ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 220 3e-54
2gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 220 3e-54
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 220 3e-54
4dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
5gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 155 1e-34
6gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, comp... 46 0.089
7emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chr... 46 0.089
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.089
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.089
10dbj|AK073061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.089
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.089
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.089
13emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 46 0.089
14emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.089
15gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, comp... 46 0.089
16gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Can... 42 1.4
17gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete... 42 1.4
18ref|XM_464737.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.5
19gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete... 40 5.5
20gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467... 40 5.5
21gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.5
22emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chrom... 40 5.5
23gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosom... 40 5.5
24gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosom... 40 5.5
25gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygen... 40 5.5
26ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA 40 5.5
27gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, co... 40 5.5
28gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, c... 40 5.5
29gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 40 5.5
30gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, com... 40 5.5
31gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.5
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
33dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
34dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
35emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on ch... 40 5.5
36emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 5.5
37gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, comple... 40 5.5
38gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, compl... 40 5.5

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  220 bits (111), Expect = 3e-54
 Identities = 323/392 (82%), Gaps = 5/392 (1%)
 Strand = Plus / Minus

                                                                            
Query: 11       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 70
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10412390 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10412331

                                                                            
Query: 71       ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 128
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10412330 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10412271

                                                                            
Query: 129      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 188
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10412270 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10412211

                                                                            
Query: 189      gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 248
                |  | |||   ||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 10412210 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10412154

                                                                            
Query: 249      ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 308
                |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 10412153 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 10412094

                                                                            
Query: 309      ggtgaccgcaatcgagggcctgatctgctcgagctgccgcaatacctgctgcgcctcggg 368
                 |  || || | ||||||| |||||||||||||||| |  |  |||||||| ||||| ||
Sbjct: 10412093 cgatactgccaccgagggcttgatctgctcgagctgtctgagaacctgctgggcctctgg 10412034

                                                
Query: 369      ccgtgccacgggcgaaggatcgacgcaatgca 400
                ||  ||| | || |||||||||||||| ||||
Sbjct: 10412033 cctcgccgccggtgaaggatcgacgcagtgca 10412002



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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  220 bits (111), Expect = 3e-54
 Identities = 323/392 (82%), Gaps = 5/392 (1%)
 Strand = Plus / Minus

                                                                         
Query: 11    gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 70
             |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 68943 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 68884

                                                                         
Query: 71    ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 128
             | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 68883 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 68824

                                                                         
Query: 129   tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 188
             ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 68823 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 68764

                                                                         
Query: 189   gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 248
             |  | |||   ||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 68763 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 68707

                                                                         
Query: 249   ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 308
             |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 68706 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 68647

                                                                         
Query: 309   ggtgaccgcaatcgagggcctgatctgctcgagctgccgcaatacctgctgcgcctcggg 368
              |  || || | ||||||| |||||||||||||||| |  |  |||||||| ||||| ||
Sbjct: 68646 cgatactgccaccgagggcttgatctgctcgagctgtctgagaacctgctgggcctctgg 68587

                                             
Query: 369   ccgtgccacgggcgaaggatcgacgcaatgca 400
             ||  ||| | || |||||||||||||| ||||
Sbjct: 68586 cctcgccgccggtgaaggatcgacgcagtgca 68555



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  220 bits (111), Expect = 3e-54
 Identities = 323/392 (82%), Gaps = 5/392 (1%)
 Strand = Plus / Minus

                                                                            
Query: 11       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 70
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10410491 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10410432

                                                                            
Query: 71       ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 128
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10410431 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10410372

                                                                            
Query: 129      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 188
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10410371 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10410312

                                                                            
Query: 189      gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 248
                |  | |||   ||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 10410311 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10410255

                                                                            
Query: 249      ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 308
                |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 10410254 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 10410195

                                                                            
Query: 309      ggtgaccgcaatcgagggcctgatctgctcgagctgccgcaatacctgctgcgcctcggg 368
                 |  || || | ||||||| |||||||||||||||| |  |  |||||||| ||||| ||
Sbjct: 10410194 cgatactgccaccgagggcttgatctgctcgagctgtctgagaacctgctgggcctctgg 10410135

                                                
Query: 369      ccgtgccacgggcgaaggatcgacgcaatgca 400
                ||  ||| | || |||||||||||||| ||||
Sbjct: 10410134 cctcgccgccggtgaaggatcgacgcagtgca 10410103



