgctccaaat 233
             |||| |||||||||||||| || |||||||||||||||||||        || |||||||
Sbjct: 46756 aagatcctatctttgtggttaaattctgattctcagaatcac--------cgttccaaat 46807

                                                                         
Query: 234   ac-agaactgaacaa-ttatttaccatggcacagagcacttcgtgttgcaccacattttc 291
              | |||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 46808 tccagaactgaacaaattatttacgatggcacagagcacttcgtgttgcaccaca-tttc 46866

                                   
Query: 292   ttcacttggaactaacacacta 313
             ||||||||||||||||||||||
Sbjct: 46867 ttcacttggaactaacacacta 46888
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 211    atcacccccaccccgctccaaatacag 237
              |||||||||||||| ||||||||||||
Sbjct: 110887 atcacccccacccctctccaaatacag 110913
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>gb|AF269325.1|AF269325 Staphylococcus epidermidis strain SR1 clone step.1002b02 genomic
            sequence
          Length = 3818

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 211  atcacccccaccccgctccaaatacag 237
            |||||||||||||| ||||||||||||
Sbjct: 3115 atcacccccacccctctccaaatacag 3141
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>gb|AF270281.1|AF270281 Staphylococcus epidermidis strain SR1 clone step.3002b03 genomic
            sequence
          Length = 3800

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 211  atcacccccaccccgctccaaatacag 237
            |||||||||||||| ||||||||||||
Sbjct: 3084 atcacccccacccctctccaaatacag 3110
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>gb|AF269759.1|AF269759 Staphylococcus epidermidis strain SR1 clone step.1022e11 genomic
            sequence
          Length = 3825

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 211  atcacccccaccccgctccaaatacag 237
            |||||||||||||| ||||||||||||
Sbjct: 2603 atcacccccacccctctccaaatacag 2629
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 211    atcacccccaccccgctccaaatacag 237
              |||||||||||||| ||||||||||||
Sbjct: 122797 atcacccccacccctctccaaatacag 122823
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>emb|AL450471.9| Human DNA sequence from clone RP11-74B21 on chromosome X Contains a
            cytochrome b (mitochondrial) pseudogene, complete
            sequence
          Length = 50191

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 157  tttaaaccaacaaaaattaaga 178
            ||||||||||||||||||||||
Sbjct: 5383 tttaaaccaacaaaaattaaga 5362
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>emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on chromosome X, complete
              sequence
          Length = 187779

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 157    tttaaaccaacaaaaattaaga 178
              ||||||||||||||||||||||
Sbjct: 160640 tttaaaccaacaaaaattaaga 160661
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>gb|AC121332.4| Homo sapiens 3 BAC RP11-290D10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 28350

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 156  ttttaaaccaacaaaaattaag 177
            ||||||||||||||||||||||
Sbjct: 1632 ttttaaaccaacaaaaattaag 1611
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>gb|AC116424.1| Homo sapiens 3 BAC RP11-265F19 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 60398

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 156 ttttaaaccaacaaaaattaag 177
           ||||||||||||||||||||||
Sbjct: 374 ttttaaaccaacaaaaattaag 395
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>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence
          Length = 199727

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    ttcatagagattgagatgcca 47
             |||||||||||||||||||||
Sbjct: 85485 ttcatagagattgagatgcca 85465
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>ref|NM_117413.2| Arabidopsis thaliana structural constituent of cell wall AT4G13390
           mRNA, complete cds
          Length = 1509

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 204 tctcagaatcacccccacccc 224
           |||||||||||||||||||||
Sbjct: 190 tctcagaatcacccccacccc 210
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>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36
          Length = 199634

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   tctcagaatcacccccacccc 224
             |||||||||||||||||||||
Sbjct: 70748 tctcagaatcacccccacccc 70768
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>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence
             (ESSA project)
          Length = 95432

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   tctcagaatcacccccacccc 224
             |||||||||||||||||||||
Sbjct: 54769 tctcagaatcacccccacccc 54789
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>gb|AC160463.5| Mus musculus chromosome 1, clone RP23-266D4, complete sequence
          Length = 167352

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    ttcatagagattgagatgcca 47
             |||||||||||||||||||||
Sbjct: 12727 ttcatagagattgagatgcca 12707
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>dbj|AK129030.1| Mus musculus cDNA fis, clone TRACH3037897, weakly similar to Homo
            sapiens HpaII tiny  fragments locus 9C (HTF9C)
          Length = 3313

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  attttctgttttaaaccaaca 168
            |||||||||||||||||||||
Sbjct: 1353 attttctgttttaaaccaaca 1333
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>gb|AC108103.2| Homo sapiens chromosome 5 clone RP11-197O8, complete sequence
          Length = 151884

