ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33b10 |
|---|---|
| Clone Library Name | barley_pub |
>SYM_ORYSA (Q9ZTS1) Probable methionyl-tRNA synthetase (EC 6.1.1.10)| (Methionine--tRNA ligase) (MetRS) Length = 804 Score = 167 bits (423), Expect = 1e-41 Identities = 82/86 (95%), Positives = 85/86 (98%) Frame = -3 Query: 454 LAASNEDHTKVELVEPPESAAVGERVTFAGFSGEPEASLNAKSKTWEKLSADLHSNGELV 275 LAASNEDHTKVELVEPPESAAVGERVTFAG+SGEPEASLNAKSKTWEKLSADLHSNGELV Sbjct: 719 LAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELV 778 Query: 274 ACYKDVPFTTSAGVCKVKTIANGAIR 197 ACYKDVPFTTSAGVCKVK+IA+G IR Sbjct: 779 ACYKDVPFTTSAGVCKVKSIASGEIR 804
>SYM_ARATH (Q9SVN5) Probable methionyl-tRNA synthetase (EC 6.1.1.10)| (Methionine--tRNA ligase) (MetRS) Length = 797 Score = 121 bits (303), Expect = 1e-27 Identities = 58/86 (67%), Positives = 68/86 (79%) Frame = -3 Query: 454 LAASNEDHTKVELVEPPESAAVGERVTFAGFSGEPEASLNAKSKTWEKLSADLHSNGELV 275 LAAS+ D +KVELVEPP++A +GERVTF GF GEP+ LN K K WE L DL++ LV Sbjct: 712 LAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLV 771 Query: 274 ACYKDVPFTTSAGVCKVKTIANGAIR 197 ACYKDVPFTTSAGVCKV +I+NG IR Sbjct: 772 ACYKDVPFTTSAGVCKVSSISNGTIR 797
>MCA1_MOUSE (P31230) Multisynthetase complex auxiliary component p43 [Contains:| Endothelial monocyte-activating polypeptide 2 (EMAP-II) (Small inducible cytokine subfamily E member 1)] Length = 310 Score = 83.6 bits (205), Expect = 2e-16 Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Frame = -3 Query: 427 KVELVEPPESAAVGERVTFAGFSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFT 248 KVE++ PP + G+R+TF F GEP+ LN K K WE++ DLH+N E VA YK PF Sbjct: 233 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFE 292 Query: 247 TSA-GVCKVKTIANGAIR 197 GVC+ +T+AN I+ Sbjct: 293 VKGKGVCRAQTMANSGIK 310
>MCA1_HUMAN (Q12904) Multisynthetase complex auxiliary component p43 [Contains:| Endothelial monocyte-activating polypeptide 2 (EMAP-II) (Small inducible cytokine subfamily E member 1)] Length = 312 Score = 83.2 bits (204), Expect = 3e-16 Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Frame = -3 Query: 427 KVELVEPPESAAVGERVTFAGFSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFT 248 K+E++ PP + G+R+TF F GEP+ LN K K WE++ DLH+N E VA YK VPF Sbjct: 235 KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFE 294 Query: 247 TSA-GVCKVKTIANGAIR 197 GVC+ +T++N I+ Sbjct: 295 VKGKGVCRAQTMSNSGIK 312
>MCA1_CRIGR (O54873) Multisynthetase complex auxiliary component p43 [Contains:| Endothelial monocyte-activating polypeptide 2 (EMAP-II) (Small inducible cytokine subfamily E member 1)] Length = 359 Score = 82.8 bits (203), Expect = 4e-16 Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Frame = -3 Query: 427 KVELVEPPESAAVGERVTFAGFSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFT 248 KVE++ PP + G+R+TF F GEP+ LN K K WE++ DLH+N E VA YK PF Sbjct: 282 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFE 341 Query: 247 TSA-GVCKVKTIANGAIR 197 GVC+ +T+AN I+ Sbjct: 342 VKGKGVCRAQTMANSGIK 359
>SYYC_BOVIN (Q29465) Tyrosyl-tRNA synthetase, cytoplasmic (EC 6.1.1.1)| (Tyrosyl--tRNA ligase) (TyrRS) Length = 527 Score = 56.2 bits (134), Expect = 4e-08 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Frame = -3 Query: 454 LAASNED-HTKVELVEPPESAAVGERVTFAGFS-GEPEASLNAKSKTWEKLSADLHSNGE 281 L AS E + KVE ++PP +A GERV G+ G+P+ L K K +EKL AD + E Sbjct: 440 LCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDE 499 Query: 280 LVACYKDVPFTTSAGVCKVKTIANGAI 200 +A +K F T G K++ G I Sbjct: 500 YIAQWKQTNFMTKMGSVSCKSLKGGNI 526
