ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
2dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
3dbj|AK066121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
4gb|AY112812.1| Oryza sativa (indica cultivar-group) J12.2 small ... 98 3e-17
5gb|AY112813.1| Oryza sativa (indica cultivar-group) J12.1 small ... 82 2e-12
6gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 48 0.023
7gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, com... 48 0.023
8emb|AJ586512.1| Fagus sylvatica partial pk9 mRNA for receptor-li... 46 0.091
9emb|CT030167.8| Mouse DNA sequence from clone RP23-333E24 on chr... 42 1.4
10emb|AL808114.11| Mouse DNA sequence from clone RP23-146A17 on ch... 42 1.4
11emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on ch... 42 1.4
12ref|XM_420179.1| PREDICTED: Gallus gallus similar to Nuclear por... 40 5.6
13gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome... 40 5.6
14emb|BX510945.13| Zebrafish DNA sequence from clone CH211-59D17 i... 40 5.6
15emb|BX294129.10| Zebrafish DNA sequence from clone DKEYP-34H12 i... 40 5.6
16emb|BX629349.6| Zebrafish DNA sequence from clone CH211-53P9 in ... 40 5.6
17gb|AC096509.9| Homo sapiens X BAC RP11-454K24 (Roswell Park Canc... 40 5.6
18emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in... 40 5.6
19emb|BX571800.8| Zebrafish DNA sequence from clone DKEY-29B15 in ... 40 5.6
20emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 i... 40 5.6
21dbj|AK077907.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 5.6
22gb|AC008102.18| Homo sapiens chromosome 11 clone bac41i21 map 11... 40 5.6
23emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in... 40 5.6
24emb|AL953864.6| Zebrafish DNA sequence from clone DKEY-32E6 in l... 40 5.6
25emb|AL157858.5|CNS01RGA Human chromosome 14 DNA sequence BAC R-1... 40 5.6
26dbj|AP000822.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.6
27emb|CR956638.22| Pig DNA sequence from clone CH242-204B8 on chro... 40 5.6
28emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, c... 40 5.6
29emb|CR407545.9| Zebrafish DNA sequence from clone CH211-197E20 i... 40 5.6
30emb|AL136338.4|CNS01DW5 Human chromosome 14 DNA sequence BAC C-2... 40 5.6 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  123 bits (62), Expect = 5e-25
 Identities = 222/274 (81%), Gaps = 6/274 (2%)
 Strand = Plus / Minus

                                                                            
Query: 152      gtctcaggctaccatctacatctaaagatgacgagtcactggtgttgttatatgatgctt 211
                |||||||||||||| | | |||||||||||| || ||| |||||||| |  |||||||||
Sbjct: 10740823 gtctcaggctaccagcaatatctaaagatgatgactcattggtgttgctggatgatgctt 10740764

                                                                            
Query: 212      gtgccg---ttatgctctggctct---cacttggattttcccagaagtttctgcgtagac 265
                |||| |   | ||||| |||||||   ||||| |  ||| ||||||||| |||||  |||
Sbjct: 10740763 gtgctgcagtcatgctttggctctgatcacttagtgtttgccagaagttcctgcgctgac 10740704

                                                                            
Query: 266      cacttgagctcaggctgtttgcagcaaggctgagttctgataggaagggttgcagggggg 325
                | |||||||||||||||||||||||||||||||| ||||| || || ||||| || ||  
Sbjct: 10740703 cgcttgagctcaggctgtttgcagcaaggctgaggtctgacagaaatggttgaagtggta 10740644

                                                                            
Query: 326      tatggccttcaagaaggctcacagcgttggacatctttggtctaagagtcggtgctgcgt 385
                | || || ||||| ||||||| | | |||| |||||||||||| || || |||||||| |
Sbjct: 10740643 tgtgcccctcaagcaggctcaaaactttggtcatctttggtctcagtgttggtgctgcat 10740584

                                                  
Query: 386      tggtgcataagagagccacgttcagcatcaggag 419
                ||||||| | ||| || || |||||||| |||||
Sbjct: 10740583 tggtgcacaggagggcaacattcagcatgaggag 10740550



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                            
Query: 173      ctaaagatgacgagtcactggtgttgttatatgatgcttgtgccgttatgctctggctct 232
                ||||||| || || ||| |||||||| | |||||||||||||| || || || |||||||
Sbjct: 10757069 ctaaagacgatgattcattggtgttgctgtatgatgcttgtgctgtcatactttggctct 10757010

