ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
2dbj|AK058272.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
4emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119... 68 3e-08
5dbj|AP006664.1| Lotus japonicus genomic DNA, chromosome 5, clone... 46 0.099
6dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.099
7dbj|AP006422.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.099
8dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.099
9dbj|AP004907.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.099
10dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.099
11dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.099
12gb|AC104083.3| Homo sapiens BAC clone RP11-588K22 from 4, comple... 44 0.39
13gb|AE000658.1|HUAE000658 Homo sapiens T-cell receptor alpha delt... 42 1.5
14gb|AC158743.4| Oryctolagus cuniculus, clone Oryctolagus cuniculu... 42 1.5
15ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 42 1.5
16gb|AC153801.1| Mus musculus 10 NOVECTOR RP24-255E19 (Roswell Par... 40 6.1
17gb|AC110214.7| Mus musculus chromosome 8, clone RP24-485L5, comp... 40 6.1
18gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, comp... 40 6.1
19gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence 40 6.1
20gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, compl... 40 6.1
21emb|AL603824.4| Human DNA sequence from clone RP11-235G8 on chro... 40 6.1
22gb|AC161188.5| Mus musculus chromosome 8, clone RP23-227D17, com... 40 6.1
23emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, ... 40 6.1
24emb|AL021890.1|ATT8O5 Arabidopsis thaliana DNA chromosome 4, BAC... 40 6.1
25gb|AC090912.6| Homo sapiens chromosome 18, clone RP11-370A5, com... 40 6.1
26gb|AC090914.9| Homo sapiens chromosome 18, clone RP11-739L10, co... 40 6.1
27emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on ch... 40 6.1
28emb|BX511162.8| Zebrafish DNA sequence from clone DKEY-240B22 in... 40 6.1
29gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 ma... 40 6.1
30gb|AC005897.3| Arabidopsis thaliana chromosome 2 clone T10J7 map... 40 6.1
31gb|AY065581.1| Zea mays clone tac 923.17 3' Ac insertion site se... 40 6.1
32gb|AC021106.6| Homo sapiens BAC clone RP11-177C12 from 4, comple... 40 6.1
33dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 6.1
34gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complet... 40 6.1
35gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete s... 40 6.1
36gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete... 40 6.1
37gb|AC023279.2|AC023279 Genomic sequence for Arabidopsis thaliana... 40 6.1
38emb|AJ575247.1|LJA575247 Lotus japonicus nfr1 gene for Nod-facto... 40 6.1
39emb|AJ575246.1|LJA575246 Lotus japonicus nfr1 gene for Nod-facto... 40 6.1
40gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome... 40 6.1
41dbj|AP000775.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.1
42emb|CT573093.3| CH250-1K10, complete sequence 40 6.1
43emb|AL929451.8| Mouse DNA sequence from clone RP23-300D11 on chr... 40 6.1
44emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 i... 40 6.1
45gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, com... 40 6.1
46dbj|AP006536.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.1
47dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 6.1
48gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome ... 40 6.1
49dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.1
50emb|AL663101.8| Mouse DNA sequence from clone RP23-205M7 on chro... 40 6.1
51gb|J04804.1|CELDEB1A C.elegans vinculin (deb-1) gene, complete cds 40 6.1 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                           
Query: 288     tcctttccttttcgattttttgctttccctgtgcttctctttcttgtcagcacttgtttt 347
               |||||||||||| ||||| ||  ||||  || ||||||||| |||||||||  |||| ||
Sbjct: 3596155 tcctttcctttttgatttcttcatttctttgcgcttctcttgcttgtcagcctttgtctt 3596096

                                             
Query: 348     gctggattttacactgataacgccgcttgc 377
               | ||||||| ||||||||||| ||||||||
Sbjct: 3596095 gttggatttcacactgataacaccgcttgc 3596066
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>dbj|AK058272.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B09, full
            insert sequence
          Length = 1839

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                        
Query: 288  tcctttccttttcgattttttgctttccctgtgcttctctttcttgtcagcacttgtttt 347
            |||||||||||| ||||| ||  ||||  || ||||||||| |||||||||  |||| ||
Sbjct: 1479 tcctttcctttttgatttcttcatttctttgcgcttctcttgcttgtcagcctttgtctt 1420

