>CCMA_RICPR (Q9ZCF9) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 197

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = -3

Query: 192 YLRHSFPSTLDHTIKKDLEVRTWMDIRSKTEGIVVEIWEFVLDELIDEAVFDL 34
           Y+ H+    L+ T+ ++L+   W +I + TE +   I  F LD L+DE  ++L
Sbjct: 76  YIGHNLGLKLEMTVFENLKF--WSEIYNSTETVPAAIHYFKLDYLLDEKCYNL 126

>SYI_STAS1 (Q49WX5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 916

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = -3

Query: 321 EALTEIQERYFRLSSWLSFLKHDIRPPPIGEDLVAE-----VDKYVDDYLRHSFPSTLDH 157
           E L +  + Y ++ + L F+  ++       D +AE     VDKY+ + LR    +TLDH
Sbjct: 636 EILKQSSDVYRKIRNTLRFMLGNVSDYNPATDAIAEKDLLEVDKYLLNRLREFTANTLDH 695

Query: 156 TIKKDLEVRTWMDIRSKTEGIV-VEIWEFVLD 64
               D     ++DI  + +  + VE+  F LD
Sbjct: 696 YDNYD-----YLDIYQEVQNFINVELSNFYLD 722

>CR034_MOUSE (Q8CDV0) Protein C18orf34 homolog|
          Length = 866

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
 Frame = -3

Query: 381 DLPNQGDQIDDLKILFDCIC--------EALTEIQERYFRLSSW---LSFLKHDIRPPPI 235
           +L N    +DDLK LFD  C        E L      Y    +W   LS +  D +   I
Sbjct: 384 ELENLKKTVDDLKRLFDQYCWRQRKYENEYLEAFSNFYSLKKTWDIELSNVSKDAKDLTI 443

Query: 234 GEDLVAEVDKYVDDYLRHSFPSTLDHTIKK----DLEVRTWMDIRSKTEGIVVEIWE 76
             +  +E +K +   ++ S    ++ +IKK    + EV T+++++ K    + ++++
Sbjct: 444 VYEAQSEENKRIQSEIQ-SITDDIEESIKKTAEMEEEVHTFVEMKMKNNNYLKQLYK 499

>PTPS_RAT (P27213) 6-pyruvoyl tetrahydrobiopterin synthase precursor (EC|
           4.2.3.12) (PTPS) (PTP synthase)
          Length = 144

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 195 DYLRHSFPSTLDHTIKKDLEVRTWMDIRSKTEGIVVEIWE 76
           +Y+  +    LDH    DL+V  + D+ S TE + V IWE
Sbjct: 77  EYMEEAIMKPLDHK-NLDLDVPYFADVVSTTENVAVYIWE 115

>HRCA_THETN (Q8RB70) Heat-inducible transcription repressor hrcA|
          Length = 343

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 270 SFLKHDIRPPP-IGEDLVAEVDKYVDDYLRHSFPSTLDHTIKK 145
           +F+K D+ PPP + E+++AE D+ V  Y +     T   T+ K
Sbjct: 82  NFMKEDLSPPPRVREEVIAEFDEIVKKYAKILADITHHTTVAK 124

>CCMA_RICTY (Q68VV5) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 197

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -3

Query: 192 YLRHSFPSTLDHTIKKDLEVRTWMDIRSKTEGIVVEIWEFVLDELIDEAVFDL 34
           Y+ H+    L+ T+ ++L+   W +I + TE +   I  F LD L+D+  ++L
Sbjct: 76  YIGHNLGIKLEMTVFENLKF--WSEIYNSTETVQAAIHYFKLDYLLDKKCYNL 126

>TRX_DROME (P20659) Protein trithorax|
          Length = 3726

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 188  R*SSTYLSTSATRSSPIGGGLMSCLRNDNQEESLKYLSW 304
            R S+T L      S+P+   ++S  RN +Q + LK L+W
Sbjct: 2097 RNSNTSLGNGWPASNPVEDAMLSAARNSSQVQMLKTLAW 2135

>HELS_THEAC (Q9HJX7) Putative ski2-type helicase (EC 3.6.1.-)|
          Length = 674