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>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score =  220 bits (111), Expect = 3e-54
 Identities = 323/392 (82%), Gaps = 5/392 (1%)
 Strand = Plus / Minus

                                                                        
Query: 11   gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 70
            |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1603 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 1544

                                                                        
Query: 71   ttaggaatgaaagaatgacacgggcaccaaaactctcttg--ccctctaagaactctata 128
            | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 1543 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 1484

                                                                        
Query: 129  tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 188
            ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 1483 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 1424

                                                                        
Query: 189  gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 248
            |  | |||   ||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 1423 gaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 1367

                                                                        
Query: 249  ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgaggtggc 308
            |||||| || || || ||||| || || |||||||||||||||||||||||||||| |||
Sbjct: 1366 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgaggaggc 1307

                                                                        
Query: 309  ggtgaccgcaatcgagggcctgatctgctcgagctgccgcaatacctgctgcgcctcggg 368
             |  || || | ||||||| |||||||||||||||| |  |  |||||||| ||||| ||
Sbjct: 1306 cgatactgccaccgagggcttgatctgctcgagctgtctgagaacctgctgggcctctgg 1247

                                            
Query: 369  ccgtgccacgggcgaaggatcgacgcaatgca 400
            ||  ||| | || |||||||||||||| ||||
Sbjct: 1246 cctcgccgccggtgaaggatcgacgcagtgca 1215



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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score =  155 bits (78), Expect = 1e-34
 Identities = 227/276 (82%), Gaps = 3/276 (1%)
 Strand = Plus / Minus

                                                                          
Query: 125    tatatacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaag 184
              ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||
Sbjct: 125740 tatatacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaag 125681

                                                                          
Query: 185    agctgggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtat 244
              | | |  | |||   ||||||||||||||||||||||||||||  | || ||| |||| |
Sbjct: 125680 aaccgaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgt 125624

                                                                          
Query: 245    catcggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaaggacgagg 304
              | |||||||| || || || ||||| || || ||||||||||||||||||||||||||||
Sbjct: 125623 cgtcggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaaggacgagg 125564

                                                                          
Query: 305    tggcggtgaccgcaatcgagggcctgatctgctcgagctgccgcaatacctgctgcgcct 364
               ||| |  || || | ||||||| |||||||||||||||| |  |  |||||||| ||||
Sbjct: 125563 aggccgatactgccaccgagggcttgatctgctcgagctgtctgagaacctgctgggcct 125504

                                                  
Query: 365    cgggccgtgccacgggcgaaggatcgacgcaatgca 400
              | ||||  ||| | || |||||||||||||| ||||
Sbjct: 125503 ctggcctcgccgccggtgaaggatcgacgcagtgca 125468



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>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 120    aactctatatacagactgaaaaa 142
              |||||||||||||||||||||||
Sbjct: 155387 aactctatatacagactgaaaaa 155409



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>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 173   gaagaaactaagagctgggattt 195
             |||||||||||||||||||||||
Sbjct: 20220 gaagaaactaagagctgggattt 20242



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 325    ggcctgatctgctcgagctgccg 347
              |||||||||||||||||||||||
Sbjct: 420228 ggcctgatctgctcgagctgccg 420206



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 325    ggcctgatctgctcgagctgccg 347
              |||||||||||||||||||||||
Sbjct: 361274 ggcctgatctgctcgagctgccg 361252



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>dbj|AK073061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033021A01, full
            insert sequence
          Length = 2391

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 325  ggcctgatctgctcgagctgccg 347
            |||||||||||||||||||||||
Sbjct: 2037 ggcctgatctgctcgagctgccg 2015



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 325    ggcctgatctgctcgagctgccg 347
              |||||||||||||||||||||||
Sbjct: 361274 ggcctgatctgctcgagctgccg 361252



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 325    ggcctgatctgctcgagctgccg 347
              |||||||||||||||||||||||
Sbjct: 420228 ggcctgatctgctcgagctgccg 420206



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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 325   ggcctgatctgctcgagctgccg 347
             |||||||||||||||||||||||
Sbjct: 68592 ggcctgatctgctcgagctgccg 68570



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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 325    ggcctgatctgctcgagctgccg 347
              |||||||||||||||||||||||
Sbjct: 126544 ggcctgatctgctcgagctgccg 126566



