ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATPG_BUCAI (P57123) ATP synthase gamma chain (EC 3.6.3.14) (ATP ... 28 5.5
2V2A_BBMV (P27462) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (... 28 7.1
3ADK_HUMAN (P55263) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosin... 27 9.3
4ADK_CRIGR (P55262) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosin... 27 9.3

>ATPG_BUCAI (P57123) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 290

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 189 AANSYTNLVFRPSNKTVVQTIFSEYIEQYLSQ 284
           A+N+  + ++ P +K ++ T+F+ YIE  + Q
Sbjct: 199 ASNNNWDYLYEPESKLILDTLFNRYIESQVYQ 230



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>V2A_BBMV (P27462) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 810

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 54  HCCTETHLYFDNSYYRDF 1
           H   +TH YFD+SYY  F
Sbjct: 251 HNALKTHAYFDDSYYEGF 268



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>ADK_HUMAN (P55263) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosine|
           5'-phosphotransferase)
          Length = 362

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 231 CLTAERRGLCRNSRQARCYMGEKNL 157
           C+T + R L  N   A CY  EK+L
Sbjct: 143 CITGDNRSLIANLAAANCYKKEKHL 167



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>ADK_CRIGR (P55262) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosine|
           5'-phosphotransferase)
          Length = 361

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 231 CLTAERRGLCRNSRQARCYMGEKNL 157
           C+T + R L  N   A CY  EK+L
Sbjct: 142 CITGDNRSLVANLAAANCYKKEKHL 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,805,202
Number of Sequences: 219361
Number of extensions: 876192
Number of successful extensions: 1476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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