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -3

Query: 318 ALTEIQERYFRLSSWL--SFLKHDIRPPPIGEDLVAEVDKYVDDYLRH--SFPSTLDHTI 151
           AL+        L+SWL  S +K D RP P+   ++     Y+D   R   S    +  T+
Sbjct: 174 ALSATVSNAMELASWLDASLIKSDFRPVPLKTGILYRDQLYLDGKRRSGVSINQIIRETV 233

Query: 150 KKDLEVRTWMDIRSKTE 100
           + + +V  ++  R K E
Sbjct: 234 EDNGQVLMFVSSRKKAE 250

>RNZ_THEVO (Q979A8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 304

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 396 PCPVEDLPNQGDQIDDLKILFDC 328
           P P+  +P  G QIDD+  LFDC
Sbjct: 17  PTPIRAMPGVGIQIDDVFNLFDC 39

>AMPN_LACDL (P37896) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminopeptidase)|
           (Lys-AP) (Alanine aminopeptidase)
          Length = 842

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
 Frame = -3

Query: 378 LPNQGDQIDDLKI--------LFDCICEALTEIQERYFRLSSWLSFLKHDIRPPPIGEDL 223
           LP  G+  +D++         L+    ++  +  E Y   +  L+ L  DIRP      L
Sbjct: 618 LPKAGESDEDIQTRPYVLSASLYGRNADSEKQAHEIYVEYADKLAELSADIRP----YVL 673

Query: 222 VAEVDKY----VDDYLRHSFPSTLDHTIKKDLEVRTWMDIRSKTEGIVVEI 82
           + EV+ Y    + D L   + +T D + K DLE      ++SK EG + +I
Sbjct: 674 INEVENYGSSELTDKLIGLYQATSDPSFKMDLEAAI---VKSKDEGELKKI 721

>PTPS_MOUSE (Q9R1Z7) 6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12)|
           (PTPS) (PTP synthase)
          Length = 144

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 195 DYLRHSFPSTLDHTIKKDLEVRTWMDIRSKTEGIVVEIWE 76
           +Y+  +    LDH    DL+V  + D  S TE + V IWE
Sbjct: 77  EYMEEAIMKPLDHK-NLDLDVPYFADAVSTTENVAVYIWE 115

>YQ52_SCHPO (O74419) Hypothetical protein C162.02c in chromosome III|
          Length = 981

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 336 FDCICEALTEIQERYFRLSSWLSFLKHDI 250
           F CICE++  ++  +  L  WL  L+ D+
Sbjct: 897 FACICESMKNVKLDFVTLEDWLKALEKDV 925

>SYC_MYCGE (P47495) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 428

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -3

Query: 291 FRLSSWLSFLKHDIRPPPIGEDLVAEVDKYVDDYLRHSFPSTLDHTIKKDLEV-RTWMDI 115
           FR+  W+ + KH + P  + + L+ + +  +               I K L V RTW+  
Sbjct: 273 FRVLRWIFYQKHYLHPIDLNQSLIEKANNDI-------------QRIAKTLNVARTWLVY 319

Query: 114 RSKTEGIVVEIWEFVLDELIDEAVF 40
             ++E I  + ++ V   L+D   F
Sbjct: 320 SEQSELISPKQYDPVFSALLDNLNF 344

>ELF1_SCHPO (O14134) mRNA export factor elf1|
          Length = 1057

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 339 LFDCICEALTEI-QERYFRLSSWLSFLKHDIRPPPIGEDLVAEVDKYVDDYLRHSFPSTL 163
           + D +C+AL  + +   F    W S L      P +GE+L +++   + D L H+F  +L
Sbjct: 371 IIDYVCDALAALYKSNNFDKDKWTSQLGVLYLSPLVGEELASQISSKIYDDL-HAFYKSL 429

Query: 162 D 160
           +
Sbjct: 430 N 430

>RNZ_THEAC (Q9HJ19) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 307

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 396 PCPVEDLPNQGDQIDDLKILFDC 328
           P P+  +P  G +IDD+  LFDC
Sbjct: 17  PTPLRAMPGVGVKIDDVLNLFDC 39

