ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY112097.1| Zea mays CL313_-3 mRNA sequence 46 0.093
2gb|BC073483.1| Xenopus laevis cDNA clone IMAGE:5570009, partial cds 42 1.5
3emb|Z66512.1|CEF52H3 Caenorhabditis elegans Cosmid F52H3, comple... 42 1.5
4gb|AC152977.1| Mus musculus 10 BAC RP23-251I19 (Roswell Park Can... 42 1.5
5gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, com... 42 1.5
6gb|AY109431.1| Zea mays CL313_1 mRNA sequence 42 1.5
7gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, com... 42 1.5
8ref|NM_111012.2| Arabidopsis thaliana MBD9; DNA binding AT3G0146... 40 5.7
9ref|XM_526121.1| PREDICTED: Pan troglodytes similar to SETMAR pr... 40 5.7
10gb|AC119980.7| Mus musculus chromosome 8, clone RP24-495J19, com... 40 5.7
11gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, com... 40 5.7
12gb|AC132104.3| Mus musculus BAC clone RP24-364N7 from chromosome... 40 5.7
13gb|BC011635.2| Homo sapiens SET domain and mariner transposase f... 40 5.7
14gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC... 40 5.7
15gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p... 40 5.7
16gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p... 40 5.7
17gb|BC008931.2| Homo sapiens SET domain and mariner transposase f... 40 5.7
18ref|NM_006515.1| Homo sapiens SET domain and mariner transposase... 40 5.7
19emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chro... 40 5.7
20ref|NM_001017032.2| Xenopus tropicalis leucine zipper transcript... 40 5.7
21emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BA... 40 5.7
22emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in ... 40 5.7
23emb|CR600492.1| full-length cDNA clone CS0DF011YL04 of Fetal bra... 40 5.7
24gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, comp... 40 5.7
25gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, comp... 40 5.7
26dbj|AK222734.1| Homo sapiens mRNA for SET domain and mariner tra... 40 5.7
27gb|AF212832.5| Homo sapiens chromosome 8 clone CTC-806C5 map 8q2... 40 5.7
28gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.7
29emb|CR762013.2| Xenopus tropicalis finished cDNA, clone TEgg003i20 40 5.7
30gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 5.7
31gb|U80776.1|HSU80776 Human EST clone NIB1543 mariner transposon ... 40 5.7
32gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 5.7
33gb|AF054989.1|AF054989 Homo sapiens clone 23658 unknown mRNA, co... 40 5.7

>gb|AY112097.1| Zea mays CL313_-3 mRNA sequence
          Length = 603

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                     
Query: 168 ccagctggtcgcttttgaacaattcatggagatacagagcagagcaccaatcctaatc 225
           |||||||| |||||| ||||| ||||||||||  |  |||||||||||||||||||||
Sbjct: 442 ccagctggccgcttt-gaacagttcatggaga--cgtagcagagcaccaatcctaatc 388



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>gb|BC073483.1| Xenopus laevis cDNA clone IMAGE:5570009, partial cds
          Length = 5458

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  aatcttctgcaccttactccc 134
            |||||||||||||||||||||
Sbjct: 5287 aatcttctgcaccttactccc 5307



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>emb|Z66512.1|CEF52H3 Caenorhabditis elegans Cosmid F52H3, complete sequence
          Length = 42632

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    aaggatacaacatcttctctt 62
             |||||||||||||||||||||
Sbjct: 37619 aaggatacaacatcttctctt 37639



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>gb|AC152977.1| Mus musculus 10 BAC RP23-251I19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 192515

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 228   aaatcacaatgctagaaatgg 248
             |||||||||||||||||||||
Sbjct: 21906 aaatcacaatgctagaaatgg 21886



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>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 18     ttaaaaacaagtattttcaaa 38
              |||||||||||||||||||||
Sbjct: 196127 ttaaaaacaagtattttcaaa 196107



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>gb|AY109431.1| Zea mays CL313_1 mRNA sequence
          Length = 2617

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/52 (86%), Gaps = 2/52 (3%)
 Strand = Plus / Minus

                                                               
Query: 181 tttgaacaattcatggagatacagagcagagcaccaatcctaatctgaaatc 232
           |||||||||||||||||||| |  ||||||  || |||||||||||| ||||
Sbjct: 855 tttgaacaattcatggagatgc--agcagactacaaatcctaatctggaatc 806



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>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence
          Length = 184206

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     ttaaaaacaagtattttcaaa 38
              |||||||||||||||||||||
Sbjct: 154018 ttaaaaacaagtattttcaaa 154038



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>ref|NM_111012.2| Arabidopsis thaliana MBD9; DNA binding AT3G01460 (MBD9) mRNA,
           complete cds
          Length = 7457

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttctcttcttcaagaaagat 75
           ||||||||||||||||||||
Sbjct: 978 ttctcttcttcaagaaagat 997



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>ref|XM_526121.1| PREDICTED: Pan troglodytes similar to SETMAR protein (LOC470738),
           mRNA
          Length = 1098

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 37  cacaaggccgtgtcgtcttt 18



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>gb|AC119980.7| Mus musculus chromosome 8, clone RP24-495J19, complete sequence
          Length = 145150

