ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl33a11 |
|---|---|
| Clone Library Name | barley_pub |
>DEOB_MYCPU (Q98QT4) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 395 Score = 32.3 bits (72), Expect = 0.28 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 176 IVCTDHGNVLHFP-QLQTWESL*LVPNAWCANSELLRNPDSVTDLSTIGTMSWIIRRNYA 352 I+ DHGN FP T E+L L+ S+ +NP + L +GT I+ RN+ Sbjct: 326 IITADHGNDPTFPGSSHTREALPLI-----VYSKAFKNPSYLKTLLGLGTSGNIVARNFG 380 Query: 353 MSPIGLG 373 + I G Sbjct: 381 LKTIETG 387
>VLDLR_CHICK (P98165) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) (Vitellogenin receptor) (VTG receptor) Length = 863 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Frame = +1 Query: 166 GVGNCLHRPWQCSTFPSASDMGISVTCSK--CVVCQFR 273 G G C+H+ W+C P D + C C QFR Sbjct: 265 GSGECIHKKWRCDGDPDCKDGSDEINCPSRTCRPDQFR 302
>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)| Length = 520 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 78 TMPEWVRHTGYKKSGTRAKKYRQVSSCVCR 167 T PEW RH K SG + K R+ SS R Sbjct: 474 TAPEWSRHVNNKSSGPSSSKGRKGSSYTAR 503
>VLDLR_RAT (P98166) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 1.4 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +1 Query: 166 GVGNCLHRPWQCSTFPSASDMGISVTC 246 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_RABIT (P35953) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 1.4 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +1 Query: 166 GVGNCLHRPWQCSTFPSASDMGISVTC 246 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_MOUSE (P98156) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 1.4 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +1 Query: 166 GVGNCLHRPWQCSTFPSASDMGISVTC 246 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_HUMAN (P98155) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 1.4 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +1 Query: 166 GVGNCLHRPWQCSTFPSASDMGISVTC 246 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>SYL_BUCAI (P57519) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 859 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 15 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYKKSGTRA 131 +K T ++ LF V ITKKT+P W+ + + + GT A Sbjct: 294 YKVKYTGINTNLFVVHPITKKTIPIWISNATHIEYGTNA 332
>DXS_MYCPE (Q8EWX7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 612 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +2 Query: 2 AFQHTQTLYYNPT*VIVLRNNNNKKDDARMGAAHGLQEKWHACKKI 139 AF+ + YN T ++++ N+N +GA H + K+ K + Sbjct: 155 AFEALNNIAYNKTPMLIIINDNGMSISKNVGALHKIMSKFQMSKSV 200
>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear| transcription factor, X box-binding, 1) Length = 1104 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Frame = -1 Query: 213 GKCRTLPWSVQTIAHPCK---RMRKPDDIFLHACHFSCNPCAAP 91 GK + WS I H C R ++P H+C+ C+P P Sbjct: 408 GKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCP 451
>KRB2_VACCV (P24362) Probable serine/threonine-protein kinase B12 (EC 2.7.11.1)| Length = 283 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 15 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYK 113 HK L E+ FY++++ T+ W R G K Sbjct: 48 HKSHKPLLSEIRFYISVLDPLTIDNWTRERGIK 80
>KRB2_VACCC (P21098) Probable serine/threonine-protein kinase B12 (EC 2.7.11.1)| Length = 283 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 15 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYK 113 HK L E+ FY++++ T+ W R G K Sbjct: 48 HKSHKPLLSEIRFYISVLDPLTIDNWTRERGIK 80
>KRB2_VACCA (O57259) Probable serine/threonine-protein kinase B12 (EC 2.7.11.1)| Length = 283 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 15 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYK 113 HK L E+ FY++++ T+ W R G K Sbjct: 48 HKSHKPLLSEIRFYISVLDPLTIDNWTRERGIK 80
>DDX10_MOUSE (Q80Y44) Probable ATP-dependent RNA helicase DDX10 (EC 3.6.1.-)| (DEAD box protein 10) Length = 875 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +2 Query: 56 RNNNNKKDDARMGAAHGLQEKWHACKKISSG 148 + NN + DD R + HG + KW + + +G Sbjct: 827 KRNNTEDDDVRPRSRHGKKAKWETVEPLDTG 857
>LRP5_MOUSE (Q91VN0) Low-density lipoprotein receptor-related protein 5 precursor| (LRP7) (Lr3) Length = 1614 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Frame = +1 Query: 151 PHAFA---GVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQF 270 P FA G +C+ W+C FP +D C C QF Sbjct: 1260 PDQFACTTGEIDCIPGAWRCDGFPECADQSDEEGCPVCSASQF 1302
>LRP5_HUMAN (O75197) Low-density lipoprotein receptor-related protein 5 precursor| Length = 1615 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%) Frame = +1 Query: 151 PHAFA---GVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQF 270 P FA G +C+ W+C FP D C C QF Sbjct: 1261 PDQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQF 1303