>G4P1_YEAST (P46672) GU4 nucleic-binding protein 1 (G4p1 protein) (P42) (ARC1| protein) Length = 376 Score = 54.3 bits (129), Expect = 2e-07 Identities = 38/100 (38%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Frame = -3 Query: 466 TCYGLAASNEDHTKVELVEPPESAAVGERVTFAGFSGE-PEASLNAKSKTWEKLSADLHS 290 T L SN+D KVE VEPP+ + G++V F GF E P LN K K WE L + Sbjct: 279 TAMVLCGSNDD--KVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTT 336 Query: 289 NGELVACYKDV--------PFTTSAGVC-KVKTIANGAIR 197 N L +KD T + G KV +IAN +R Sbjct: 337 NDGLEVIFKDEEEKDHPVRKLTNAKGESFKVASIANAQVR 376
>SYYC_MOUSE (Q91WQ3) Tyrosyl-tRNA synthetase, cytoplasmic (EC 6.1.1.1)| (Tyrosyl--tRNA ligase) (TyrRS) Length = 527 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -3 Query: 427 KVELVEPPESAAVGERVTFAGFS-GEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPF 251 +VE ++PP +A GERV G+ G+P+ L K K +EKL AD + E +A +K F Sbjct: 450 QVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNF 509 Query: 250 TTSAGVCKVKTIANGAI 200 T G K++ G I Sbjct: 510 MTKLGFVSCKSLKGGNI 526
>SYYC_HUMAN (P54577) Tyrosyl-tRNA synthetase, cytoplasmic (EC 6.1.1.1)| (Tyrosyl--tRNA ligase) (TyrRS) Length = 527 Score = 52.4 bits (124), Expect = 6e-07 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Frame = -3 Query: 454 LAASNED-HTKVELVEPPESAAVGERVTFAGFS-GEPEASLNAKSKTWEKLSADLHSNGE 281 L AS E + +VE ++PP +A GE V G+ G+P+ L K K +EKL AD + E Sbjct: 440 LCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEE 499 Query: 280 LVACYKDVPFTTSAGVCKVKTIANGAI 200 +A +K F T G K++ G I Sbjct: 500 CIAQWKQTNFMTKLGSISCKSLKGGNI 526
>SYM_CAEEL (Q20970) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 917 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = -3 Query: 454 LAASNEDHTKVELVEPPESAAVGERVTFAGFSGEPEASLNAKSKTWEKLSADLHSNGELV 275 + AS+ D KVE++E P + G V ++ P+ LN K K WE ++ DL + E Sbjct: 833 MCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGF 890 Query: 274 ACYKDVP 254 A +K P Sbjct: 891 AEWKGQP 897
>RECA_MYCGS (Q9F414) Protein recA (Recombinase A) [Contains: Mga recA intein]| (Fragment) Length = 419 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = +3 Query: 144 PMKSDSDSVRLQIGHCA*RIAPF--AIVLTLHTP-AEVVNGTSL*HATSSPL 290 P++ DS+S RL+IGH A + A F + L + P + VNG SPL Sbjct: 140 PVRQDSESARLRIGHGAQQSAYFDWKVSLLANIPHSRTVNGKGAAFVDFSPL 191
>PROA_AZOSE (Q5P255) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 425 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -3 Query: 457 GLAASNEDHTKVELVEPPESAAVGERVTFAGF 362 GLAA+ T V++VE + AAVG +T F Sbjct: 167 GLAAAGLPETSVQVVETTDRAAVGHLITMPEF 198
>SYR_PYRFU (Q8U149) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 629 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = -3 Query: 460 YGLAASNEDHTKVELVEPPESAAVGERVTFAGFSGE---PEASLNAKSKTWEK 311 Y AA N H E VE PE G + T+ GF+ + EA AKS EK Sbjct: 403 YKDAAENFHHLAYEHVESPEGKFSGRKGTWVGFTVDEVIAEAINKAKSLIEEK 455 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,063,359 Number of Sequences: 219361 Number of extensions: 1338091 Number of successful extensions: 3486 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3396 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3483 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