>SYI_STAHJ (Q4L5P4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 916

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
 Frame = -3

Query: 321 EALTEIQERYFRLSSWLSFLK---HDIRPPP--IGEDLVAEVDKYVDDYLRHSFPSTLDH 157
           E L +  + Y ++ + L F+    +D  P    I E  + EVD+Y+ + LR    ST++H
Sbjct: 636 EILKQTSDVYRKIRNTLRFMLGNINDFNPDTDVIPEAELLEVDRYLLNRLREFTASTIEH 695

Query: 156 TIKKDLEVRTWMDIRSKTEGIV-VEIWEFVLD 64
               D     +++I  + +  + VE+  F LD
Sbjct: 696 YDNFD-----YLNIYQEVQNFINVELSNFYLD 722

>TIG_AQUAE (O67358) Trigger factor (TF)|
          Length = 478

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 222 VAEVDKYVDDYLRHSFPSTLDHTIKKDLEVRTWMDIRSKTEGIVVE-IWEFVLDELID 52
           + E+ K V   L   F   L +   KDLE +   DI+ K E +  + I E V D+L++
Sbjct: 270 IKEIKKKVLPELNDEFAKELGYASLKDLEEKIREDIKQKLEKLKEQVIEERVADKLVE 327

>YDG1_SCHPO (Q10491) Hypothetical protein C26F1.01 in chromosome I|
          Length = 928

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -3

Query: 315 LTEIQERYFRLSSWLSFLKHDIRPPPIGEDLVAEVDKYVDDYLRHSFPSTL 163
           + EIQ+  F++S  + FLK D+           E+D ++ DYLR  FPS++
Sbjct: 795 MIEIQK--FKIS--IKFLKEDL-----------EMDSHLQDYLRSVFPSSV 830

>TRPE_METJA (Q58475) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 474

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 402 NQPCPVEDLPNQGDQIDDLKILFDCICEALTEIQERYFR 286
           N    VE     GD+  DL+  ++C  +AL E++  Y +
Sbjct: 53  NGKLKVESFTEFGDKAKDLEGKYECPLDALREVRNEYLK 91

>HIS5_YEAST (P33734) Imidazole glycerol phosphate synthase hisHF (IGP synthase)|
           (ImGP synthase) (IGPS) [Includes: Glutamine
           amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]
          Length = 552

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 231 EDLVAEVDKYVDDYLRHSFPSTLDHTIKKDLEVRTWMDIRSK 106
           E+L   +D Y   Y  HSF + L+   KK+LE   W   ++K
Sbjct: 131 ENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAK 172

>KGUA_LEGPA (Q5X3P2) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 209

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = -3

Query: 234 GEDLVAEVDKYVDDYLRHSFPSTLDHTI---KKDLEVRTWMDIRSKTEGIVVEIWEFVLD 64
           G D+V ++D    + +RHS+P  +   I     D      M+ R   + ++ E      D
Sbjct: 97  GIDVVLDIDWQGAEQIRHSYPDAVSVFIIPPSLDTLKERLMNRRQDKDNVISERMTKAQD 156

Query: 63  ELIDEAVFDLWI*NSD 16
           EL     FD  I N D
Sbjct: 157 ELGHYPEFDYLIVNDD 172

>CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)|
          Length = 745

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 246 PPPIGEDLVAEVDKYVDDYLRHSFPSTLD 160
           P P+GE L AE   +++ ++RH +   L+
Sbjct: 50  PEPLGERLYAETKIFLESHVRHLYKRVLE 78

>YDM6_SCHPO (P87137) Hypothetical protein C57A7.06 in chromosome I|
          Length = 929

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 234 GEDLVAEVDKYVDDYLRHSFPSTLDHTI 151
           G+D+VAE +K  +D+++   P   DH++
Sbjct: 794 GDDVVAEFEKDKEDWVQEDAPKEEDHSL 821

>DNAK_BUCAP (Q8K9Y8) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 638

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 279 SWLSFLKHDIRPPPIGEDLVAEVDKYVDDYLRHS 178
           +W+   K  + PP I  +++ ++ K  +DYL  S
Sbjct: 101 AWIDVKKQKMAPPQISAEVLKKMKKTAEDYLGES 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,649,094
Number of Sequences: 219361
Number of extensions: 1156406
Number of successful extensions: 3218
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3217
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)