                                          
Query: 348  gctggattttacactgataacgccgcttgc 377
            | ||||||| ||||||||||| ||||||||
Sbjct: 1419 gttggatttcacactgataacaccgcttgc 1390
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                           
Query: 288     tcctttccttttcgattttttgctttccctgtgcttctctttcttgtcagcacttgtttt 347
               |||||||||||| ||||| ||  ||||  || ||||||||| |||||||||  |||| ||
Sbjct: 3596100 tcctttcctttttgatttcttcatttctttgcgcttctcttgcttgtcagcctttgtctt 3596041

                                             
Query: 348     gctggattttacactgataacgccgcttgc 377
               | ||||||| ||||||||||| ||||||||
Sbjct: 3596040 gttggatttcacactgataacaccgcttgc 3596011
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>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122128

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                         
Query: 288   tcctttccttttcgattttttgctttccctgtgcttctctttcttgtcagcacttgtttt 347
             |||||||||||| ||||| ||  ||||  || ||||||||| |||||||||  |||| ||
Sbjct: 93273 tcctttcctttttgatttcttcatttctttgcgcttctcttgcttgtcagcctttgtctt 93332

                                           
Query: 348   gctggattttacactgataacgccgcttgc 377
             | ||||||| ||||||||||| ||||||||
Sbjct: 93333 gttggatttcacactgataacaccgcttgc 93362
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>dbj|AP006664.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01C14, TM0359,
              complete sequence
          Length = 112181

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 65     ttgaggcatggtggtgccatagggttt 91
              |||||||||||||||||||| ||||||
Sbjct: 100307 ttgaggcatggtggtgccatggggttt 100333
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>dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT35D17, TM0104,
           complete sequence
          Length = 96208

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 65  ttgaggcatggtggtgccatagggttt 91
           |||||||||||||||||||| ||||||
Sbjct: 938 ttgaggcatggtggtgccatggggttt 912
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>dbj|AP006422.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT33E11, TM0310b,
             complete sequence
          Length = 93261

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 65    ttgaggcatggtggtgccatagggttt 91
             |||||||||||||||||||| ||||||
Sbjct: 27548 ttgaggcatggtggtgccatggggttt 27522
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>dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18E24, TM0074,
             complete sequence
          Length = 131741

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 65    ttgaggcatggtggtgccatagggttt 91
             |||||||||||||||||||| ||||||
Sbjct: 62116 ttgaggcatggtggtgccatggggttt 62142
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>dbj|AP004907.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11D15, TM0065,
             complete sequence
          Length = 115046

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 65    ttgaggcatggtggtgccatagggttt 91
             |||||||||||||||||||| ||||||
Sbjct: 32698 ttgaggcatggtggtgccatggggttt 32672
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>dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04C07, TM0098a,
            complete sequence
          Length = 33254

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 65   ttgaggcatggtggtgccatagggttt 91
            |||||||||||||||||||| ||||||
Sbjct: 1358 ttgaggcatggtggtgccatggggttt 1384
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>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087,
             complete sequence
          Length = 124300

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 65    ttgaggcatggtggtgccatagggttt 91
             |||||||||||||||||||| ||||||
Sbjct: 35680 ttgaggcatggtggtgccatggggttt 35654
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>gb|AC104083.3| Homo sapiens BAC clone RP11-588K22 from 4, complete sequence
          Length = 196537

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 283   tcttgtcctttccttttcgatttttt 308
             |||||||||||||||||| |||||||
Sbjct: 48098 tcttgtcctttccttttctatttttt 48123
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>gb|AE000658.1|HUAE000658 Homo sapiens T-cell receptor alpha delta locus from bases 1 to 250529
              (section 1 of 5) of the Complete Nucleotide Sequence
          Length = 250529

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 310    ctttccctgtgcttctctttc 330
              |||||||||||||||||||||
Sbjct: 183067 ctttccctgtgcttctctttc 183087
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>gb|AC158743.4| Oryctolagus cuniculus, clone Oryctolagus cuniculus-16796957A1,
           complete sequence
          Length = 42284

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 300 cgattttttgctttccctgtg 320
           |||||||||||||||||||||
Sbjct: 429 cgattttttgctttccctgtg 409
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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 310    ctttccctgtgcttctctttc 330
              |||||||||||||||||||||
Sbjct: 183067 ctttccctgtgcttctctttc 183087
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>gb|AC153801.1| Mus musculus 10 NOVECTOR RP24-255E19 (Roswell Park Cancer Institute
              (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 156755

