ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33b04 |
|---|---|
| Clone Library Name | barley_pub |
>ODO1_RICPR (Q9ZDY3) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 936 Score = 35.4 bits (80), Expect = 0.069 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = -3 Query: 454 DIKYVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIK 338 + KYVGR SA+ A G VH ++Q +L+ +AL D IK Sbjct: 894 EFKYVGREESASPAVGSLQVHNKQQEKLLMEALGDDIIK 932
>ODO1_CAEEL (O61199) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1029 Score = 34.7 bits (78), Expect = 0.12 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -3 Query: 448 KYVGRAPSAATATGFYTVHVQEQTELVKK 362 KY GR PS++ ATG H+QEQ E++ K Sbjct: 987 KYAGRLPSSSPATGNKFTHMQEQKEMMSK 1015
>ODO1_CAEBR (Q623T0) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1027 Score = 34.7 bits (78), Expect = 0.12 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -3 Query: 448 KYVGRAPSAATATGFYTVHVQEQTELVKK 362 KY GR PS++ ATG H+QEQ E++ K Sbjct: 985 KYAGRLPSSSPATGNKYTHMQEQKEMMSK 1013
>ODO1_BUCAI (P57388) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 909 Score = 34.3 bits (77), Expect = 0.15 Identities = 12/32 (37%), Positives = 24/32 (75%) Frame = -3 Query: 451 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 356 +KY+GR+ SA+ A G+ ++H ++Q +++ AL Sbjct: 875 LKYIGRSSSASPAVGYISIHKKQQEKIIYNAL 906
>ODO1_BUCBP (Q89AJ7) Oxoglutarate dehydrogenase (EC 1.2.4.2)| Length = 916 Score = 33.9 bits (76), Expect = 0.20 Identities = 13/32 (40%), Positives = 23/32 (71%) Frame = -3 Query: 451 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 356 + YVGR+ SA+ ATG+ +H ++Q +++ AL Sbjct: 881 LNYVGRSSSASPATGYMKIHKEQQKKIIYDAL 912
>ODO1_ECOLI (P0AFG3) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 33.5 bits (75), Expect = 0.26 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 451 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 356 ++Y GR SA+ A G+ +VH ++Q +LV AL Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930
>ODO1_ECOL6 (P0AFG4) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 33.5 bits (75), Expect = 0.26 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 451 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 356 ++Y GR SA+ A G+ +VH ++Q +LV AL Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930
>ODO1_ECO57 (P0AFG5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 33.5 bits (75), Expect = 0.26 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 451 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 356 ++Y GR SA+ A G+ +VH ++Q +LV AL Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930
>ODO1_RICCN (Q92J42) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 928 Score = 32.3 bits (72), Expect = 0.58 Identities = 15/33 (45%), Positives = 22/33 (66%) Frame = -3 Query: 454 DIKYVGRAPSAATATGFYTVHVQEQTELVKKAL 356 + KYVGR SA+ A G VH ++Q +L++ AL Sbjct: 894 EFKYVGREESASPAVGSLQVHNKQQEKLLRTAL 926
>ODO1_COXBU (P51056) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 934 Score = 32.0 bits (71), Expect = 0.76 Identities = 14/33 (42%), Positives = 24/33 (72%) Frame = -3 Query: 451 IKYVGRAPSAATATGFYTVHVQEQTELVKKALQ 353 ++YVGR+ AA A G+ ++V+ Q +LV +AL+ Sbjct: 901 LEYVGRSAFAAPAAGYSALYVKLQEQLVNQALE 933
>ODO1_AZOVI (P20707) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 943 Score = 30.8 bits (68), Expect = 1.7 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = -3 Query: 451 IKYVGRAPSAATATGFYTVHVQEQTELVKKA 359 ++Y GR SAA A G+ ++H ++Q +L++ A Sbjct: 910 LQYAGREASAAPACGYASMHAEQQEKLLQDA 940
>ODO1_LEPIN (Q8F6S7) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 920 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 445 YVGRAPSAATATGFYTVHVQEQTELVKKALQ 353 Y GR S + A G +H+QEQ +LV A Q Sbjct: 889 YAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919
>ODO1_LEPIC (Q72PJ7) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 920 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 445 YVGRAPSAATATGFYTVHVQEQTELVKKALQ 353 Y GR S + A G +H+QEQ +LV A Q Sbjct: 889 YAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919
>TNF10_HUMAN (P50591) Tumor necrosis factor ligand superfamily member 10| (TNF-related apoptosis-inducing ligand) (TRAIL protein) (Apo-2 ligand) (Apo-2L) (CD253 antigen) Length = 281 Score = 29.6 bits (65), Expect = 3.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +3 Query: 273 SAW*EIRSSHGYAKNLHVQNGDLM 344 ++W RS H + NLH++NG+L+ Sbjct: 152 NSWESSRSGHSFLSNLHLRNGELV 175
>ODO1_MACFA (Q60HE2) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1023 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 445 YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIKS 335 Y GR P+AA ATG H+ E L+ A D K+ Sbjct: 985 YAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDVFKN 1021
>ODO1_GEOKA (Q5L172) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 950 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -3 Query: 454 DIKYVGRAPSAATATGFYTVHVQEQTELVKKAL 356 D+ Y+GR A+ A G VH +EQ +++ AL Sbjct: 914 DVSYIGRRRRASPAEGDPVVHRKEQERIIRCAL 946
>ODO1_PONPY (Q5RCB8) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1023 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 445 YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIKS 335 Y GR P+AA ATG H+ E L+ A D K+ Sbjct: 985 YAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDIFKN 1021
>ODO1_RALEU (Q59106) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 950 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 445 YVGRAPSAATATGFYTVHVQEQTELVKKA 359 Y GR SA+ A G+Y H ++Q L++ A Sbjct: 911 YAGRPASASPAVGYYAKHNEQQKALLEAA 939
>ATU_DROME (Q94546) Another transcription unit protein| Length = 725 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -1 Query: 348 TPSSPRSERVGSLHSHESF*SPTMQKNNRSKLQPFGE*SLRMCGTARVR 202 TP SP+S R GSL S +S SP +++ + + G R G+A R Sbjct: 104 TPESPQSHRSGSLQSRKSG-SPQSRRSGSPQSRKSGSTHSRRSGSAHSR 151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,950,403 Number of Sequences: 219361 Number of extensions: 1310993 Number of successful extensions: 2823 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2774 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2822 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
