>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940|
          Length = 1024

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -3

Query: 446  LQKYAIKGDDLEIEKALQNEKLSASGVISVKSSKTSADXXXXXXXXXXXXXKGQDSGGRS 267
            LQ+Y I   + E   ALQ+ K+S+SG+ISVKS+K+  +             K   S  +S
Sbjct: 957  LQQYVIGDKEAE---ALQHSKISSSGIISVKSTKSENENGFDKSTKKRSSDKRSSSSSKS 1013

Query: 266  EKKKNR 249
            +  K R
Sbjct: 1014 KSSKKR 1019

>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490|
          Length = 1058

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = -3

Query: 452  KLLQKYAIKGDDLEIEKALQNEKLSASGVISVKSSKTSADXXXXXXXXXXXXXKGQDSGG 273
            +LL ++AI   + E   ALQ  K+S+SG+IS++S+KT                +G D   
Sbjct: 993  ELLDQFAIGDKEAE---ALQKSKISSSGLISIESTKTDNKKEKPSGFDKSAKKRGNDKHS 1049

Query: 272  RSEKKKNR 249
             +  KK R
Sbjct: 1050 STSNKKRR 1057

>PRIA_BUCAP (Q8KA15) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 720

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 379 DNFSFCRAFSISRSSPLIAYFCNNF 453
           DNF FCR   I    PL  Y C NF
Sbjct: 447 DNFLFCRNCLIKIKKPLFCYNCKNF 471

>MEC10_CAEEL (P34886) Degenerin mec-10 (Mechanosensory abnormality protein 10)|
          Length = 724

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 266 EKKKNRT*SCHLELRWSDPGILKSPEKPLQSLFSRRGKREAEVAKQAIICRISLTNLSKT 87
           +++ N    CH + +W++       E  L S  +++G + +E+ K+  IC       SK 
Sbjct: 276 DRQTNDAWPCHRKEQWTNTTCQTCDEHYLCSKKAKKGTKRSELKKEPCICE------SKG 329

Query: 86  LW---HHHASILL 57
           L+   H HA+++L
Sbjct: 330 LFCIKHEHAAMVL 342

>SC11A_RAT (O88457) Sodium channel protein type 11 alpha subunit (Sodium|
           channel protein type XI alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.9) (Sensory neuron
           sodium channel 2) (NaN)
          Length = 1765

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +3

Query: 294 PFRFFAFPVLLFLVSTCFAGFYTDNAACRQFLILQSFLNLKVISFNRVLL 443
           P+ +  F V+   ++TCF G   + +A R F + ++   + VIS  +V++
Sbjct: 191 PWNWLDFIVIGTAIATCFPGSQVNLSALRTFRVFRALKAISVISGLKVIV 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,230,201
Number of Sequences: 219361
Number of extensions: 1053600
Number of successful extensions: 3761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3761
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)