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ttccctgtgcttctctttct 331
              ||||||||||||||||||||
Sbjct: 120844 ttccctgtgcttctctttct 120825
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>gb|AC110214.7| Mus musculus chromosome 8, clone RP24-485L5, complete sequence
          Length = 213387

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 341   ttgttttgctggattttacactga 364
             ||||||||||| ||||||||||||
Sbjct: 64847 ttgttttgctgtattttacactga 64870
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>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence
          Length = 212061

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   ttcaaaataccaggatcaga 218
             ||||||||||||||||||||
Sbjct: 19943 ttcaaaataccaggatcaga 19924
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>gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence
          Length = 31787

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ttcttcttcttctccgatct 272
             ||||||||||||||||||||
Sbjct: 10672 ttcttcttcttctccgatct 10653
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>gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, complete sequence
          Length = 208489

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aattccaattggccagtatt 38
             ||||||||||||||||||||
Sbjct: 67319 aattccaattggccagtatt 67338
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>emb|AL603824.4| Human DNA sequence from clone RP11-235G8 on chromosome 10 Contains part
             of the gene for cyclin fold protein 1 (CFP1) (CBCP1),
             complete sequence
          Length = 89871

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   tgtcagcacttgttttgctg 351
             ||||||||||||||||||||
Sbjct: 32293 tgtcagcacttgttttgctg 32274
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>gb|AC161188.5| Mus musculus chromosome 8, clone RP23-227D17, complete sequence
          Length = 143672

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 341    ttgttttgctggattttacactga 364
              ||||||||||| ||||||||||||
Sbjct: 102829 ttgttttgctgtattttacactga 102852
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>emb|AL161556.2|ATCHRIV56 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 56
          Length = 196247

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ttcttcttcttctccgatct 272
             ||||||||||||||||||||
Sbjct: 33019 ttcttcttcttctccgatct 33038
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>emb|AL021890.1|ATT8O5 Arabidopsis thaliana DNA chromosome 4, BAC clone T8O5 (ESSAII project)
          Length = 83029

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ttcttcttcttctccgatct 272
             ||||||||||||||||||||
Sbjct: 31531 ttcttcttcttctccgatct 31550
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>gb|AC090912.6| Homo sapiens chromosome 18, clone RP11-370A5, complete sequence
          Length = 187374

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 340   cttgttttgctggattttacactgataa 367
             ||||||||| ||||| ||||||||||||
Sbjct: 36968 cttgttttgatggatgttacactgataa 36941
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>gb|AC090914.9| Homo sapiens chromosome 18, clone RP11-739L10, complete sequence
          Length = 144425

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 340   cttgttttgctggattttacactgataa 367
             ||||||||| ||||| ||||||||||||
Sbjct: 33363 cttgttttgatggatgttacactgataa 33390
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>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains part
              of the gene for a novel protein (likely ortholog to homo
              sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    tcctattcttcttcttctcc 267
              ||||||||||||||||||||
Sbjct: 144836 tcctattcttcttcttctcc 144817
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>emb|BX511162.8| Zebrafish DNA sequence from clone DKEY-240B22 in linkage group 1,
             complete sequence
          Length = 119612

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   tggcgatttcaaaataccag 211
             ||||||||||||||||||||
Sbjct: 28802 tggcgatttcaaaataccag 28783
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>gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 map nga361, complete
             sequence
          Length = 100665

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ttcttcttcttctccgatct 272
             ||||||||||||||||||||
Sbjct: 56371 ttcttcttcttctccgatct 56352
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>gb|AC005897.3| Arabidopsis thaliana chromosome 2 clone T10J7 map mi398, complete
             sequence
          Length = 87119

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ttcttcttcttctccgatct 272
             ||||||||||||||||||||
Sbjct: 62631 ttcttcttcttctccgatct 62612
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>gb|AY065581.1| Zea mays clone tac 923.17 3' Ac insertion site sequence
          Length = 281

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 agtcctattcttcttcttct 265
           ||||||||||||||||||||
Sbjct: 152 agtcctattcttcttcttct 133
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>gb|AC021106.6| Homo sapiens BAC clone RP11-177C12 from 4, complete sequence
          Length = 195108

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   tatcttgtcctttccttttc 300
             ||||||||||||||||||||
Sbjct: 24260 tatcttgtcctttccttttc 24279
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 373     cttgcagacaatttctcatt 392
               ||||||||||||||||||||
Sbjct: 2250106 cttgcagacaatttctcatt 2250125
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>gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complete sequence
          Length = 105489