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   ttaaaccaacaaaaattaaga 178
             |||||||||||||||||||||
Sbjct: 61825 ttaaaccaacaaaaattaaga 61845
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>gb|AC150798.3| Medicago truncatula chromosome 2 BAC clone mth2-33b11, complete
             sequence
          Length = 120992

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   aaatacagaactgaacaatta 250
             |||||||||||||||||||||
Sbjct: 62637 aaatacagaactgaacaatta 62617
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>gb|AC026772.6| Homo sapiens chromosome 5 clone CTB-83D9, complete sequence
          Length = 132114

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   tatttaccatggcacagagca 269
             |||||||||||||||||||||
Sbjct: 35005 tatttaccatggcacagagca 34985
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>emb|AL672215.11| Mouse DNA sequence from clone RP23-162B19 on chromosome X, complete
             sequence
          Length = 196276

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 148   attttctgttttaaaccaaca 168
             |||||||||||||||||||||
Sbjct: 35275 attttctgttttaaaccaaca 35295
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>emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in linkage group 22,
              complete sequence
          Length = 159207

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 154    tgttttaaaccaacaaaaattaaga 178
              ||||||||||||| |||||||||||
Sbjct: 111600 tgttttaaaccaataaaaattaaga 111624
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>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence
          Length = 174902

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    ttcatagagattgagatgcca 47
             |||||||||||||||||||||
Sbjct: 38250 ttcatagagattgagatgcca 38270
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>dbj|AP006376.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT23D08, TM0220,
             complete sequence
          Length = 70687

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 286   attttcttcacttggaactaa 306
             |||||||||||||||||||||
Sbjct: 43797 attttcttcacttggaactaa 43817
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>dbj|AP004961.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT21P04, TM0140,
             complete sequence
          Length = 86648

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   attttcttcacttggaactaa 306
             |||||||||||||||||||||
Sbjct: 11174 attttcttcacttggaactaa 11154
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>dbj|AP004952.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT19C08, TM0125,
             complete sequence
          Length = 89551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 286   attttcttcacttggaactaa 306
             |||||||||||||||||||||
Sbjct: 30207 attttcttcacttggaactaa 30227
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>ref|NM_192441.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  cagcaccaccttcgtgctgc 343
            ||||||||||||||||||||
Sbjct: 1275 cagcaccaccttcgtgctgc 1294
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>gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete sequence
          Length = 185670

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      actgaaagtattaatatgca 26
              ||||||||||||||||||||
Sbjct: 118301 actgaaagtattaatatgca 118320
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>gb|AC102613.7| Mus musculus chromosome 1, clone RP23-418C16, complete sequence
          Length = 201275

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     atagagattgagatgccaag 49
              ||||||||||||||||||||
Sbjct: 142732 atagagattgagatgccaag 142751
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>gb|AC154559.2| Mus musculus BAC clone RP23-399P3 from chromosome 14, complete sequence
          Length = 198078

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   caccacattttcttcacttg 299
             ||||||||||||||||||||
Sbjct: 54347 caccacattttcttcacttg 54328
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>gb|AF536971.1| Oryza sativa (japonica cultivar-group) putative phosphate transporter
            OsPT11 gene, complete cds
          Length = 2080

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  cagcaccaccttcgtgctgc 343
            ||||||||||||||||||||
Sbjct: 1367 cagcaccaccttcgtgctgc 1386
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>gb|AF536960.1| Oryza sativa (japonica cultivar-group) high affinity phosphate
            transporter 11 mRNA, complete cds
          Length = 1668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  cagcaccaccttcgtgctgc 343
            ||||||||||||||||||||
Sbjct: 1275 cagcaccaccttcgtgctgc 1294
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>emb|AL109843.25|HSDJ763G1 Human DNA sequence from clone RP4-763G1 on chromosome 1p31.2-32.1
             Contains the 5' end of the gene for interleukin-23
             receptor (IL23R), complete sequence
          Length = 114713

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tttaaaccaacaaaaattaa 176
             ||||||||||||||||||||
Sbjct: 22173 tttaaaccaacaaaaattaa 22154
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>gb|AY974046.1| Zea mays inorganic phosphate transporter 6 mRNA, complete cds
          Length = 1985

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  cagcaccaccttcgtgctgc 343
            ||||||||||||||||||||
Sbjct: 1371 cagcaccaccttcgtgctgc 1390
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>emb|AJ830010.1| Zea mays mRNA for phosphate transporter (pht1-6 gene)
          Length = 1726

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  cagcaccaccttcgtgctgc 343
            ||||||||||||||||||||
Sbjct: 1336 cagcaccaccttcgtgctgc 1355
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>gb|AC025031.30| Homo sapiens 12 BAC RP11-474P2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 223675

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    caacaaaaattaagacccta 183
              ||||||||||||||||||||
Sbjct: 213288 caacaaaaattaagacccta 213307
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>gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, complete sequence
          Length = 170219