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>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 120   aactctatatacagactgaaaaa 142
             |||||||||||||||||||||||
Sbjct: 25345 aactctatatacagactgaaaaa 25323



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>gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155898

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     ccagatacaaatgaatttagg 75
              |||||||||||||||||||||
Sbjct: 132468 ccagatacaaatgaatttagg 132448



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>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence
          Length = 113862

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    acaaatgaatttaggaatgaa 81
             |||||||||||||||||||||
Sbjct: 53216 acaaatgaatttaggaatgaa 53236



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>ref|XM_464737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 gtagtggcggtcgcagtagt 275
           ||||||||||||||||||||
Sbjct: 279 gtagtggcggtcgcagtagt 260



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>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence
          Length = 173785

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aactctatatacagactgaa 139
              ||||||||||||||||||||
Sbjct: 112238 aactctatatacagactgaa 112219



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>gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467 IMAGE:7043653),
            complete cds
          Length = 1420

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   ccaaaactctcttgccctct 116
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175



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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 348     caatacctgctgcgcctcgg 367
               ||||||||||||||||||||
Sbjct: 4088427 caatacctgctgcgcctcgg 4088446



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>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete
             sequence
          Length = 210030

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 138   aaaaatagactctggagtctactt 161
             |||||| |||||||||||||||||
Sbjct: 33094 aaaaattgactctggagtctactt 33071



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>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tttctttcagtctgcaagag 213
             ||||||||||||||||||||
Sbjct: 82464 tttctttcagtctgcaagag 82445



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>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 138    aaaaatagactctggagtctactt 161
              |||||| |||||||||||||||||
Sbjct: 199654 aaaaattgactctggagtctactt 199677



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>gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygenase 1 (CCD1) gene,
            complete cds
          Length = 8665

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  tggctcggctcgccggtgaa 296
            ||||||||||||||||||||
Sbjct: 6330 tggctcggctcgccggtgaa 6349



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>ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA
          Length = 1420

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   ccaaaactctcttgccctct 116
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175



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>gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, complete sequence
          Length = 180591

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     acaaatgaatttaggaatga 80
              ||||||||||||||||||||
Sbjct: 143624 acaaatgaatttaggaatga 143605



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>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence
          Length = 188605

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     acaaatgaatttaggaatga 80
              ||||||||||||||||||||
Sbjct: 138484 acaaatgaatttaggaatga 138465



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>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     acaaatgaatttaggaatga 80
              ||||||||||||||||||||
Sbjct: 152752 acaaatgaatttaggaatga 152771



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>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence
          Length = 64373

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    acaaatgaatttaggaatga 80
             ||||||||||||||||||||
Sbjct: 16772 acaaatgaatttaggaatga 16791



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    ttattaatagtctgaagaaa 179
              ||||||||||||||||||||
Sbjct: 766718 ttattaatagtctgaagaaa 766737



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 256     gtagtggcggtcgcagtagt 275
               ||||||||||||||||||||
Sbjct: 7024168 gtagtggcggtcgcagtagt 7024149



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>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   gtagtggcggtcgcagtagt 275
             ||||||||||||||||||||
Sbjct: 27587 gtagtggcggtcgcagtagt 27568



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>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470A03
          Length = 133167

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    gtagtggcggtcgcagtagt 275
              ||||||||||||||||||||
Sbjct: 117790 gtagtggcggtcgcagtagt 117771



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>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
             sequence
          Length = 145652

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tttctttcagtctgcaagag 213
             ||||||||||||||||||||
Sbjct: 46654 tttctttcagtctgcaagag 46635



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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     gctgactactctgtggtggt 233
               ||||||||||||||||||||
Sbjct: 1107079 gctgactactctgtggtggt 1107060



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>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 141    aatagactctggagtctacttattaata 168
              ||||| |||||||||| |||||||||||
Sbjct: 116693 aatagtctctggagtccacttattaata 116720



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>gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, complete sequence
          Length = 38013

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    acaaatgaatttaggaatga 80
             ||||||||||||||||||||
Sbjct: 12922 acaaatgaatttaggaatga 12941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,587,325
Number of Sequences: 3902068
Number of extensions: 3587325
Number of successful extensions: 69798
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69520
Number of HSP's gapped (non-prelim): 268
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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