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   caacctctgcctccctctta 156
             ||||||||||||||||||||
Sbjct: 42361 caacctctgcctccctctta 42342
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>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence
          Length = 263876

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ttccctgtgcttctctttct 331
             ||||||||||||||||||||
Sbjct: 34607 ttccctgtgcttctctttct 34588
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>gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete sequence
          Length = 135809

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    tttggcaacctctgcctccc 151
              ||||||||||||||||||||
Sbjct: 119759 tttggcaacctctgcctccc 119740
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>gb|AC023279.2|AC023279 Genomic sequence for Arabidopsis thaliana BAC F12K21 from chromosome I,
             complete sequence
          Length = 117585

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ttcttcttcttctccgatct 272
             ||||||||||||||||||||
Sbjct: 66126 ttcttcttcttctccgatct 66107
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>emb|AJ575247.1|LJA575247 Lotus japonicus nfr1 gene for Nod-factor receptor 1b, exons 1-12
          Length = 10253

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   ttgaggcatggtggtgccat 84
            ||||||||||||||||||||
Sbjct: 1966 ttgaggcatggtggtgccat 1985
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>emb|AJ575246.1|LJA575246 Lotus japonicus nfr1 gene for Nod-factor receptor 1a, exons 1-12
          Length = 10253

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   ttgaggcatggtggtgccat 84
            ||||||||||||||||||||
Sbjct: 1966 ttgaggcatggtggtgccat 1985
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>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence
          Length = 211561

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    aattccaattggccagtatt 38
             ||||||||||||||||||||
Sbjct: 35272 aattccaattggccagtatt 35253
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>dbj|AP000775.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-708B6, complete
            sequence
          Length = 189955

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  attttttgctttccctgtgc 321
            ||||||||||||||||||||
Sbjct: 8940 attttttgctttccctgtgc 8959
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>emb|CT573093.3| CH250-1K10, complete sequence
          Length = 185363

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    aggctttggagaggcttctc 191
              ||||||||||||||||||||
Sbjct: 176272 aggctttggagaggcttctc 176291
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>emb|AL929451.8| Mouse DNA sequence from clone RP23-300D11 on chromosome 2, complete
            sequence
          Length = 124010

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 306  tttgctttccctgtgcttctcttt 329
            |||||||||| |||||||||||||
Sbjct: 3521 tttgctttccatgtgcttctcttt 3498
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>emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 in linkage group 5,
             complete sequence
          Length = 145957

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tgaagcaaatggtacaacaa 62
             ||||||||||||||||||||
Sbjct: 22996 tgaagcaaatggtacaacaa 23015
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>gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, complete sequence
          Length = 43308

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   gcaacctctgcctccctctt 155
             ||||||||||||||||||||
Sbjct: 33975 gcaacctctgcctccctctt 33994
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>dbj|AP006536.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05B16, TM0545,
             complete sequence
          Length = 66136

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ttgaggcatggtggtgccat 84
             ||||||||||||||||||||
Sbjct: 51933 ttgaggcatggtggtgccat 51952
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>dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT09H13, TM0200,
             complete sequence
          Length = 91393

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    aggcatggtggtgccatagggttt 91
             ||||||||||||||||| ||||||
Sbjct: 39695 aggcatggtggtgccatggggttt 39672
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>gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome 9, complete sequence
          Length = 264591

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   ttcaaaataccaggatcaga 218
             ||||||||||||||||||||
Sbjct: 20107 ttcaaaataccaggatcaga 20126
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>dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04F23, TM0044a,
             complete sequence
          Length = 65620

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ttgaggcatggtggtgccat 84
             ||||||||||||||||||||
Sbjct: 60638 ttgaggcatggtggtgccat 60657
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>emb|AL663101.8| Mouse DNA sequence from clone RP23-205M7 on chromosome X, complete
              sequence
          Length = 216297

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    atctaccaccactatcttgt 288
              ||||||||||||||||||||
Sbjct: 212785 atctaccaccactatcttgt 212804
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>gb|J04804.1|CELDEB1A C.elegans vinculin (deb-1) gene, complete cds
          Length = 12263

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 ttcttcttcttctccgatct 272
           ||||||||||||||||||||
Sbjct: 890 ttcttcttcttctccgatct 909


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,964,914
Number of Sequences: 3902068
Number of extensions: 6964914
Number of successful extensions: 379851
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 379456
Number of HSP's gapped (non-prelim): 395
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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