                            
Query: 233      cacttggatttt 244
                ||||||| ||||
Sbjct: 10757009 cacttgggtttt 10756998



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                            
Query: 290      caaggctgagttctgataggaagggttgcaggggggtatggccttcaagaaggctcacag 349
                |||||||||| ||||| |  || |||||||| || ||||| || ||||| ||||||||  
Sbjct: 10756995 caaggctgaggtctgacaaaaatggttgcagtggtgtatgcccctcaagcaggctcacta 10756936

                                   
Query: 350      cgttggacatctttggtct 368
                | |||||||||||||||||
Sbjct: 10756935 ctttggacatctttggtct 10756917
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score =  123 bits (62), Expect = 5e-25
 Identities = 222/274 (81%), Gaps = 6/274 (2%)
 Strand = Plus / Minus

                                                                         
Query: 152   gtctcaggctaccatctacatctaaagatgacgagtcactggtgttgttatatgatgctt 211
             |||||||||||||| | | |||||||||||| || ||| |||||||| |  |||||||||
Sbjct: 77441 gtctcaggctaccagcaatatctaaagatgatgactcattggtgttgctggatgatgctt 77382

                                                                         
Query: 212   gtgccg---ttatgctctggctct---cacttggattttcccagaagtttctgcgtagac 265
             |||| |   | ||||| |||||||   ||||| |  ||| ||||||||| |||||  |||
Sbjct: 77381 gtgctgcagtcatgctttggctctgatcacttagtgtttgccagaagttcctgcgctgac 77322

                                                                         
Query: 266   cacttgagctcaggctgtttgcagcaaggctgagttctgataggaagggttgcagggggg 325
             | |||||||||||||||||||||||||||||||| ||||| || || ||||| || ||  
Sbjct: 77321 cgcttgagctcaggctgtttgcagcaaggctgaggtctgacagaaatggttgaagtggta 77262

                                                                         
Query: 326   tatggccttcaagaaggctcacagcgttggacatctttggtctaagagtcggtgctgcgt 385
             | || || ||||| ||||||| | | |||| |||||||||||| || || |||||||| |
Sbjct: 77261 tgtgcccctcaagcaggctcaaaactttggtcatctttggtctcagtgttggtgctgcat 77202

                                               
Query: 386   tggtgcataagagagccacgttcagcatcaggag 419
             ||||||| | ||| || || |||||||| |||||
Sbjct: 77201 tggtgcacaggagggcaacattcagcatgaggag 77168



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                         
Query: 173   ctaaagatgacgagtcactggtgttgttatatgatgcttgtgccgttatgctctggctct 232
             ||||||| || || ||| |||||||| | |||||||||||||| || || || |||||||
Sbjct: 93687 ctaaagacgatgattcattggtgttgctgtatgatgcttgtgctgtcatactttggctct 93628

                         
Query: 233   cacttggatttt 244
             ||||||| ||||
Sbjct: 93627 cacttgggtttt 93616



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                         
Query: 290   caaggctgagttctgataggaagggttgcaggggggtatggccttcaagaaggctcacag 349
             |||||||||| ||||| |  || |||||||| || ||||| || ||||| ||||||||  
Sbjct: 93613 caaggctgaggtctgacaaaaatggttgcagtggtgtatgcccctcaagcaggctcacta 93554

                                
Query: 350   cgttggacatctttggtct 368
             | |||||||||||||||||
Sbjct: 93553 ctttggacatctttggtct 93535
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>dbj|AK066121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057L06, full
            insert sequence
          Length = 3370

 Score =  123 bits (62), Expect = 5e-25
 Identities = 222/274 (81%), Gaps = 6/274 (2%)
 Strand = Plus / Minus

                                                                        
Query: 152  gtctcaggctaccatctacatctaaagatgacgagtcactggtgttgttatatgatgctt 211
            |||||||||||||| | | |||||||||||| || ||| |||||||| |  |||||||||
Sbjct: 3175 gtctcaggctaccagcaatatctaaagatgatgactcattggtgttgctggatgatgctt 3116

                                                                        
Query: 212  gtgccg---ttatgctctggctct---cacttggattttcccagaagtttctgcgtagac 265
            |||| |   | ||||| |||||||   ||||| |  ||| ||||||||| |||||  |||
Sbjct: 3115 gtgctgcagtcatgctttggctctgatcacttagtgtttgccagaagttcctgcgctgac 3056

