ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
2dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
3dbj|AK109644.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
4emb|X05167.1|HVLEU Barley gene for thiol protease aleurain 48 0.015
5emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23... 44 0.23
6emb|X58859.1|HVTHIOL Barley DNA with region homologous to thiol ... 44 0.23
7emb|AL356479.12| Human DNA sequence from clone RP11-48A6 on chro... 40 3.6
8gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 40 3.6
9gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, com... 40 3.6
10emb|BX908803.7| Zebrafish DNA sequence from clone CH211-13C14 in... 40 3.6
11gb|AC096538.2| Homo sapiens chromosome 1 clone RP11-146P11, comp... 40 3.6
12gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complet... 40 3.6
13gb|AC073578.17| Homo sapiens 12 BAC RP11-897M7 (Roswell Park Can... 40 3.6
14dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.6
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.6
16gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.6

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 229      cggcgtcccgcatgacgggccgcttgcctggcgccatggcgcagcagg 276
                ||||||||| |||| |||||| |||||| |||||||||||||||||||
Sbjct: 25562850 cggcgtccctcatggcgggcctcttgccgggcgccatggcgcagcagg 25562897



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>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0523F01
          Length = 146419

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 229   cggcgtcccgcatgacgggccgcttgcctggcgccatggcgcagcagg 276
             ||||||||| |||| |||||| |||||| |||||||||||||||||||
Sbjct: 81167 cggcgtccctcatggcgggcctcttgccgggcgccatggcgcagcagg 81214



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>dbj|AK109644.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-G12, full
           insert sequence
          Length = 1507

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 229 cggcgtcccgcatgacgggccgcttgcctggcgccatggcgcagcagg 276
           ||||||||| |||| |||||| |||||| |||||||||||||||||||
Sbjct: 705 cggcgtccctcatggcgggcctcttgccgggcgccatggcgcagcagg 752



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>emb|X05167.1|HVLEU Barley gene for thiol protease aleurain
          Length = 5372

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 220  ggagcgcggcggcgtcccgcatga 243
            ||||||||||||||||||||||||
Sbjct: 2107 ggagcgcggcggcgtcccgcatga 2084



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>emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23 on chromosome Xq13.1-21.1
             Contains the TBX22 gene for T-box 22, complete sequence
          Length = 132029

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 36    aaattagtgacaacaaatctacaaaa 61
             |||||||||||||||||| |||||||
Sbjct: 26499 aaattagtgacaacaaatatacaaaa 26524



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>emb|X58859.1|HVTHIOL Barley DNA with region homologous to thiol protease (aleurain)
          Length = 3333

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 220 ggagcgcggcggcgtcccgcat 241
           ||||||||||||||||||||||
Sbjct: 946 ggagcgcggcggcgtcccgcat 925



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>emb|AL356479.12| Human DNA sequence from clone RP11-48A6 on chromosome 1p21.3-22.3
             Contains the 5' end of a novel gene, complete sequence
          Length = 128142

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aaaaattagtgacaacaaat 53
             ||||||||||||||||||||
Sbjct: 49414 aaaaattagtgacaacaaat 49395



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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152737

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaaattagtgacaacaaat 53
             ||||||||||||||||||||
Sbjct: 53760 aaaaattagtgacaacaaat 53779



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>gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, complete sequence
          Length = 163225

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    atctacaaaagaggctggct 71
             ||||||||||||||||||||
Sbjct: 12630 atctacaaaagaggctggct 12649



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>emb|BX908803.7| Zebrafish DNA sequence from clone CH211-13C14 in linkage group 3,
              complete sequence
          Length = 186802

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     acaacaaatctacaaaagaggctg 68
              ||||||||||||||||| ||||||
Sbjct: 117509 acaacaaatctacaaaaaaggctg 117532



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>gb|AC096538.2| Homo sapiens chromosome 1 clone RP11-146P11, complete sequence
          Length = 173048

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aaaaattagtgacaacaaat 53
             ||||||||||||||||||||
Sbjct: 26196 aaaaattagtgacaacaaat 26177



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>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aaaaattagtgacaacaaat 53
             ||||||||||||||||||||
Sbjct: 76188 aaaaattagtgacaacaaat 76169



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>gb|AC073578.17| Homo sapiens 12 BAC RP11-897M7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 121698

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     aaaattagtgacaacaaatc 54
              ||||||||||||||||||||
Sbjct: 100758 aaaattagtgacaacaaatc 100777



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 217     cgaggagcgcggcggcgtcccgca 240
               |||||||||||||||| |||||||
Sbjct: 3024366 cgaggagcgcggcggcatcccgca 3024343



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     cgaggagcgcggcggcgtcc 236
               ||||||||||||||||||||
Sbjct: 2546687 cgaggagcgcggcggcgtcc 2546706



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     cgaggagcgcggcggcgtcc 236
               ||||||||||||||||||||
Sbjct: 2131803 cgaggagcgcggcggcgtcc 2131822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,661,926
Number of Sequences: 3902068
Number of extensions: 1661926
Number of successful extensions: 30498
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30242
Number of HSP's gapped (non-prelim): 256
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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