ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33b09 |
|---|---|
| Clone Library Name | barley_pub |
>MARF_DROME (Q7YU24) Transmembrane GTPase Marf (EC 3.6.5.-) (Mitochondrial| assembly regulatory factor) (Mitofusin) Length = 810 Score = 32.7 bits (73), Expect = 0.41 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Frame = +1 Query: 10 DNHAKNLDCFVYILNTKTFKRNRFEPTYHLHGSLAPHPTA----NRWSANQHPPN*SES 174 DNH N D FV +LN ++ + +H P NRW A+ + P ES Sbjct: 254 DNHCLNADVFVLVLNAESTMTRAEKQFFHTVSQKLSKPNIFILNNRWDASANEPECQES 312
>CD68_HUMAN (P34810) Macrosialin precursor (GP110) (CD68 antigen)| Length = 354 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 85 PTYHLHGSLAPHPTANRWSANQHPPN*SESQATT 186 PT HG++ HPT+N + +Q P + S ATT Sbjct: 81 PTTTSHGNVTVHPTSNSTATSQGPSTATHSPATT 114
>SNPC4_MOUSE (Q8BP86) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)| (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) Length = 1333 Score = 31.2 bits (69), Expect = 1.2 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Frame = +3 Query: 123 HGQQVVSKPTSTQLV*IPGNNIF*SSSPSYGRVPL--VSTLNPQGPGLINISLKPN*KTS 296 HG VV TS+ + +P + SSSPS G P+ +S + Q P L ISL P K Sbjct: 910 HGSPVVGPATSSVELSVPVAPVMVSSSPS-GSWPVGGISATDKQPPNLQTISLNPPHK-- 966 Query: 297 GL*RPGMELLCWACFRCICSA 359 G ++ A FR + A Sbjct: 967 -----GTQVAAPAAFRSLALA 982
>KE4_BRARE (Q9PUB8) Zinc transporter Slc39a7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) (Fragment) Length = 352 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = +1 Query: 94 HLHGSLAPHPTANRWSANQHPPN*SESQATTFSSHLHHHTAEY 222 H HG H A++WSA + P+ E H H H ++ Sbjct: 39 HSHGGAKMHHGASKWSAEANLPHAEEEHHVHDHGHTHDHAHDH 81
>CAH_ERWCA (O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate| dehydratase) Length = 244 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +1 Query: 91 YHLHGSLAPHPTAN--RWSANQHPPN*SESQATTFSSHLHH 207 Y GSL P + RW HP S Q + FSS +HH Sbjct: 188 YRFSGSLTTPPCSEGIRWLVLDHPVTASAEQISQFSSVMHH 228
>CAH_ERWCT (Q6DAJ6) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate| dehydratase) Length = 244 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +1 Query: 91 YHLHGSLAPHPTAN--RWSANQHPPN*SESQATTFSSHLHH 207 Y GSL P + RW HP S Q FSS +HH Sbjct: 188 YRFSGSLTTPPCSEGIRWLVLDHPVTASAEQINQFSSVMHH 228
>SEPR_THESR (P80146) Extracellular serine proteinase precursor (EC 3.4.21.-)| Length = 410 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/57 (31%), Positives = 23/57 (40%) Frame = -3 Query: 265 LMSPGPWGLRVETSGTLPYDGEDD*KMLLPGIQTSWVDVGLLTTCWPWDGAQGSHVD 95 + SP WGL TLP DG G+ VD G+L + + G G D Sbjct: 134 VQSPATWGLDRIDQRTLPLDGRYTYTATGAGVHAYVVDTGILLSHQEFTGRIGKGYD 190
>TAF9B_HUMAN (Q9HBM6) Transcription initiation factor TFIID subunit 9B| (Transcription initiation factor TFIID subunit 9-like protein) (Transcription-associated factor TAFII31L) (Neuronal cell death-related protein 7) (DN-7) Length = 251 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +2 Query: 110 LRPIPRPTGGQQTNIHPTSLNPRQQHFLVIFTIIRQSTTSLNSQSPRARAHQ 265 ++P+P T Q I+P+ + P+ ++I T + S + N +P R H+ Sbjct: 195 VKPVPATTAVQNVLINPSMIGPKN---ILITTNMVSSQNTANEANPLKRKHE 243
>SGOL1_XENLA (Q4KLP8) Shugoshin-like 1 (Xsgo)| Length = 663 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +2 Query: 149 NIHPTSLNPRQQHFL-VIFTIIRQSTTSLNSQSPRARAHQHQPE--AKLED 292 N+ P L P Q++F + ++T +N QS R+H +QP ++LE+ Sbjct: 184 NVIPNRLEPEQRNFKDKVVLEANRNTAGVNRQSRGRRSHSNQPSFTSRLEE 234
>RNG_SHIFL (P0A9J3) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -3 Query: 184 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 68 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>RNG_ECOLI (P0A9J0) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -3 Query: 184 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 68 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>RNG_ECOL6 (P0A9J1) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -3 Query: 184 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 68 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>RNG_ECO57 (P0A9J2) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -3 Query: 184 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 68 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger protein 258)| Length = 723 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/71 (36%), Positives = 36/71 (50%) Frame = +3 Query: 39 CVYIKYENV*TQQV*TNISSTWEPCAPSHGQQVVSKPTSTQLV*IPGNNIF*SSSPSYGR 218 CV + ++NV ++ TN S+ S GQ VVS P+S V I G N + SPS R Sbjct: 349 CV-VAFQNVFSKPKGTNSSAV----PLSQGQVVVSPPSSRSAVSIGGGNTS-AVSPSSIR 402 Query: 219 VPLVSTLNPQG 251 ++L P G Sbjct: 403 GSAAASLQPLG 413
>BJ46A_BOTJA (Q9DGI0) Antihemorragic factor BJ46a precursor (Metalloproteinase| inhibitor) Length = 341 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +1 Query: 1 RPNDNHAKNLDCFVYIL-NTKTFKRNRF 81 RP NHA +DC V I+ N TFK + F Sbjct: 99 RPQHNHAVEMDCDVKIMFNVDTFKEDVF 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,373,131 Number of Sequences: 219361 Number of extensions: 1298239 Number of successful extensions: 3202 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3099 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3186 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
