ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl33a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLIGB_ELAQU (Q9PWI3) Phospholipase A2 inhibitor gamma subunit B ... 30 2.5
2MT_EISFO (P81695) Cadmium-metallothionein (MT) (Fragment) 29 4.3
3MTXX_METMA (Q8Q083) Putative methyltransferase mtx subunit X (EC... 28 9.7
4FRIZ4_DROME (Q9NBW1) Protein frizzled-4 precursor (dFz4) 28 9.7

>PLIGB_ELAQU (Q9PWI3) Phospholipase A2 inhibitor gamma subunit B precursor|
           (PLI-gamma B)
          Length = 200

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 172 RKCCTCDNCK-MPPPVLPGAHKMPSGDQ 252
           R CCT D C+ +PPPVL      P+G Q
Sbjct: 92  RACCTGDECQTLPPPVLEPQVNRPNGLQ 119



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>MT_EISFO (P81695) Cadmium-metallothionein (MT) (Fragment)|
          Length = 75

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 181 CTCDNCK-MPPPVLPGAHKMPSGDQGVRKC*RGPFKIRASTRCTVAEMA 324
           C C NC+ +    LPG  K+   D    KC     K  A+ +C+    A
Sbjct: 17  CCCTNCRCLKSECLPGCKKLCCADAEKGKCGNAGCKCGAACKCSAGSCA 65



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>MTXX_METMA (Q8Q083) Putative methyltransferase mtx subunit X (EC 2.1.1.-)|
          Length = 280

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +2

Query: 233 KCHQVIRGFASASGVLSRSGQAPGVR*LKWHALFVRTCSWPKFLA 367
           K   VIRG A ASG LS   +A G++ +   AL +     P FLA
Sbjct: 81  KVDAVIRGTAKASGTLSSLKKALGMKRICRLALLLTADGTPFFLA 125



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>FRIZ4_DROME (Q9NBW1) Protein frizzled-4 precursor (dFz4)|
          Length = 705

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 IAKCHPLSYPVRIKCHQVIRGF 259
           I  C  L   VRI+CH V++GF
Sbjct: 116 IGPCRSLCESVRIRCHPVLQGF 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,652,870
Number of Sequences: 219361
Number of extensions: 1328902
Number of successful extensions: 3035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3027
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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