                                                                        
Query: 266  cacttgagctcaggctgtttgcagcaaggctgagttctgataggaagggttgcagggggg 325
            | |||||||||||||||||||||||||||||||| ||||| || || ||||| || ||  
Sbjct: 3055 cgcttgagctcaggctgtttgcagcaaggctgaggtctgacagaaatggttgaagtggta 2996

                                                                        
Query: 326  tatggccttcaagaaggctcacagcgttggacatctttggtctaagagtcggtgctgcgt 385
            | || || ||||| ||||||| | | |||| |||||||||||| || || |||||||| |
Sbjct: 2995 tgtgcccctcaagcaggctcaaaactttggtcatctttggtctcagtgttggtgctgcat 2936

                                              
Query: 386  tggtgcataagagagccacgttcagcatcaggag 419
            ||||||| | ||| || || |||||||| |||||
Sbjct: 2935 tggtgcacaggagggcaacattcagcatgaggag 2902
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>gb|AY112812.1| Oryza sativa (indica cultivar-group) J12.2 small nucleolar RNA,
           complete sequence
          Length = 158

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 125/149 (83%), Gaps = 6/149 (4%)
 Strand = Plus / Plus

                                                                       
Query: 163 ccatctacatctaaagatgacgagtcactggtgttgttatatgatgcttgtgccgtt--- 219
           ||||| |||||||||||||| || ||| |||||||| || ||||||||||||| | |   
Sbjct: 1   ccatcaacatctaaagatgatgactcattggtgttgctagatgatgcttgtgctgctgtc 60

                                                                       
Query: 220 atgctctggctct---cacttggattttcccagaagtttctgcgtagaccacttgagctc 276
           ||||| |||||||   ||||| |  ||| ||||||||| |||||  |||| |||||||||
Sbjct: 61  atgctttggctctgatcacttagtgtttgccagaagttcctgcgctgaccgcttgagctc 120

                                        
Query: 277 aggctgtttgcagcaaggctgagttctga 305
           ||||||||||||||||||||||| |||||
Sbjct: 121 aggctgtttgcagcaaggctgaggtctga 149
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>gb|AY112813.1| Oryza sativa (indica cultivar-group) J12.1 small nucleolar RNA,
           complete sequence
          Length = 158

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 117/141 (82%), Gaps = 6/141 (4%)
 Strand = Plus / Plus

                                                                       
Query: 171 atctaaagatgacgagtcactggtgttgttatatgatgcttgtgccg---ttatgctctg 227
           |||||||||||| || ||| |||||||| |  ||||||||||||| |   | ||||| ||
Sbjct: 9   atctaaagatgatgactcattggtgttgctggatgatgcttgtgctgcagtcatgctttg 68

                                                                       
Query: 228 gctct---cacttggattttcccagaagtttctgcgtagaccacttgagctcaggctgtt 284
           |||||   ||||| |  ||| ||||||||| |||||  |||| |||||||||||||||||
Sbjct: 69  gctctgatcacttagtgtttgccagaagttcctgcgctgaccgcttgagctcaggctgtt 128

                                
Query: 285 tgcagcaaggctgagttctga 305
           ||||||||||||||| |||||
Sbjct: 129 tgcagcaaggctgaggtctga 149
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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 14    tacttgcattcttagtagaattaggtgt 41
             ||||||||||||||||||||||| ||||
Sbjct: 43412 tacttgcattcttagtagaattatgtgt 43439
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>gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, complete sequence
          Length = 160733

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 14     tacttgcattcttagtagaattaggtgt 41
              ||||||||||||||||||||||| ||||
Sbjct: 113996 tacttgcattcttagtagaattatgtgt 114023
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>emb|AJ586512.1| Fagus sylvatica partial pk9 mRNA for receptor-like protein kinase
          Length = 653

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 363 tggtctaagagtcggtgctgcgttggtgcataagagagccacgttcagcat 413
           |||||||||||| || |  | ||||||||| |||||||||| |||||||||
Sbjct: 413 tggtctaagagtgggagaggggttggtgcacaagagagccaagttcagcat 363
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>emb|CT030167.8| Mouse DNA sequence from clone RP23-333E24 on chromosome 13, complete
             sequence
          Length = 192930

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 77    gacatagtggcatagccctag 97
             |||||||||||||||||||||
Sbjct: 34458 gacatagtggcatagccctag 34478
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>emb|AL808114.11| Mouse DNA sequence from clone RP23-146A17 on chromosome 4, complete
             sequence
          Length = 41153

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   ggctctcacttggattttccc 247
             |||||||||||||||||||||
Sbjct: 39832 ggctctcacttggattttccc 39852
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>emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on chromosome 4, complete
           sequence
          Length = 209764