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   gaaatcacaatgctagaaat 246
             ||||||||||||||||||||
Sbjct: 38616 gaaatcacaatgctagaaat 38597



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>gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, complete sequence
          Length = 197827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aacatcttctcttcttcaag 69
             ||||||||||||||||||||
Sbjct: 73997 aacatcttctcttcttcaag 74016



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>gb|AC132104.3| Mus musculus BAC clone RP24-364N7 from chromosome 9, complete sequence
          Length = 161545

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    ctcccccctacactccattc 149
              ||||||||||||||||||||
Sbjct: 111178 ctcccccctacactccattc 111159



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>gb|BC011635.2| Homo sapiens SET domain and mariner transposase fusion gene, mRNA
           (cDNA clone MGC:12780 IMAGE:4080032), complete cds
          Length = 1701

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 30  cacaaggccgtgtcgtcttt 11



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>gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence,
             complete sequence
          Length = 86324

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    ttctcttcttcaagaaagat 75
             ||||||||||||||||||||
Sbjct: 77558 ttctcttcttcaagaaagat 77577



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>gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p, complete sequence
          Length = 171051

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    cacaaggccgtgtcgtcttt 371
              ||||||||||||||||||||
Sbjct: 161166 cacaaggccgtgtcgtcttt 161147



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>gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p, complete sequence
          Length = 172221

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   cacaaggccgtgtcgtcttt 371
             ||||||||||||||||||||
Sbjct: 96955 cacaaggccgtgtcgtcttt 96936



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>gb|BC008931.2| Homo sapiens SET domain and mariner transposase fusion gene, mRNA
           (cDNA clone IMAGE:2819917), partial cds
          Length = 1329

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 23  cacaaggccgtgtcgtcttt 4



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>ref|NM_006515.1| Homo sapiens SET domain and mariner transposase fusion gene
           (SETMAR), mRNA
          Length = 2063

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 21  cacaaggccgtgtcgtcttt 2



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>emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chromosome 13 Contains a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and a novel pseudogene (KIAA1935 FLJ31359),
              complete sequence
          Length = 154273

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    tcatggagatacagagcaga 210
              ||||||||||||||||||||
Sbjct: 109956 tcatggagatacagagcaga 109937



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>ref|NM_001017032.2| Xenopus tropicalis leucine zipper transcription factor-like 1
           (lztfl1), mRNA
          Length = 1230

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   gaaggcacgattaaaaacaa 27
           ||||||||||||||||||||
Sbjct: 564 gaaggcacgattaaaaacaa 583



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>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8
          Length = 87224

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   aatcctaatctgaaatcacaatgc 239
             ||||||||||| ||||||||||||
Sbjct: 29377 aatcctaatctaaaatcacaatgc 29354



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>emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in linkage group 10, complete
              sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tggagatacagagcagagca 213
              ||||||||||||||||||||
Sbjct: 188996 tggagatacagagcagagca 189015



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>emb|CR600492.1| full-length cDNA clone CS0DF011YL04 of Fetal brain of Homo sapiens
           (human)
          Length = 1651

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 34  cacaaggccgtgtcgtcttt 15



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>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tcatggagatacagagcaga 210
             ||||||||||||||||||||
Sbjct: 46198 tcatggagatacagagcaga 46217



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>gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, complete sequence
          Length = 189207

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   gtagtactttacagttgaac 311
             ||||||||||||||||||||
Sbjct: 32416 gtagtactttacagttgaac 32397



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>dbj|AK222734.1| Homo sapiens mRNA for SET domain and mariner transposase fusion
           gene variant, clone: DMC03654
          Length = 2093

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 40  cacaaggccgtgtcgtcttt 21



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>gb|AF212832.5| Homo sapiens chromosome 8 clone CTC-806C5 map 8q24.3, complete sequence
          Length = 122029

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    gtagtactttacagttgaac 311
              ||||||||||||||||||||
Sbjct: 102536 gtagtactttacagttgaac 102555



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    aaaataatcttctgcacctt 128
              ||||||||||||||||||||
Sbjct: 838347 aaaataatcttctgcacctt 838366



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>emb|CR762013.2| Xenopus tropicalis finished cDNA, clone TEgg003i20
          Length = 1230

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   gaaggcacgattaaaaacaa 27
           ||||||||||||||||||||
Sbjct: 564 gaaggcacgattaaaaacaa 583



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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     aaaacaagtattttcaaaag 40
              ||||||||||||||||||||
Sbjct: 799768 aaaacaagtattttcaaaag 799749



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>gb|U80776.1|HSU80776 Human EST clone NIB1543 mariner transposon Hsmar1 orf gene,
           complete cds
          Length = 2063

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 21  cacaaggccgtgtcgtcttt 2



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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     tattttcaaaaggaaggata 48
              ||||||||||||||||||||
Sbjct: 549093 tattttcaaaaggaaggata 549112



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>gb|AF054989.1|AF054989 Homo sapiens clone 23658 unknown mRNA, complete cds
          Length = 2087

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 cacaaggccgtgtcgtcttt 371
           ||||||||||||||||||||
Sbjct: 30  cacaaggccgtgtcgtcttt 11


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,147,721
Number of Sequences: 3902068
Number of extensions: 4147721
Number of successful extensions: 103752
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103636
Number of HSP's gapped (non-prelim): 116
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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