>HYIN_PANAY (Q47860) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 460 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = +1 Query: 172 GNCLHRPWQCSTFPSASDMG--ISVTCSKCVVCQFR 273 G C+ RPW + S SD G + + + C + FR Sbjct: 148 GGCVSRPWSAGLYRSPSDTGGSVRIPAAFCGIAGFR 183
>VHR1_COWPX (P12932) Host range protein 1| Length = 669 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 16/73 (21%) Frame = +2 Query: 170 WAIVCTDHG-NVLHF----PQLQ-----------TWESL*LVPNAWCANSELLRNPDSVT 301 ++++ TDHG ++H P+L+ TW+ + L PNA ++++ +N +SV Sbjct: 590 FSLIFTDHGAKIIHRYANNPELRAYYESKQNKIYTWKYMILFPNAIVKHNKIHKNIESVD 649 Query: 302 DLSTIGTMSWIIR 340 D + I + + I+ Sbjct: 650 DNTYISNLPYTIK 662
>SYD_CHLTE (Q8KCT7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 603 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Frame = +2 Query: 98 AHGLQEKW--HACKKI---SSGFLMRLQGWAIVCTDHGNVL 205 A GLQ ++ H C ++ S G L+R+ GW DHG ++ Sbjct: 8 ADGLQNRFRTHYCGRLNRKSEGELVRIAGWVHRIRDHGGLI 48
>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2 precursor| (Megalin) (Glycoprotein 330) (gp330) Length = 4655 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/25 (40%), Positives = 11/25 (44%) Frame = +1 Query: 172 GNCLHRPWQCSTFPSASDMGISVTC 246 GNC+HR W C DM C Sbjct: 1281 GNCIHRAWLCDRDNDCGDMSDEKDC 1305
>EFG_BACST (P23081) Elongation factor G (EF-G) (Fragment)| Length = 79 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = +3 Query: 27 TTTLHELLFYVTIITK-----KTMPEWVRHTGYKKSGTRAKKYRQ 146 TTT +LFY + K + P W + K +G+R+++ RQ Sbjct: 24 TTTTERILFYTGRVHKIGEVHEAQPRWTGWSKSKSAGSRSRRRRQ 68
>NPA1P_HUMAN (O60287) Nucleolar preribosomal-associated protein 1 (Fragment)| Length = 2248 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +3 Query: 51 FYVTIITKKTMPEWVRHTGYKKSGTRAKKYRQVSSCVCRGGQLSAPTMAMFYISLSFRHG 230 FY + +KT +WV G + G R K+ ++ C RG +F+I LSF H Sbjct: 1751 FYSSDFEQKTEQKWV--FGLLRQGIRDKQCYEL--CARRG---------IFHIILSFFHS 1797 Query: 231 NLCN 242 LC+ Sbjct: 1798 PLCD 1801
>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3| precursor (hLRp105) Length = 770 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +1 Query: 172 GNCLHRPWQCSTFPSASDMGISVTCS 249 G CL PWQC+T D CS Sbjct: 176 GKCLPGPWQCNTVDECGDGSDEGNCS 201
>CO8B_PAROL (Q9PVW7) Complement component C8 beta chain precursor (Complement| component 8 beta subunit) Length = 588 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +1 Query: 172 GNCLHRPWQCSTFPSASDMGISVTCSK 252 G C+HR QC+ DM V C K Sbjct: 127 GRCIHRTLQCNGEDDCGDMSDEVGCKK 153
>LDLR_HUMAN (P01130) Low-density lipoprotein receptor precursor (LDL receptor)| Length = 860 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +1 Query: 172 GNCLHRPWQCSTFPSASDMGISVTCSKCVVCQ 267 GNC+H QC DM V C +C+ Sbjct: 246 GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE 277
>LRP6_HUMAN (O75581) Low-density lipoprotein receptor-related protein 6 precursor| Length = 1613 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/38 (28%), Positives = 16/38 (42%) Frame = +1 Query: 160 FAGVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQFR 273 F G +C+ W+C F D + C C QF+ Sbjct: 1257 FTGEIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQ 1294
>NAPA_MAGMG (Q93HX3) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 827 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +2 Query: 272 ELLRNPDSVTDLSTIGTMSWIIRRNYAMSPI 364 E L+ PD VT + G+ W I YA S + Sbjct: 130 EQLKKPDGVTRVGMFGSGQWTIWEGYAASKL 160
>LRP6_MOUSE (O88572) Low-density lipoprotein receptor-related protein 6 precursor| Length = 1613 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/38 (28%), Positives = 16/38 (42%) Frame = +1 Query: 160 FAGVGNCLHRPWQCSTFPSASDMGISVTCSKCVVCQFR 273 F G +C+ W+C F D + C C QF+ Sbjct: 1257 FTGDIDCIPVAWRCDGFTECEDHSDELNCPVCSESQFQ 1294
>UBIE_GEOKA (Q5KXU0) Menaquinone biosynthesis methyltransferase ubiE (EC| 2.1.1.-) Length = 234 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -2 Query: 212 GNVEHCHGRCRQLPTPANA*GNLTIFFCTR 123 GNV+ HG QLP P N+ +TI F R Sbjct: 98 GNVKLIHGNAMQLPFPDNSFDYVTIGFGLR 127
>KAR3_YEAST (P17119) Kinesin-like protein KAR3 (Nuclear fusion protein)| Length = 729 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 29 YNPT*VIVLRNNNNKKDDARMGAAHGLQ 112 YN V +LR++NN K+D +G H ++ Sbjct: 523 YNENIVDLLRSDNNNKEDTSIGLKHEIR 550
>CYSI_BUCAI (P57502) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 569 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = +1 Query: 82 CPNGCGTRVTRKVARVQKNIVRFPHAFAG--VGN 177 CPNGCG + ++ + K+I R+ G +GN Sbjct: 478 CPNGCGRSLLAEIGLIGKSIGRYNLYIGGNRIGN 511 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,520,752 Number of Sequences: 219361 Number of extensions: 1361208 Number of successful extensions: 3276 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3276 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