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 227 ggctctcacttggattttccc 247
           |||||||||||||||||||||
Sbjct: 679 ggctctcacttggattttccc 699
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>ref|XM_420179.1| PREDICTED: Gallus gallus similar to Nuclear pore glycoprotein p62 (62
            kDa nucleoporin) (LOC422183), mRNA
          Length = 2294

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  tgcagcaaggctgagttctg 304
            ||||||||||||||||||||
Sbjct: 1721 tgcagcaaggctgagttctg 1702
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>gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome 13, complete sequence
          Length = 192969

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 244   tcccagaagtttctgcgtagacca 267
             ||||||||||||||| ||||||||
Sbjct: 53053 tcccagaagtttctgtgtagacca 53076
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>emb|BX510945.13| Zebrafish DNA sequence from clone CH211-59D17 in linkage group 21,
             complete sequence
          Length = 202152

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 56990 cgagtcactggtgttgttat 57009
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>emb|BX294129.10| Zebrafish DNA sequence from clone DKEYP-34H12 in linkage group 13,
              complete sequence
          Length = 156627

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 143830 cgagtcactggtgttgttat 143849
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>emb|BX629349.6| Zebrafish DNA sequence from clone CH211-53P9 in linkage group 5,
             complete sequence
          Length = 142044

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 58540 cgagtcactggtgttgttat 58559
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>gb|AC096509.9| Homo sapiens X BAC RP11-454K24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 106440

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    ttcttagtagaattaggtgttttt 45
             |||||||||||||| |||||||||
Sbjct: 39633 ttcttagtagaattgggtgttttt 39610
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>emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in linkage group 18,
              complete sequence
          Length = 152387

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 112248 cgagtcactggtgttgttat 112229
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>emb|BX571800.8| Zebrafish DNA sequence from clone DKEY-29B15 in linkage group 5, complete
              sequence
          Length = 195520

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 133315 cgagtcactggtgttgttat 133296
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>emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 in linkage group 23,
             complete sequence
          Length = 183357

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 52815 cgagtcactggtgttgttat 52834
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>dbj|AK077907.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030433H05
            product:unclassifiable, full insert sequence
          Length = 2747

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  tcccagaagtttctgcgtagacca 267
            ||||||||||||||| ||||||||
Sbjct: 1235 tcccagaagtttctgtgtagacca 1258
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>gb|AC008102.18| Homo sapiens chromosome 11 clone bac41i21 map 11q13, complete sequence
          Length = 126787

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   gtagaccacttgagctcagg 279
             ||||||||||||||||||||
Sbjct: 71333 gtagaccacttgagctcagg 71352
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>emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in linkage group 3,
             complete sequence
          Length = 189210

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 24327 cgagtcactggtgttgttat 24308
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>emb|AL953864.6| Zebrafish DNA sequence from clone DKEY-32E6 in linkage group 23, complete
              sequence
          Length = 249608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 136743 cgagtcactggtgttgttat 136762
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>emb|AL157858.5|CNS01RGA Human chromosome 14 DNA sequence BAC R-187A6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188327

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    gtagaccacttgagctcagg 279
              ||||||||||||||||||||
Sbjct: 187115 gtagaccacttgagctcagg 187134
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>dbj|AP000822.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675B4, complete
            sequence
          Length = 94501

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  gtagaccacttgagctcagg 279
            ||||||||||||||||||||
Sbjct: 8492 gtagaccacttgagctcagg 8473
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>emb|CR956638.22| Pig DNA sequence from clone CH242-204B8 on chromosome 17, complete
            sequence
          Length = 94293

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  tacagatctgaaatacatca 132
            ||||||||||||||||||||
Sbjct: 2736 tacagatctgaaatacatca 2717
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>emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, complete sequence
          Length = 189040

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 126560 cgagtcactggtgttgttat 126541
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>emb|CR407545.9| Zebrafish DNA sequence from clone CH211-197E20 in linkage group 25,
             complete sequence
          Length = 103187

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 48475 cgagtcactggtgttgttat 48456
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>emb|AL136338.4|CNS01DW5 Human chromosome 14 DNA sequence BAC C-2022M23 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 143177

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  gtagaccacttgagctcagg 279
            ||||||||||||||||||||
Sbjct: 7120 gtagaccacttgagctcagg 7139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,367,012
Number of Sequences: 3902068
Number of extensions: 3367012
Number of successful extensions: 68633
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68559
Number of HSP's gapped (non-prelim): 71
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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