>RFX1_HUMAN (P22670) MHC class II regulatory factor RFX1 (RFX) (Enhancer factor|
           C) (EF-C)
          Length = 979

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
 Frame = +3

Query: 153 DSATSVSATRP------RLHVRKLQQGLPVPGARRVLVYRPQKPRPG 275
           +S++S +A  P      +L V  +QQ +PV   R V+   PQ P+PG
Sbjct: 214 NSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPG 260

>IAP2_NPVOP (O10324) Probable apoptosis inhibitor 2 (IAP-2)|
          Length = 236

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
 Frame = +1

Query: 106 AKRSTRHKLRYNCVKLI--LLRPSQLQDRGYT--------YASCSKAFQYLEHDGFWCIA 255
           A+R  RH     CV  I  L+    L+ R +         + S ++    L   GF+C+ 
Sbjct: 59  ARRVKRHTYSDTCVSAINALVANESLRKRSFASFKWARRQFGSRAREVDMLSRRGFYCVG 118

Query: 256 LRSHAPGLCIVSTSC 300
            R    G C V T+C
Sbjct: 119 KRLRCAG-CKVVTTC 132

>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 24  PTTRGKC*KETMFTTTNTLRQSTSWAHSKEVYTTQITLQLR*TDSATS 167
           PTTR    + T  TTT T R +T+   ++   TT  T +   T + T+
Sbjct: 109 PTTRSTTTRHTTTTTTTTRRPTTTTTTTRRPTTTTTTTRRPTTTTTTT 156

>CTR1_OCTVU (Q7YW31) Cephalotocin receptor 1 (OT/VP superfamily peptide|
           receptor-1) (OC/CE-R 1)
          Length = 397

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 286 VSTSCCCFFCWGPASTAVDWLA 351
           +S   CCF CW P      W A
Sbjct: 298 LSVVACCFICWSPFFVCQMWAA 319

>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) [Contains: Notch 2 extracellular truncation; Notch 2
           intracellular domain]
          Length = 2471

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +1

Query: 157 LLRPSQLQDRGYTYASCSKAFQYLEHDGFWCIALRSHAPGLCIVSTSCCCFFCWGPASTA 336
           LL+P+  Q+ G    +C+       + G+ C+ +   +   C  +   C F    P ST 
Sbjct: 303 LLQPNACQNGG----TCTN-----RNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTC 353

Query: 337 VDWLAS-RCIWK*SSAG 384
           +D +AS  C+     AG
Sbjct: 354 IDRVASFSCLCPEGKAG 370

>BNK_DROME (P40794) Protein bottleneck|
          Length = 303

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 84  QSTSWAHSKEVYTTQITLQLR*TDSATSVSATRPRLH 194
           Q T  +  K  +T+Q+ ++L  T+    +S  RP+LH
Sbjct: 48  QPTITSTPKPRFTSQLAVELAKTEPGNGISPLRPKLH 84

>POLG_KUNJM (P14335) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3433

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 160 LRPSQLQDRGYTYASCSKAFQYL 228
           ++  +LQ +G TY  CSKAF++L
Sbjct: 580 VKMEKLQLKGTTYGVCSKAFRFL 602

>EPCR_BOVIN (Q28105) Endothelial protein C receptor precursor (Endothelial cell|
           protein C receptor) (Activated protein C receptor) (APC
           receptor)
          Length = 241

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 338 TAVLAGPQQKKQQQLVETMQSPGAWLLRAIHQNPSCSRYWKALLQLAYV 192
           T VL GP +    Q ++ +Q P +W L  I+ N    RY +  + L  V
Sbjct: 57  THVLEGPGRNVSIQQLQPLQEPDSWALTKIYLN----RYLEEFVGLVQV 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,714,029
Number of Sequences: 219361
Number of extensions: 879709
Number of successful extensions: 2522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2520
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)