ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 37 0.015
2SRD34_CAEEL (Q19975) Serpentine receptor class delta-34 (Protein... 30 2.3
3ENV_GALV (P21415) Env polyprotein precursor [Contains: Coat prot... 29 5.2
4YBD1_SCHPO (O42925) Hypothetical protein C16C6.01c in chromosome II 28 8.8

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -1

Query: 413 MLNVALLCTNAAPTLRPKMSNAVSLLEG 330
           ++ VALLCT ++P  RPKMS  V +LEG
Sbjct: 538 LIQVALLCTQSSPMERPKMSEVVRMLEG 565



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>SRD34_CAEEL (Q19975) Serpentine receptor class delta-34 (Protein srd-34)|
          Length = 339

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 134 FDVFQICTPVRITRAMPLCLFWQYNVATNIKTPNSTKN 21
           FD FQ+      + A+P  LF++Y   TNI   N TKN
Sbjct: 100 FDFFQLVFDAS-SFAIPATLFYKYTKVTNINMKNITKN 136



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>ENV_GALV (P21415) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 667

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 143 SQNVSGYHLHLKMTSH--WCCYMMLVPLCSGSHLDFPRSFCV 262
           S N SG H +L  ++H  W C   L P  S S  +  R FC+
Sbjct: 419 SINSSGDHQYLLPSNHSWWACSTGLTPCLSTSVFNQTRDFCI 460



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>YBD1_SCHPO (O42925) Hypothetical protein C16C6.01c in chromosome II|
          Length = 473

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 15  TCILSRIRCFYVSSY 59
           TC+L + RCFYV+SY
Sbjct: 184 TCVLVQSRCFYVNSY 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,581,634
Number of Sequences: 219361
Number of extensions: 1041255
Number of successful extensions: 2193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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