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tttaaaccaacaaaaattaa 176
             ||||||||||||||||||||
Sbjct: 59408 tttaaaccaacaaaaattaa 59389
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>gb|AF493787.1| Oryza sativa phosphate transporter (Pht1-1) gene, complete cds
          Length = 5543

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  cagcaccaccttcgtgctgc 343
            ||||||||||||||||||||
Sbjct: 4760 cagcaccaccttcgtgctgc 4779
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>gb|AC091990.2| Homo sapiens chromosome 5 clone RP11-82D20, complete sequence
          Length = 177470

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tttaaaccaacaaaaattaa 176
             ||||||||||||||||||||
Sbjct: 56634 tttaaaccaacaaaaattaa 56615
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>gb|AC012629.9| Homo sapiens chromosome 5 clone CTD-2154B17, complete sequence
          Length = 171603

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tttaaaccaacaaaaattaa 176
             ||||||||||||||||||||
Sbjct: 22015 tttaaaccaacaaaaattaa 21996
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>dbj|AK021268.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530005M16
           product:unclassifiable, full insert sequence
          Length = 1250

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 cacccccaccccgctccaaa 232
           ||||||||||||||||||||
Sbjct: 183 cacccccaccccgctccaaa 202
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 324      cagcaccaccttcgtgctgc 343
                ||||||||||||||||||||
Sbjct: 26718845 cagcaccaccttcgtgctgc 26718826
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>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    ttttaaaccaacaaaaatta 175
              ||||||||||||||||||||
Sbjct: 131287 ttttaaaccaacaaaaatta 131306
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>gb|AC154299.1| Mus musculus BAC clone RP23-402I16 from chromosome 13, complete sequence
          Length = 196855

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    tctcacaattttcacaaaag 373
              ||||||||||||||||||||
Sbjct: 129393 tctcacaattttcacaaaag 129374
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>emb|BX004980.8| Zebrafish DNA sequence from clone DKEY-15N5 in linkage group 14,
             complete sequence
          Length = 159333

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   ctgttttaaaccaacaaaaa 172
             ||||||||||||||||||||
Sbjct: 45959 ctgttttaaaccaacaaaaa 45940
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>gb|AC016254.14|AC016254 Homo sapiens 12 BAC RP11-394C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 164331

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   caacaaaaattaagacccta 183
             ||||||||||||||||||||
Sbjct: 16949 caacaaaaattaagacccta 16968
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>gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complete sequence
          Length = 83007

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   ttttgcagacataaaaaact 124
             ||||||||||||||||||||
Sbjct: 21911 ttttgcagacataaaaaact 21930
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>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0694A04
          Length = 141476

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cagcaccaccttcgtgctgc 343
             ||||||||||||||||||||
Sbjct: 65937 cagcaccaccttcgtgctgc 65918
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>emb|AJ331646.1|HSA331646 Homo sapiens genomic sequence surrounding NotI site, clone NR3-AE1R
          Length = 767

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 aatcacccccaccccgctcc 229
           ||||||||||||||||||||
Sbjct: 701 aatcacccccaccccgctcc 720
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>gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57 of 73 of the complete
             sequence
          Length = 271902

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     actgaaagtattaatatgca 26
             ||||||||||||||||||||
Sbjct: 60794 actgaaagtattaatatgca 60813
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>emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chromosome 14, complete
            sequence
          Length = 215157

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  caccacattttcttcacttg 299
            ||||||||||||||||||||
Sbjct: 3662 caccacattttcttcacttg 3643
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>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   ttttaaaccaacaaaaatta 175
             ||||||||||||||||||||
Sbjct: 73569 ttttaaaccaacaaaaatta 73588
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>emb|CT009697.13| Mouse DNA sequence from clone RP23-131H5 on chromosome 13, complete
              sequence
          Length = 225802

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    tctcacaattttcacaaaag 373
              ||||||||||||||||||||
Sbjct: 173907 tctcacaattttcacaaaag 173926
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>emb|AL645600.11| Mouse DNA sequence from clone RP23-396N4 on chromosome 11, complete
             sequence
          Length = 180286

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   gttgcaccacattttcttca 295
             ||||||||||||||||||||
Sbjct: 64828 gttgcaccacattttcttca 64847
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>emb|AL606933.4| Mouse DNA sequence from clone RP23-168M5 on chromosome 4, complete
             sequence
          Length = 197552

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   cacccccaccccgctccaaa 232
             ||||||||||||||||||||
Sbjct: 90056 cacccccaccccgctccaaa 90037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,179,252
Number of Sequences: 3902068
Number of extensions: 5179252
Number of successful extensions: 122379
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122184
Number of HSP's gapped (non-prelim): 189
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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