ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1) 31 1.4
2E2AK3_CAEEL (Q19192) Eukaryotic translation initiation factor 2-... 31 1.4
3DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5) 31 1.4
4CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1) 31 1.4
5Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22) 30 3.2
6CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1) 29 5.4
7GATA7_ARATH (Q9SKN6) Putative GATA transcription factor 7 28 7.1
8P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor ... 28 9.2
9MSHM_SARGL (O63852) Mitochondrial MutS protein homolog 28 9.2

>CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1)|
          Length = 259

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 107 AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 214
           AK  SAPY     +PG       SLLNN W   A H
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74



to top

>E2AK3_CAEEL (Q19192) Eukaryotic translation initiation factor 2-alpha kinase|
           precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum
           kinase) (PERK) (PEK) (CePEK)
          Length = 1077

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 414 CSPGT*ATP--PTILI*RRHGLVRDRLSTREVIRR*SSTVKYYRVGVDVAGGFRRPFAIS 241
           C PG   TP  P ILI R    +R   + R + R   ST +   +GV +AGG   P  +S
Sbjct: 171 CGPGDTETPKNPIILIRRTTNSIRAMDTLRGIERWNLSTAE---IGVTLAGGITSPTLVS 227

Query: 240 SIVI 229
            + I
Sbjct: 228 DVKI 231



to top

>DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5)|
          Length = 915

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
 Frame = +2

Query: 125 PYSPLH---SIPGPASTT---SWSLLNNSW---RYRAEHQS*SEITMLEMANGLLNPPAT 277
           PYSP H    +P  A+TT   S SL +++W     + E  S   ++ L +A G  +P   
Sbjct: 70  PYSPRHESWGLPSNANTTLLGSSSLTSSNWFPFTDQKETSSNEILSSLNLAAGSSSPALP 129

Query: 278 STPTR 292
           STP+R
Sbjct: 130 STPSR 134



to top

>CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1)|
          Length = 258

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 107 AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 214
           AK  SAPY     +PG       SLLNN W   A H
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74



to top

>Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22)|
          Length = 220

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 33  FKRKDTTSSLLQER*HTAHAY----PQ-HQQNNLLHLTPPYTPFQDQPRLPAGRF*TIHG 197
           F RK+T S  +  R H    Y    PQ HQ    LHLT P  P+    R PA       G
Sbjct: 94  FHRKETES--IGGRAHRVPTYYNRPPQPHQPPGYLHLTSPAAPY----RPPAA-----SG 142

Query: 198 DTEQSTNPN 224
           D E ++NP+
Sbjct: 143 DEEDTSNPS 151



to top

>CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1)|
          Length = 505

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   KARLKTSIFKRKDTTSSLLQER*HTAHAYPQHQQ 110
           +A +KT +F   DTTSS +    +    YP+HQQ
Sbjct: 305 QAEVKTFMFAGHDTTSSAISWILYCLAKYPEHQQ 338



to top

>GATA7_ARATH (Q9SKN6) Putative GATA transcription factor 7|
          Length = 315

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 118 FCTLLPPTLHSRTSLDYQLVAFEQFMEIQSRAPILI 225
           F  L+PP L    SL Y+     Q +++Q   PIL+
Sbjct: 48  FQKLVPPPLDELMSLSYEFTCNGQRVQVQKHVPILL 83



to top

>P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 391

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 92  IPATPAK*SSAPYSPLHSIPGPASTTSWSL 181
           +PA PA  + AP +P  + P PA  TSW L
Sbjct: 63  VPAAPAPEAPAPAAPALAAPAPA--TSWPL 90



to top

>MSHM_SARGL (O63852) Mitochondrial MutS protein homolog|
          Length = 982

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 14  TIKNKYFQKEGYNIFSSSRKMT 79
           +IK +YF KEGY    SS+K+T
Sbjct: 530 SIKAEYFNKEGYAFSISSKKLT 551


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,449,740
Number of Sequences: 219361
Number of extensions: 1429781
Number of successful extensions: 3120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3120
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top